Wall clock time and date at job start Mon Mar 30 2020 01:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47385 * 2 1 4 4 H 1.08996 * 109.47219 * 174.08841 * 3 2 1 5 5 C 1.50707 * 109.47016 * 54.08905 * 3 2 1 6 6 H 1.07996 * 119.99718 * 240.00471 * 5 3 2 7 7 C 1.37878 * 119.99800 * 60.00095 * 5 3 2 8 8 N 1.31512 * 119.99788 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99582 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47448 * 59.99953 * 9 7 5 11 11 H 1.48503 * 109.46599 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47002 * 299.99411 * 9 7 5 13 13 N 1.46901 * 109.47330 * 294.08838 * 3 2 1 14 14 C 1.46895 * 110.99996 * 275.76082 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.23930 * 14 13 3 16 16 C 1.38259 * 119.98848 * 259.72174 * 15 14 13 17 17 C 1.38228 * 120.05768 * 179.72330 * 16 15 14 18 18 C 1.38237 * 120.04820 * 0.55433 * 17 16 15 19 19 C 1.38409 * 119.98756 * 359.71922 * 18 17 16 20 20 F 1.35096 * 120.02927 * 179.97438 * 19 18 17 21 21 C 1.38281 * 119.99614 * 79.99688 * 15 14 13 22 22 Cl 1.73594 * 120.02135 * 0.02562 * 21 15 14 23 23 H 1.09004 * 109.47354 * 298.55668 * 1 2 3 24 24 H 1.08998 * 109.47288 * 178.55809 * 1 2 3 25 25 H 1.09007 * 109.47244 * 58.56233 * 1 2 3 26 26 H 1.08998 * 109.47297 * 120.00574 * 2 1 3 27 27 H 1.09003 * 109.47384 * 240.00093 * 2 1 3 28 28 H 0.97006 * 119.99218 * 180.02562 * 8 7 5 29 29 H 1.00905 * 110.99684 * 39.71469 * 13 3 2 30 30 H 1.09005 * 109.47061 * 296.23201 * 14 13 3 31 31 H 1.08997 * 109.47274 * 56.23717 * 14 13 3 32 32 H 1.07997 * 119.97263 * 0.02562 * 16 15 14 33 33 H 1.08000 * 119.97602 * 180.27065 * 17 16 15 34 34 H 1.08001 * 120.00850 * 179.70480 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1248 1.4442 0.1058 5 6 1.4217 2.1939 1.1508 6 1 0.8149 3.0669 0.9618 7 6 1.6309 1.7666 2.4449 8 7 2.3703 0.7036 2.6750 9 14 0.8640 2.6976 3.8713 10 1 -0.6140 2.6946 3.7269 11 1 1.2374 2.0400 5.1494 12 1 1.3585 4.0978 3.8715 13 7 1.6703 2.0926 -1.2644 14 6 2.6513 1.7942 -2.3163 15 6 2.1920 2.3995 -3.6178 16 6 1.5771 1.6072 -4.5695 17 6 1.1502 2.1620 -5.7613 18 6 1.3477 3.5077 -6.0084 19 6 1.9681 4.3016 -5.0594 20 9 2.1620 5.6167 -5.3002 21 6 2.3908 3.7459 -3.8622 22 17 3.1699 4.7393 -2.6706 23 1 -0.3634 0.4913 0.9027 24 1 -0.3634 -1.0273 -0.0259 25 1 -0.3634 0.5360 -0.8769 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.5171 0.4029 3.5855 29 1 0.7405 1.8246 -1.5504 30 1 3.6184 2.2151 -2.0411 31 1 2.7443 0.7142 -2.4306 32 1 1.4259 0.5549 -4.3795 33 1 0.6661 1.5428 -6.5020 34 1 1.0181 3.9396 -6.9418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577861451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:25 Heat of formation + Delta-G solvation = -32.799935 kcal Electronic energy + Delta-G solvation = -18481.760716 eV Core-core repulsion = 15354.594438 eV Total energy + Delta-G solvation = -3127.166278 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.91732 -39.30046 -36.47614 -36.18899 -33.19577 -31.40018 -30.39213 -29.70896 -26.61122 -24.58696 -23.21983 -22.74645 -21.41923 -19.30417 -17.48117 -16.70881 -16.41020 -15.98949 -15.72744 -14.80794 -14.71217 -14.26935 -13.76736 -13.63483 -13.12899 -12.91905 -12.52898 -12.34002 -12.09960 -11.95366 -11.62279 -11.35872 -11.29107 -10.88033 -10.73530 -10.54334 -10.42576 -9.99598 -9.81641 -9.56396 -9.01105 -8.80071 -8.61852 -8.32816 -7.23385 -5.96160 -3.97064 1.00361 1.06019 2.32255 3.35905 3.40024 3.41962 3.44964 4.07725 4.46253 4.59944 4.77163 5.05935 5.10596 5.35952 5.46372 5.55321 5.72735 5.87640 5.91385 6.16355 6.22105 6.33178 6.34021 6.44045 6.56571 6.69055 6.87145 7.25017 7.27105 7.49573 7.68546 7.89781 8.27181 8.51523 8.60903 9.08209 9.66326 11.10998 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024525 B = 0.005336 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.422595 B = 5246.238546 C = 5939.793610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.217 3.783 4 H 0.034 0.966 5 C -0.486 4.486 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.671 5.671 14 C 0.091 3.909 15 C -0.036 4.036 16 C -0.117 4.117 17 C -0.091 4.091 18 C -0.153 4.153 19 C 0.101 3.899 20 F -0.132 7.132 21 C -0.054 4.054 22 Cl -0.031 7.031 23 H 0.066 0.934 24 H 0.021 0.979 25 H 0.029 0.971 26 H 0.093 0.907 27 H 0.010 0.990 28 H 0.259 0.741 29 H 0.327 0.673 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.076 1.495 -15.974 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.110 3.890 4 H 0.052 0.948 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.302 5.302 14 C -0.038 4.038 15 C -0.038 4.038 16 C -0.136 4.136 17 C -0.109 4.109 18 C -0.172 4.172 19 C 0.081 3.919 20 F -0.110 7.110 21 C -0.082 4.082 22 Cl -0.001 7.001 23 H 0.085 0.915 24 H 0.040 0.960 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.622 2.138 -15.520 15.679 hybrid contribution -0.541 -0.193 0.654 0.870 sum -1.163 1.946 -14.867 15.039 Atomic orbital electron populations 1.21563 0.97651 0.97941 1.01311 1.22115 0.95044 1.01159 1.00202 1.19210 0.96190 0.88542 0.85060 0.94794 1.20998 1.30430 1.11464 0.89620 0.92051 1.24888 0.95586 0.95171 0.98639 1.69872 1.39260 1.24156 1.20384 0.86642 0.79612 0.80076 0.81551 1.20416 1.21551 1.20363 1.60939 1.03429 1.63117 1.02692 1.20980 0.98221 0.96942 0.87649 1.19959 0.95945 0.90896 0.96980 1.21171 0.98685 1.00490 0.93255 1.21018 0.98615 0.94019 0.97287 1.21037 1.02193 0.94457 0.99491 1.17453 1.01644 0.78667 0.94182 1.91515 1.93166 1.31897 1.94435 1.20912 1.03250 0.93091 0.90953 1.98412 1.78161 1.68254 1.55300 0.91492 0.95952 0.95204 0.88908 0.97117 0.93106 0.85482 0.90018 0.94670 0.84719 0.84717 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.39 37.15 0.35 -2.28 16 2 C -0.15 -3.27 5.50 -26.74 -0.15 -3.42 16 3 C 0.22 5.19 2.33 -68.86 -0.16 5.03 16 4 H 0.03 0.90 7.86 -51.93 -0.41 0.50 16 5 C -0.49 -12.94 7.35 -34.44 -0.25 -13.19 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.56 5.22 -17.82 -0.09 1.46 16 8 N -0.90 -24.98 11.39 55.43 0.63 -24.35 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.67 -13.60 6.24 -109.22 -0.68 -14.28 16 14 C 0.09 1.57 5.03 -4.98 -0.03 1.55 16 15 C -0.04 -0.54 5.36 -104.60 -0.56 -1.10 16 16 C -0.12 -1.40 9.67 -39.58 -0.38 -1.78 16 17 C -0.09 -0.92 10.04 -39.59 -0.40 -1.31 16 18 C -0.15 -1.67 10.03 -39.52 -0.40 -2.07 16 19 C 0.10 1.39 7.28 -39.39 -0.29 1.11 16 20 F -0.13 -1.89 16.84 2.25 0.04 -1.85 16 21 C -0.05 -0.83 6.32 -39.44 -0.25 -1.08 16 22 Cl -0.03 -0.52 27.18 -51.86 -1.41 -1.93 16 23 H 0.07 1.54 7.05 -51.93 -0.37 1.17 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.03 0.55 6.42 -51.93 -0.33 0.22 16 26 H 0.09 2.37 6.25 -51.93 -0.32 2.04 16 27 H 0.01 0.21 7.24 -51.93 -0.38 -0.17 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.33 6.40 6.55 -39.29 -0.26 6.14 16 30 H 0.08 1.49 7.34 -51.93 -0.38 1.11 16 31 H 0.04 0.58 7.09 -51.93 -0.37 0.21 16 32 H 0.13 1.39 8.03 -52.49 -0.42 0.97 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 300.23 15.07 4.52 4.52 Total: -1.00 -27.70 300.23 -8.57 -36.27 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.05 Total: 2.38 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.60 Total: -17.09 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.05 Total: -38.63 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.41 Total: -1.93 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.70 -8.57 -36.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577861451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.474 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds