Wall clock time and date at job start Mon Mar 30 2020 01:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47385 * 2 1 4 4 H 1.08996 * 109.47219 * 174.08841 * 3 2 1 5 5 C 1.50707 * 109.47016 * 54.08905 * 3 2 1 6 6 H 1.07996 * 119.99718 * 240.00471 * 5 3 2 7 7 C 1.37878 * 119.99800 * 60.00095 * 5 3 2 8 8 N 1.31512 * 119.99788 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99582 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47448 * 59.99953 * 9 7 5 11 11 H 1.48503 * 109.46599 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47002 * 299.99411 * 9 7 5 13 13 N 1.46901 * 109.47330 * 294.08838 * 3 2 1 14 14 C 1.46895 * 110.99996 * 275.76082 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.23930 * 14 13 3 16 16 C 1.38259 * 119.98848 * 259.72174 * 15 14 13 17 17 C 1.38228 * 120.05768 * 179.72330 * 16 15 14 18 18 C 1.38237 * 120.04820 * 0.55433 * 17 16 15 19 19 C 1.38409 * 119.98756 * 359.71922 * 18 17 16 20 20 F 1.35096 * 120.02927 * 179.97438 * 19 18 17 21 21 C 1.38281 * 119.99614 * 79.99688 * 15 14 13 22 22 Cl 1.73594 * 120.02135 * 0.02562 * 21 15 14 23 23 H 1.09004 * 109.47354 * 298.55668 * 1 2 3 24 24 H 1.08998 * 109.47288 * 178.55809 * 1 2 3 25 25 H 1.09007 * 109.47244 * 58.56233 * 1 2 3 26 26 H 1.08998 * 109.47297 * 120.00574 * 2 1 3 27 27 H 1.09003 * 109.47384 * 240.00093 * 2 1 3 28 28 H 0.97006 * 119.99218 * 180.02562 * 8 7 5 29 29 H 1.00905 * 110.99684 * 39.71469 * 13 3 2 30 30 H 1.09005 * 109.47061 * 296.23201 * 14 13 3 31 31 H 1.08997 * 109.47274 * 56.23717 * 14 13 3 32 32 H 1.07997 * 119.97263 * 0.02562 * 16 15 14 33 33 H 1.08000 * 119.97602 * 180.27065 * 17 16 15 34 34 H 1.08001 * 120.00850 * 179.70480 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1248 1.4442 0.1058 5 6 1.4217 2.1939 1.1508 6 1 0.8149 3.0669 0.9618 7 6 1.6309 1.7666 2.4449 8 7 2.3703 0.7036 2.6750 9 14 0.8640 2.6976 3.8713 10 1 -0.6140 2.6946 3.7269 11 1 1.2374 2.0400 5.1494 12 1 1.3585 4.0978 3.8715 13 7 1.6703 2.0926 -1.2644 14 6 2.6513 1.7942 -2.3163 15 6 2.1920 2.3995 -3.6178 16 6 1.5771 1.6072 -4.5695 17 6 1.1502 2.1620 -5.7613 18 6 1.3477 3.5077 -6.0084 19 6 1.9681 4.3016 -5.0594 20 9 2.1620 5.6167 -5.3002 21 6 2.3908 3.7459 -3.8622 22 17 3.1699 4.7393 -2.6706 23 1 -0.3634 0.4913 0.9027 24 1 -0.3634 -1.0273 -0.0259 25 1 -0.3634 0.5360 -0.8769 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.5171 0.4029 3.5855 29 1 0.7405 1.8246 -1.5504 30 1 3.6184 2.2151 -2.0411 31 1 2.7443 0.7142 -2.4306 32 1 1.4259 0.5549 -4.3795 33 1 0.6661 1.5428 -6.5020 34 1 1.0181 3.9396 -6.9418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577861451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:25 Heat of formation + Delta-G solvation = -48.259650 kcal Electronic energy + Delta-G solvation = -18482.431100 eV Core-core repulsion = 15354.594438 eV Total energy + Delta-G solvation = -3127.836662 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.96864 -40.35088 -38.15448 -37.37886 -34.82403 -33.11022 -31.37987 -31.13013 -28.38932 -26.11475 -24.99628 -23.71899 -22.56477 -21.14727 -18.65668 -18.00978 -17.67041 -17.34685 -16.83753 -16.69999 -16.19577 -15.47845 -15.17493 -14.94855 -14.50516 -14.39212 -14.02603 -13.90627 -13.52983 -13.17861 -13.01669 -12.78450 -12.69552 -12.43836 -12.41400 -12.31706 -11.88893 -11.75412 -11.52211 -11.33661 -10.95556 -10.40274 -9.85177 -9.65232 -8.87346 -8.03197 -6.10230 0.02276 0.08120 1.18158 1.43654 1.44700 1.51799 2.43782 2.50492 3.06412 3.26049 3.58628 3.79007 3.97170 4.14871 4.25565 4.43898 4.54961 4.58923 4.66442 4.75906 4.84184 4.96514 5.01013 5.14832 5.25602 5.35102 5.43427 5.47714 5.73259 5.77596 5.79055 5.87423 6.35445 6.70321 6.87620 7.02217 7.57006 9.01833 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024525 B = 0.005336 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.422595 B = 5246.238546 C = 5939.793610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.225 3.775 4 H -0.003 1.003 5 C -0.496 4.496 6 H 0.049 0.951 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.280 1.280 13 N -0.675 5.675 14 C 0.098 3.902 15 C -0.056 4.056 16 C -0.111 4.111 17 C -0.074 4.074 18 C -0.138 4.138 19 C 0.082 3.918 20 F -0.140 7.140 21 C -0.075 4.075 22 Cl -0.061 7.061 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.258 0.742 29 H 0.333 0.667 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.156 0.844 33 H 0.180 0.820 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 0.688 -18.385 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.177 4.177 3 C 0.117 3.883 4 H 0.015 0.985 5 C -0.535 4.535 6 H 0.067 0.933 7 C -0.182 4.182 8 N -0.560 5.560 9 Si 0.773 3.227 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.206 1.206 13 N -0.306 5.306 14 C -0.031 4.031 15 C -0.057 4.057 16 C -0.130 4.130 17 C -0.091 4.091 18 C -0.157 4.157 19 C 0.062 3.938 20 F -0.119 7.119 21 C -0.103 4.103 22 Cl -0.032 7.032 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.152 0.848 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.173 0.827 33 H 0.197 0.803 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.340 1.336 -17.948 18.149 hybrid contribution -0.010 0.040 1.267 1.267 sum -2.350 1.376 -16.682 16.903 Atomic orbital electron populations 1.21441 0.95953 0.99320 1.00811 1.21941 0.96454 0.99759 0.99580 1.18914 0.93640 0.89552 0.86228 0.98532 1.21221 1.30152 1.11203 0.90932 0.93319 1.25511 0.96069 0.95896 1.00731 1.69997 1.40210 1.25194 1.20584 0.85804 0.79160 0.78701 0.79080 1.19659 1.21206 1.20618 1.60727 1.04374 1.63025 1.02482 1.20836 0.96628 0.97515 0.88109 1.19780 0.98181 0.91001 0.96726 1.21463 0.97285 1.01184 0.93089 1.21503 0.96758 0.93862 0.97000 1.21492 1.00007 0.94602 0.99605 1.17747 1.02756 0.78779 0.94483 1.91491 1.93382 1.32562 1.94437 1.21101 1.04617 0.93275 0.91281 1.98393 1.78958 1.69171 1.56700 0.94317 0.93733 0.93152 0.92172 0.94981 0.93289 0.84806 0.92049 0.93702 0.82667 0.80278 0.81116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.71 9.39 71.98 0.68 -4.03 16 2 C -0.14 -6.16 5.50 30.59 0.17 -5.99 16 3 C 0.23 10.97 2.33 44.17 0.10 11.07 16 4 H 0.00 -0.18 7.86 -2.39 -0.02 -0.20 16 5 C -0.50 -26.97 7.35 25.60 0.19 -26.78 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 7 C 0.02 0.88 5.22 84.66 0.44 1.32 16 8 N -0.92 -52.33 11.39 21.45 0.24 -52.09 16 9 Si 0.95 44.28 29.54 68.60 2.03 46.31 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 N -0.67 -27.45 6.24 -499.46 -3.12 -30.57 16 14 C 0.10 3.37 5.03 85.56 0.43 3.80 16 15 C -0.06 -1.58 5.36 -19.85 -0.11 -1.68 16 16 C -0.11 -2.25 9.67 22.27 0.22 -2.04 16 17 C -0.07 -1.10 10.04 22.27 0.22 -0.87 16 18 C -0.14 -2.46 10.03 22.31 0.22 -2.23 16 19 C 0.08 2.14 7.28 22.39 0.16 2.30 16 20 F -0.14 -3.91 16.84 44.97 0.76 -3.15 16 21 C -0.07 -2.27 6.32 22.36 0.14 -2.13 16 22 Cl -0.06 -2.15 27.18 -2.72 -0.07 -2.22 16 23 H 0.04 1.75 7.05 -2.38 -0.02 1.73 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.77 6.42 -2.38 -0.02 1.76 16 26 H 0.06 3.11 6.25 -2.39 -0.01 3.10 16 27 H 0.03 1.27 7.24 -2.39 -0.02 1.25 16 28 H 0.26 14.17 8.31 -92.70 -0.77 13.40 16 29 H 0.33 12.68 6.55 -89.69 -0.59 12.09 16 30 H 0.06 2.33 7.34 -2.38 -0.02 2.31 16 31 H 0.04 1.43 7.09 -2.39 -0.02 1.42 16 32 H 0.16 2.50 8.03 -2.91 -0.02 2.48 16 33 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -62.11 300.23 3.24 -58.87 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.53 Total: 10.12 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 2.87 Total: -27.27 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -2.87 Total: -82.66 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.76 Total: -3.15 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.07 Total: -2.22 kcal Total: -62.11 3.24 -58.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577861451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.609 kcal (2) G-P(sol) polarization free energy of solvation -62.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds