Wall clock time and date at job start Mon Mar 30 2020 01:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99822 * 2 1 4 4 H 1.48500 * 109.47460 * 265.00479 * 3 2 1 5 5 H 1.48500 * 109.47140 * 25.00551 * 3 2 1 6 6 H 1.48502 * 109.46990 * 145.00292 * 3 2 1 7 7 C 1.37879 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99492 * 185.06340 * 7 2 1 9 9 C 1.50699 * 119.99951 * 5.05750 * 7 2 1 10 10 O 1.42896 * 110.88923 * 60.78755 * 9 7 2 11 11 C 1.55155 * 111.00567 * 296.90076 * 9 7 2 12 12 C 1.54318 * 102.94406 * 206.42745 * 11 9 7 13 13 N 1.47022 * 107.27251 * 22.19562 * 12 11 9 14 14 C 1.34773 * 125.65005 * 181.02621 * 13 12 11 15 15 O 1.21280 * 120.00347 * 180.02562 * 14 13 12 16 16 C 1.50701 * 120.00010 * 0.02562 * 14 13 12 17 17 S 1.81395 * 109.47357 * 180.02562 * 16 14 13 18 18 C 1.81398 * 103.00279 * 180.02562 * 17 16 14 19 19 C 1.52998 * 117.49955 * 184.99833 * 18 17 16 20 20 C 1.52993 * 60.03477 * 252.47445 * 19 18 17 21 21 C 1.47426 * 108.70202 * 1.28550 * 13 12 11 22 22 H 0.97000 * 119.99773 * 359.97438 * 1 2 3 23 23 H 0.96704 * 114.00038 * 290.74208 * 10 9 7 24 24 H 1.09006 * 110.71388 * 88.06401 * 11 9 7 25 25 H 1.09005 * 110.87413 * 324.86650 * 11 9 7 26 26 H 1.09003 * 109.87879 * 262.77406 * 12 11 9 27 27 H 1.09000 * 109.88222 * 141.61568 * 12 11 9 28 28 H 1.08996 * 109.47333 * 60.00124 * 16 14 13 29 29 H 1.09000 * 109.46935 * 300.00383 * 16 14 13 30 30 H 1.09001 * 115.55028 * 330.67062 * 18 17 16 31 31 H 1.08996 * 117.49972 * 359.97438 * 19 18 17 32 32 H 1.08998 * 117.49898 * 144.97236 * 19 18 17 33 33 H 1.08999 * 117.50191 * 107.49986 * 20 19 18 34 34 H 1.09004 * 117.50329 * 252.52511 * 20 19 18 35 35 H 1.08999 * 110.36413 * 94.48236 * 21 13 12 36 36 H 1.08995 * 110.36627 * 216.80515 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6022 1.9855 -1.3947 5 1 1.3978 2.6808 0.5918 6 1 3.4899 1.4730 0.8030 7 6 2.0046 -1.1941 -0.0005 8 1 3.0814 -1.1959 0.0820 9 6 1.2554 -2.4966 -0.1162 10 8 0.5279 -2.5586 -1.3445 11 6 0.3139 -2.7064 1.0991 12 6 0.1936 -4.2427 1.1819 13 7 1.3660 -4.8098 0.4997 14 6 1.6215 -6.1231 0.3379 15 8 2.6246 -6.4786 -0.2438 16 6 0.6609 -7.1501 0.8797 17 16 1.2797 -8.8137 0.5056 18 6 0.0102 -9.8923 1.2236 19 6 0.2666 -11.4004 1.1961 20 6 -0.7824 -10.7865 0.2668 21 6 2.2189 -3.7039 0.0275 22 1 -0.4850 0.8401 0.0004 23 1 -0.2207 -1.9481 -1.3896 24 1 -0.6600 -2.2526 0.9151 25 1 0.7592 -2.3047 2.0093 26 1 -0.7193 -4.5703 0.6845 27 1 0.1832 -4.5580 2.2253 28 1 -0.3165 -7.0131 0.4171 29 1 0.5718 -7.0302 1.9594 30 1 -0.5174 -9.4872 2.0871 31 1 1.1978 -11.7445 0.7461 32 1 -0.0919 -11.9874 2.0416 33 1 -0.5413 -10.7266 -0.7945 34 1 -1.8311 -10.9691 0.5013 35 1 2.9972 -3.4862 0.7589 36 1 2.6621 -3.9519 -0.9369 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:58 Heat of formation + Delta-G solvation = -54.088593 kcal Electronic energy + Delta-G solvation = -18600.352232 eV Core-core repulsion = 15597.766820 eV Total energy + Delta-G solvation = -3002.585412 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.49900 -37.30848 -36.87243 -34.34807 -32.27785 -30.75055 -29.23233 -28.07465 -24.99744 -23.05999 -22.65827 -22.29559 -19.89097 -18.90794 -17.25115 -16.95489 -16.63293 -15.84462 -15.61472 -14.97908 -14.73829 -14.34276 -14.07055 -14.03157 -13.19193 -12.82595 -12.35367 -12.27858 -12.01516 -11.83970 -11.73482 -11.37944 -11.33075 -11.23085 -10.93388 -10.75293 -10.69634 -10.48271 -10.08365 -9.95768 -9.58293 -9.42340 -8.72816 -8.28000 -8.09727 -7.58247 -6.31545 -4.38677 1.43636 2.47792 2.92652 3.19586 3.26371 3.29037 3.44381 3.49397 4.24972 4.53231 4.64394 4.69266 4.75402 4.96540 5.02557 5.25016 5.34554 5.42795 5.47108 5.64080 5.68564 5.75810 5.84707 5.93290 6.19708 6.36944 6.58234 6.81411 6.86817 7.20616 7.27801 7.69912 7.96862 8.02275 8.48734 8.63447 9.25249 9.33448 10.76009 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.053643 B = 0.003659 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.843188 B = 7650.422612 C = 7859.826098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.580 6.580 11 C -0.136 4.136 12 C 0.095 3.905 13 N -0.603 5.603 14 C 0.539 3.461 15 O -0.536 6.536 16 C -0.123 4.123 17 S -0.133 6.133 18 C -0.162 4.162 19 C -0.146 4.146 20 C -0.162 4.162 21 C 0.121 3.879 22 H 0.267 0.733 23 H 0.378 0.622 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 -14.231 4.976 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.387 6.387 11 C -0.174 4.174 12 C -0.028 4.028 13 N -0.336 5.336 14 C 0.325 3.675 15 O -0.414 6.414 16 C -0.274 4.274 17 S 0.097 5.903 18 C -0.291 4.291 19 C -0.185 4.185 20 C -0.203 4.203 21 C -0.001 4.001 22 H 0.077 0.923 23 H 0.227 0.773 24 H 0.106 0.894 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.962 -15.074 4.004 15.875 hybrid contribution -1.384 1.850 1.038 2.533 sum -4.346 -13.224 5.042 14.805 Atomic orbital electron populations 1.69753 1.05986 1.27625 1.49938 1.24972 0.95008 0.99515 0.93364 0.86436 0.79735 0.82281 0.78544 1.20294 1.21150 1.19759 1.21401 0.94037 0.90273 1.51584 0.91713 1.19651 0.87560 0.90743 0.81267 1.86177 1.48008 1.65352 1.39209 1.23216 1.03189 0.89423 1.01621 1.22259 0.87705 0.97635 0.95158 1.48525 1.24713 1.04514 1.55839 1.19138 0.86174 0.81793 0.80377 1.90709 1.28237 1.79530 1.42897 1.23521 1.03103 0.95327 1.05442 1.87137 1.30433 0.97420 1.75325 1.24284 1.04620 0.95654 1.04500 1.22902 1.01106 0.91986 1.02494 1.23294 0.97145 1.02340 0.97507 1.22479 0.93428 0.84890 0.99253 0.92277 0.77329 0.89370 0.91154 0.92340 0.92770 0.87330 0.87547 0.86559 0.88014 0.87943 0.87634 0.88383 0.90815 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.52 10.86 55.43 0.60 -21.92 16 2 C 0.07 1.88 5.32 -17.82 -0.09 1.78 16 3 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.53 -13.72 8.26 -34.44 -0.28 -14.00 16 8 H 0.06 1.66 7.79 -52.49 -0.41 1.25 16 9 C 0.25 5.85 0.86 -89.50 -0.08 5.77 16 10 O -0.58 -14.40 13.15 -35.23 -0.46 -14.86 16 11 C -0.14 -2.80 5.34 -24.90 -0.13 -2.93 16 12 C 0.10 1.64 6.48 -3.07 -0.02 1.62 16 13 N -0.60 -11.74 3.32 -170.38 -0.57 -12.31 16 14 C 0.54 10.24 7.87 -10.99 -0.09 10.15 16 15 O -0.54 -12.04 16.12 5.56 0.09 -11.95 16 16 C -0.12 -1.75 5.62 36.01 0.20 -1.54 16 17 S -0.13 -1.90 21.09 -107.50 -2.27 -4.17 16 18 C -0.16 -1.65 6.36 -26.69 -0.17 -1.82 16 19 C -0.15 -1.23 10.29 -26.74 -0.28 -1.50 16 20 C -0.16 -1.40 10.30 -26.70 -0.28 -1.68 16 21 C 0.12 2.68 6.09 -2.41 -0.01 2.66 16 22 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 23 H 0.38 9.20 7.72 45.56 0.35 9.56 16 24 H 0.09 1.89 7.48 -51.93 -0.39 1.50 16 25 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.11 1.27 8.14 -51.92 -0.42 0.85 16 30 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.58 8.03 -51.93 -0.42 1.16 16 36 H 0.07 1.71 8.03 -51.93 -0.42 1.30 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -28.71 316.88 -8.72 -37.43 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.64 Total: 9.52 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.23 Total: -1.50 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.04 Total: -34.23 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.37 Total: -26.81 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -2.27 Total: -4.17 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.71 -8.72 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.661 kcal (2) G-P(sol) polarization free energy of solvation -28.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds