Wall clock time and date at job start Mon Mar 30 2020 01:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00280 * 2 1 4 4 H 1.48495 * 109.47076 * 239.99846 * 3 2 1 5 5 H 1.48501 * 109.46889 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47025 * 119.99904 * 3 2 1 7 7 C 1.37884 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99973 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.64154 * 300.69861 * 9 7 2 11 11 C 1.55162 * 110.87503 * 63.94369 * 9 7 2 12 12 C 1.54909 * 101.58160 * 153.93701 * 11 9 7 13 13 N 1.47431 * 104.83077 * 322.99536 * 12 11 9 14 14 C 1.34787 * 125.64368 * 204.16691 * 13 12 11 15 15 O 1.21281 * 119.99356 * 179.97438 * 14 13 12 16 16 C 1.50695 * 119.99922 * 359.95342 * 14 13 12 17 17 S 1.81405 * 109.46730 * 180.02562 * 16 14 13 18 18 C 1.81400 * 102.99815 * 180.02562 * 17 16 14 19 19 C 1.53000 * 117.49756 * 243.61833 * 18 17 16 20 20 C 1.53002 * 117.49688 * 174.99670 * 18 17 16 21 21 C 1.47016 * 108.70548 * 24.12483 * 13 12 11 22 22 H 0.97002 * 119.99949 * 0.02562 * 1 2 3 23 23 H 0.96705 * 113.99788 * 56.85902 * 10 9 7 24 24 H 1.08993 * 111.00723 * 272.00947 * 11 9 7 25 25 H 1.08997 * 110.99941 * 35.86765 * 11 9 7 26 26 H 1.08997 * 110.36577 * 204.15858 * 12 11 9 27 27 H 1.08996 * 110.46105 * 81.87485 * 12 11 9 28 28 H 1.08995 * 109.47191 * 300.00182 * 16 14 13 29 29 H 1.08996 * 109.47052 * 60.00673 * 16 14 13 30 30 H 1.08995 * 115.55044 * 29.33231 * 18 17 16 31 31 H 1.08997 * 117.50162 * 0.02562 * 19 18 17 32 32 H 1.09005 * 117.49726 * 145.02156 * 19 18 17 33 33 H 1.09001 * 117.50336 * 214.97708 * 20 18 17 34 34 H 1.08997 * 117.50037 * 0.02562 * 20 18 17 35 35 H 1.08998 * 109.88597 * 239.52646 * 21 13 12 36 36 H 1.09004 * 109.88048 * 118.35934 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4074 -2.5938 1.1501 11 6 0.4236 -2.6599 -1.3022 12 6 0.3243 -4.2013 -1.4194 13 7 1.6294 -4.7004 -0.9490 14 6 2.1833 -5.8838 -1.2798 15 8 3.2673 -6.1922 -0.8317 16 6 1.4555 -6.8238 -2.2058 17 16 2.4517 -8.3193 -2.4545 18 6 1.4276 -9.3097 -3.5775 19 6 0.9039 -10.6504 -3.0586 20 6 2.0199 -10.6181 -4.1048 21 6 2.2269 -3.6931 -0.0604 22 1 -0.4850 0.8401 -0.0004 23 1 -0.2248 -1.8670 1.2350 24 1 -0.5642 -2.2118 -1.1954 25 1 0.9528 -2.2365 -2.1558 26 1 0.1580 -4.4929 -2.4564 27 1 -0.4775 -4.5807 -0.7860 28 1 0.4958 -7.0959 -1.7666 29 1 1.2902 -6.3333 -3.1650 30 1 0.7826 -8.7427 -4.2487 31 1 1.1743 -10.9371 -2.0424 32 1 -0.0861 -10.9656 -3.3883 33 1 1.7642 -10.9123 -5.1227 34 1 3.0247 -10.8841 -3.7766 35 1 3.1866 -3.3674 -0.4615 36 1 2.3625 -4.1122 0.9367 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:56 Heat of formation + Delta-G solvation = -54.792458 kcal Electronic energy + Delta-G solvation = -18577.530714 eV Core-core repulsion = 15574.914780 eV Total energy + Delta-G solvation = -3002.615934 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.51474 -37.33186 -36.88903 -34.40517 -32.22880 -30.75346 -29.23254 -28.07988 -25.01166 -23.06705 -22.67043 -22.34464 -19.87590 -18.88496 -17.35977 -16.95145 -16.62110 -15.87439 -15.64870 -15.01898 -14.71547 -14.34855 -14.09553 -13.98283 -13.08576 -12.93113 -12.33960 -12.16214 -12.04113 -11.83961 -11.61823 -11.46728 -11.41009 -11.24966 -10.92555 -10.76365 -10.68191 -10.55748 -10.17570 -9.96797 -9.61402 -9.40256 -8.71891 -8.28640 -8.12345 -7.59462 -6.34179 -4.41953 1.42123 2.46350 2.90632 3.19414 3.24127 3.27540 3.43404 3.47000 4.23037 4.52287 4.63301 4.68316 4.73911 4.93869 5.01521 5.22669 5.33698 5.41833 5.46435 5.67392 5.68100 5.83092 5.83413 5.93332 6.12699 6.39550 6.61648 6.82592 6.88748 7.23896 7.28144 7.68284 7.94386 7.97216 8.46889 8.60702 9.25948 9.36632 10.73356 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.046684 B = 0.003673 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.629671 B = 7621.284053 C = 7769.302850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.586 6.586 11 C -0.135 4.135 12 C 0.093 3.907 13 N -0.604 5.604 14 C 0.538 3.462 15 O -0.535 6.535 16 C -0.123 4.123 17 S -0.133 6.133 18 C -0.161 4.161 19 C -0.162 4.162 20 C -0.146 4.146 21 C 0.124 3.876 22 H 0.270 0.730 23 H 0.385 0.615 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 -13.524 -7.895 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.396 6.396 11 C -0.174 4.174 12 C -0.029 4.029 13 N -0.337 5.337 14 C 0.324 3.676 15 O -0.413 6.413 16 C -0.274 4.274 17 S 0.097 5.903 18 C -0.290 4.290 19 C -0.203 4.203 20 C -0.185 4.185 21 C 0.002 3.998 22 H 0.080 0.920 23 H 0.236 0.764 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.011 -14.369 -7.129 16.072 hybrid contribution -1.368 1.882 -0.811 2.464 sum -2.379 -12.487 -7.940 14.987 Atomic orbital electron populations 1.69627 1.05960 1.27876 1.50216 1.24995 0.95054 0.99583 0.93380 0.86446 0.79536 0.81907 0.78956 1.20028 1.21081 1.19929 1.21497 0.93749 0.90162 1.52088 0.91694 1.19437 0.86497 0.90710 0.82572 1.86112 1.53624 1.52642 1.47218 1.23305 1.02994 0.90006 1.01106 1.22550 0.84672 0.97938 0.97759 1.48552 1.20980 1.16731 1.47474 1.19153 0.85654 0.81007 0.81800 1.90712 1.20966 1.74653 1.55006 1.23520 1.02876 0.97354 1.03651 1.87142 1.27723 1.15740 1.59699 1.24274 1.06575 0.93098 1.05091 1.23283 0.98753 0.98396 0.99868 1.22906 0.99052 0.97067 0.99460 1.22121 0.97139 0.87775 0.92758 0.92044 0.76371 0.89376 0.91373 0.92238 0.91697 0.87361 0.87428 0.86531 0.87657 0.88389 0.87919 0.88005 0.90812 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.55 10.68 55.43 0.59 -21.96 16 2 C 0.07 1.83 5.27 -17.82 -0.09 1.73 16 3 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -13.82 8.22 -34.44 -0.28 -14.10 16 8 H 0.06 1.68 7.55 -52.48 -0.40 1.28 16 9 C 0.25 5.88 0.85 -89.94 -0.08 5.80 16 10 O -0.59 -14.50 13.09 -35.23 -0.46 -14.96 16 11 C -0.14 -2.82 5.58 -24.58 -0.14 -2.96 16 12 C 0.09 1.62 6.68 -2.53 -0.02 1.61 16 13 N -0.60 -11.79 3.33 -170.52 -0.57 -12.36 16 14 C 0.54 10.13 7.87 -10.98 -0.09 10.05 16 15 O -0.54 -11.93 16.19 5.56 0.09 -11.84 16 16 C -0.12 -1.73 5.43 36.00 0.20 -1.53 16 17 S -0.13 -1.88 21.09 -107.50 -2.27 -4.15 16 18 C -0.16 -1.63 6.36 -26.73 -0.17 -1.80 16 19 C -0.16 -1.37 10.30 -26.73 -0.28 -1.65 16 20 C -0.15 -1.22 10.30 -26.73 -0.28 -1.49 16 21 C 0.12 2.77 6.22 -3.07 -0.02 2.75 16 22 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 23 H 0.39 9.56 7.17 45.56 0.33 9.88 16 24 H 0.09 1.90 7.66 -51.93 -0.40 1.51 16 25 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 26 H 0.06 0.84 7.48 -51.93 -0.39 0.45 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.11 1.30 7.85 -51.93 -0.41 0.89 16 30 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.68 7.65 -51.93 -0.40 1.29 16 36 H 0.06 1.47 8.07 -51.93 -0.42 1.05 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -28.41 315.07 -8.72 -37.12 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -4.59 Total: 10.05 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.24 Total: -1.60 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.02 Total: -34.32 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.37 Total: -26.80 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: -1.88 SS G_CDS: -2.27 Total: -4.15 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.41 -8.72 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.669 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds