Wall clock time and date at job start Mon Mar 30 2020 00:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36940 * 120.00103 * 2 1 4 4 H 1.07998 * 119.99872 * 202.53235 * 3 2 1 5 5 C 1.38813 * 119.99660 * 22.52645 * 3 2 1 6 6 N 1.31615 * 120.00391 * 11.40343 * 5 3 2 7 7 Si 1.86801 * 119.99468 * 191.40006 * 5 3 2 8 8 H 1.48506 * 109.47265 * 60.00299 * 7 5 3 9 9 H 1.48503 * 109.47259 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47230 * 299.99972 * 7 5 3 11 11 C 1.46500 * 119.99973 * 179.97438 * 2 1 3 12 12 C 1.50696 * 109.47235 * 270.00702 * 11 2 1 13 13 C 1.38293 * 119.98391 * 259.99853 * 12 11 2 14 14 C 1.38201 * 120.14211 * 179.97438 * 13 12 11 15 15 C 1.38289 * 120.14591 * 0.02562 * 14 13 12 16 16 C 1.38502 * 120.02709 * 359.97438 * 15 14 13 17 17 C 1.38502 * 119.98782 * 79.72281 * 12 11 2 18 18 O 1.36496 * 131.53793 * 0.02803 * 17 12 11 19 19 C 1.43993 * 105.48513 * 197.28931 * 18 17 12 20 20 F 1.39896 * 110.56976 * 91.43553 * 19 18 17 21 21 F 1.39899 * 110.56932 * 214.15905 * 19 18 17 22 22 O 1.36504 * 131.53844 * 180.02562 * 16 15 14 23 23 H 1.08997 * 109.47449 * 274.06075 * 1 2 3 24 24 H 1.09007 * 109.46751 * 34.05931 * 1 2 3 25 25 H 1.08997 * 109.47018 * 154.05284 * 1 2 3 26 26 H 0.97004 * 119.99878 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.47068 * 30.00354 * 11 2 1 28 28 H 1.08996 * 109.47232 * 150.00496 * 11 2 1 29 29 H 1.08001 * 119.92443 * 359.97438 * 13 12 11 30 30 H 1.08006 * 119.92902 * 179.97438 * 14 13 12 31 31 H 1.08001 * 119.98426 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1679 1.2216 -0.3584 5 6 1.5351 2.3422 0.4606 6 7 0.3878 2.2672 1.1011 7 14 2.3365 4.0046 0.1713 8 1 2.4861 4.2348 -1.2882 9 1 1.4866 5.0724 0.7567 10 1 3.6741 4.0282 0.8158 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 3.6834 -1.4826 2.0038 14 6 3.9170 -1.8792 3.3069 15 6 2.9172 -2.4990 4.0341 16 6 1.6781 -2.7232 3.4573 17 6 1.4407 -2.3182 2.1457 18 8 0.1568 -2.6423 1.8147 19 6 -0.5164 -2.8727 3.0665 20 9 -1.1072 -1.6928 3.5314 21 9 -1.4767 -3.8809 2.9299 22 8 0.5432 -3.3026 3.9470 23 1 -0.3634 0.0728 1.0250 24 1 -0.3633 0.8514 -0.5756 25 1 -0.3633 -0.9241 -0.4496 26 1 -0.0419 3.0753 1.4226 27 1 1.6085 -2.0286 -0.5130 28 1 3.1500 -1.1386 -0.5132 29 1 4.4668 -0.9992 1.4390 30 1 4.8828 -1.7056 3.7581 31 1 3.1027 -2.8083 5.0521 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591257606.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:20 Heat of formation + Delta-G solvation = -128.688715 kcal Electronic energy + Delta-G solvation = -21540.606880 eV Core-core repulsion = 17845.113083 eV Total energy + Delta-G solvation = -3695.493797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.63395 -49.09331 -43.22775 -39.18933 -38.09768 -37.16698 -33.76469 -31.76868 -30.78606 -28.05840 -27.45424 -26.35486 -24.36845 -23.97504 -22.25490 -20.35522 -20.09994 -19.81807 -18.79329 -18.15968 -17.03351 -16.78265 -16.55585 -16.04708 -15.82262 -15.54801 -15.45789 -15.33864 -15.25624 -15.04798 -14.92392 -14.63699 -14.28020 -13.82713 -13.16084 -13.02328 -12.96459 -12.66305 -12.51408 -12.23840 -12.15043 -11.92233 -11.87908 -10.63893 -9.75515 -9.48065 -8.85413 -7.82195 -5.31651 -0.00099 0.16784 0.58869 1.21997 1.48940 1.52012 1.58038 2.49136 2.62440 2.75504 2.90583 3.22895 3.35447 3.71493 3.80034 3.99902 4.05363 4.28674 4.35216 4.58326 4.79019 4.88457 4.99161 5.06786 5.20486 5.26115 5.34381 5.53738 5.62341 5.67974 5.91688 6.29807 7.11529 7.81456 8.28633 9.21587 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.007287 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.264134 B = 3841.647912 C = 4414.241394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.604 5.604 3 C -0.259 4.259 4 H 0.087 0.913 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.277 1.277 9 H -0.302 1.302 10 H -0.268 1.268 11 C 0.178 3.822 12 C -0.069 4.069 13 C -0.092 4.092 14 C -0.089 4.089 15 C -0.092 4.092 16 C -0.007 4.007 17 C 0.005 3.995 18 O -0.299 6.299 19 C 0.566 3.434 20 F -0.164 7.164 21 F -0.117 7.117 22 O -0.294 6.294 23 H -0.006 1.006 24 H 0.021 0.979 25 H 0.017 0.983 26 H 0.246 0.754 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.160 0.840 30 H 0.185 0.815 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.608 -10.682 4.588 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.325 5.325 3 C -0.389 4.389 4 H 0.104 0.896 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.799 3.201 8 H -0.203 1.203 9 H -0.229 1.229 10 H -0.194 1.194 11 C 0.052 3.948 12 C -0.073 4.073 13 C -0.111 4.111 14 C -0.106 4.106 15 C -0.111 4.111 16 C -0.050 4.050 17 C -0.039 4.039 18 O -0.218 6.218 19 C 0.457 3.543 20 F -0.146 7.146 21 F -0.098 7.098 22 O -0.214 6.214 23 H 0.013 0.987 24 H 0.039 0.961 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.178 0.822 30 H 0.203 0.797 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.271 -10.700 4.582 13.221 hybrid contribution -1.070 0.980 0.135 1.457 sum 5.201 -9.720 4.717 11.991 Atomic orbital electron populations 1.20427 0.83078 0.95299 0.96967 1.44280 1.01812 1.01492 1.84914 1.19620 0.98828 0.85724 1.34754 0.89581 1.25896 0.98336 1.02198 0.98465 1.70283 1.19575 1.27523 1.41286 0.85278 0.77803 0.79094 0.77876 1.20302 1.22876 1.19361 1.20120 0.97721 0.87172 0.89796 1.20452 0.91548 0.94149 1.01113 1.21316 0.95141 0.98313 0.96315 1.21484 0.99978 0.96020 0.93130 1.20510 0.87910 1.00685 1.01977 1.20030 0.90252 1.02305 0.92434 1.19689 0.84710 1.04667 0.94829 1.87562 1.22533 1.84960 1.26786 1.22038 0.80107 0.74473 0.77654 1.93263 1.84682 1.48490 1.88200 1.93203 1.62455 1.59168 1.94948 1.87568 1.15813 1.66699 1.51342 0.98726 0.96056 0.96456 0.94495 0.92658 0.89626 0.82249 0.79733 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.85 8.95 127.77 1.14 10.99 16 2 N -0.60 -30.10 2.91 -731.31 -2.13 -32.22 16 3 C -0.26 -13.62 9.67 84.03 0.81 -12.81 16 4 H 0.09 4.17 7.85 -2.91 -0.02 4.14 16 5 C -0.05 -2.97 5.13 84.86 0.44 -2.54 16 6 N -0.94 -56.41 10.60 21.65 0.23 -56.18 16 7 Si 0.97 44.00 29.57 68.60 2.03 46.03 16 8 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 9 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 C 0.18 7.03 5.84 85.63 0.50 7.53 16 12 C -0.07 -2.54 5.47 -19.79 -0.11 -2.65 16 13 C -0.09 -2.67 9.66 22.27 0.22 -2.46 16 14 C -0.09 -2.04 10.04 22.27 0.22 -1.82 16 15 C -0.09 -2.39 10.06 22.34 0.22 -2.17 16 16 C -0.01 -0.25 7.15 22.59 0.16 -0.08 16 17 C 0.00 0.19 6.84 22.59 0.15 0.34 16 18 O -0.30 -12.30 11.28 -76.00 -0.86 -13.16 16 19 C 0.57 21.28 3.70 113.37 0.42 21.69 16 20 F -0.16 -6.76 17.58 44.97 0.79 -5.96 16 21 F -0.12 -3.87 17.56 44.97 0.79 -3.08 16 22 O -0.29 -10.36 11.37 -76.10 -0.87 -11.23 16 23 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 24 H 0.02 1.18 7.19 -2.38 -0.02 1.16 16 25 H 0.02 0.81 7.85 -2.39 -0.02 0.79 16 26 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.06 2.11 7.86 -2.39 -0.02 2.09 16 28 H 0.09 2.94 7.89 -2.39 -0.02 2.92 16 29 H 0.16 3.90 8.03 -2.91 -0.02 3.87 16 30 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -66.72 283.22 5.34 -61.38 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: 1.17 Total: -1.62 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 4.18 Total: 16.04 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -1.90 Total: -88.40 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -1.72 Total: -24.39 kcal Atomic # 9 Polarization: -10.62 SS G_CDS: 1.58 Total: -9.04 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -66.72 5.34 -61.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591257606.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.305 kcal (2) G-P(sol) polarization free energy of solvation -66.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds