Wall clock time and date at job start Mon Mar 30 2020 01:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00280 * 2 1 4 4 H 1.48495 * 109.47076 * 239.99846 * 3 2 1 5 5 H 1.48501 * 109.46889 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47025 * 119.99904 * 3 2 1 7 7 C 1.37884 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99973 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.64154 * 300.69861 * 9 7 2 11 11 C 1.55162 * 110.87503 * 63.94369 * 9 7 2 12 12 C 1.54909 * 101.58160 * 153.93701 * 11 9 7 13 13 N 1.47431 * 104.83077 * 322.99536 * 12 11 9 14 14 C 1.34787 * 125.64368 * 204.16691 * 13 12 11 15 15 O 1.21281 * 119.99356 * 179.97438 * 14 13 12 16 16 C 1.50695 * 119.99922 * 359.95342 * 14 13 12 17 17 S 1.81405 * 109.46730 * 180.02562 * 16 14 13 18 18 C 1.81400 * 102.99815 * 180.02562 * 17 16 14 19 19 C 1.53000 * 117.49756 * 243.61833 * 18 17 16 20 20 C 1.53002 * 117.49688 * 174.99670 * 18 17 16 21 21 C 1.47016 * 108.70548 * 24.12483 * 13 12 11 22 22 H 0.97002 * 119.99949 * 0.02562 * 1 2 3 23 23 H 0.96705 * 113.99788 * 56.85902 * 10 9 7 24 24 H 1.08993 * 111.00723 * 272.00947 * 11 9 7 25 25 H 1.08997 * 110.99941 * 35.86765 * 11 9 7 26 26 H 1.08997 * 110.36577 * 204.15858 * 12 11 9 27 27 H 1.08996 * 110.46105 * 81.87485 * 12 11 9 28 28 H 1.08995 * 109.47191 * 300.00182 * 16 14 13 29 29 H 1.08996 * 109.47052 * 60.00673 * 16 14 13 30 30 H 1.08995 * 115.55044 * 29.33231 * 18 17 16 31 31 H 1.08997 * 117.50162 * 0.02562 * 19 18 17 32 32 H 1.09005 * 117.49726 * 145.02156 * 19 18 17 33 33 H 1.09001 * 117.50336 * 214.97708 * 20 18 17 34 34 H 1.08997 * 117.50037 * 0.02562 * 20 18 17 35 35 H 1.08998 * 109.88597 * 239.52646 * 21 13 12 36 36 H 1.09004 * 109.88048 * 118.35934 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4074 -2.5938 1.1501 11 6 0.4236 -2.6599 -1.3022 12 6 0.3243 -4.2013 -1.4194 13 7 1.6294 -4.7004 -0.9490 14 6 2.1833 -5.8838 -1.2798 15 8 3.2673 -6.1922 -0.8317 16 6 1.4555 -6.8238 -2.2058 17 16 2.4517 -8.3193 -2.4545 18 6 1.4276 -9.3097 -3.5775 19 6 0.9039 -10.6504 -3.0586 20 6 2.0199 -10.6181 -4.1048 21 6 2.2269 -3.6931 -0.0604 22 1 -0.4850 0.8401 -0.0004 23 1 -0.2248 -1.8670 1.2350 24 1 -0.5642 -2.2118 -1.1954 25 1 0.9528 -2.2365 -2.1558 26 1 0.1580 -4.4929 -2.4564 27 1 -0.4775 -4.5807 -0.7860 28 1 0.4958 -7.0959 -1.7666 29 1 1.2902 -6.3333 -3.1650 30 1 0.7826 -8.7427 -4.2487 31 1 1.1743 -10.9371 -2.0424 32 1 -0.0861 -10.9656 -3.3883 33 1 1.7642 -10.9123 -5.1227 34 1 3.0247 -10.8841 -3.7766 35 1 3.1866 -3.3674 -0.4615 36 1 2.3625 -4.1122 0.9367 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592852815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:56 Heat of formation + Delta-G solvation = -73.133845 kcal Electronic energy + Delta-G solvation = -18578.326056 eV Core-core repulsion = 15574.914780 eV Total energy + Delta-G solvation = -3003.411276 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.09229 -39.02494 -37.57867 -36.16828 -34.18861 -32.25312 -30.74776 -29.73369 -26.84110 -24.17704 -23.60388 -23.28741 -21.64198 -20.40706 -19.21919 -18.24145 -17.74609 -17.18443 -16.94759 -16.85885 -16.06271 -15.96153 -15.48743 -15.10428 -14.74381 -14.37286 -13.87167 -13.64943 -13.34009 -13.31522 -13.16342 -13.10776 -12.67989 -12.46476 -12.43688 -12.30084 -12.02735 -11.97561 -11.46214 -11.31514 -11.09015 -10.90702 -10.64891 -10.16629 -9.72035 -8.64610 -8.26865 -6.41293 0.40728 1.42453 1.44348 1.45618 1.51368 1.53963 1.99494 2.38759 2.76299 2.98465 3.38762 3.81291 3.83737 3.92716 3.98261 4.03711 4.05506 4.19623 4.24322 4.39300 4.55726 4.63486 4.75213 4.81702 4.87651 5.03698 5.14298 5.18035 5.22646 5.44327 5.51461 5.74605 6.03971 6.46654 6.61966 6.97874 7.29411 7.40659 8.78979 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.046684 B = 0.003673 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.629671 B = 7621.284053 C = 7769.302850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.039 3.961 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.566 4.566 8 H 0.051 0.949 9 C 0.236 3.764 10 O -0.594 6.594 11 C -0.127 4.127 12 C 0.102 3.898 13 N -0.607 5.607 14 C 0.532 3.468 15 O -0.577 6.577 16 C -0.104 4.104 17 S -0.201 6.201 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.140 4.140 21 C 0.129 3.871 22 H 0.273 0.727 23 H 0.382 0.618 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 -14.429 -9.759 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.163 4.163 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.605 4.605 8 H 0.069 0.931 9 C 0.196 3.804 10 O -0.403 6.403 11 C -0.166 4.166 12 C -0.019 4.019 13 N -0.340 5.340 14 C 0.321 3.679 15 O -0.458 6.458 16 C -0.254 4.254 17 S 0.029 5.971 18 C -0.289 4.289 19 C -0.195 4.195 20 C -0.179 4.179 21 C 0.006 3.994 22 H 0.083 0.917 23 H 0.233 0.767 24 H 0.099 0.901 25 H 0.078 0.922 26 H 0.122 0.878 27 H 0.094 0.906 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.114 0.886 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.610 -15.286 -9.007 17.934 hybrid contribution -0.857 2.114 -0.211 2.291 sum -3.466 -13.172 -9.218 16.447 Atomic orbital electron populations 1.69676 1.06464 1.28591 1.49653 1.25569 0.95897 1.01867 0.92930 0.85605 0.78524 0.78894 0.78561 1.19860 1.20125 1.20421 1.21714 0.93462 0.91832 1.53447 0.93077 1.19575 0.86977 0.90343 0.83516 1.86097 1.53674 1.52422 1.48157 1.23085 1.01650 0.92864 0.98958 1.22606 0.83691 0.95037 1.00611 1.48596 1.21624 1.16671 1.47095 1.20010 0.85319 0.80927 0.81680 1.90692 1.23041 1.75464 1.56592 1.23396 1.02539 0.95920 1.03592 1.87415 1.30488 1.17396 1.61843 1.24304 1.06807 0.93006 1.04820 1.23356 0.99913 0.96667 0.99561 1.23046 0.98733 0.95380 1.00747 1.21818 0.96686 0.88368 0.92492 0.91728 0.76716 0.90124 0.92217 0.87777 0.90557 0.84875 0.84647 0.84708 0.88622 0.86060 0.85489 0.88937 0.92244 0.93864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.16 10.68 21.45 0.23 -44.93 16 2 C 0.04 1.97 5.27 84.66 0.45 2.41 16 3 Si 0.96 40.87 29.54 68.60 2.03 42.90 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.57 -29.75 8.22 25.60 0.21 -29.54 16 8 H 0.05 2.74 7.55 -2.91 -0.02 2.72 16 9 C 0.24 11.32 0.85 -10.35 -0.01 11.31 16 10 O -0.59 -29.76 13.09 -148.98 -1.95 -31.71 16 11 C -0.13 -5.19 5.58 31.99 0.18 -5.01 16 12 C 0.10 3.29 6.68 86.85 0.58 3.87 16 13 N -0.61 -23.19 3.33 -811.79 -2.70 -25.89 16 14 C 0.53 19.59 7.87 87.65 0.69 20.28 16 15 O -0.58 -26.17 16.19 -3.03 -0.05 -26.22 16 16 C -0.10 -2.65 5.43 71.23 0.39 -2.26 16 17 S -0.20 -5.45 21.09 -56.49 -1.19 -6.64 16 18 C -0.16 -2.78 6.36 30.59 0.19 -2.58 16 19 C -0.15 -2.15 10.30 30.59 0.31 -1.83 16 20 C -0.14 -1.95 10.30 30.60 0.32 -1.63 16 21 C 0.13 5.95 6.22 86.73 0.54 6.49 16 22 H 0.27 12.99 8.31 -92.71 -0.77 12.21 16 23 H 0.38 19.19 7.17 -74.05 -0.53 18.66 16 24 H 0.08 3.41 7.66 -2.39 -0.02 3.39 16 25 H 0.06 2.51 8.04 -2.39 -0.02 2.49 16 26 H 0.10 2.47 7.48 -2.39 -0.02 2.46 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.14 2.70 7.85 -2.39 -0.02 2.68 16 30 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 2.84 7.65 -2.39 -0.02 2.83 16 36 H 0.04 2.11 8.07 -2.38 -0.02 2.09 16 Total: -1.00 -62.83 315.07 0.76 -62.07 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.55 Total: 28.91 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 3.85 Total: 1.51 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -2.47 Total: -70.81 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -2.00 Total: -57.92 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -1.19 Total: -6.64 kcal Total: -62.83 0.76 -62.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.062 kcal (2) G-P(sol) polarization free energy of solvation -62.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds