Wall clock time and date at job start Mon Mar 30 2020 01:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99822 * 2 1 4 4 H 1.48500 * 109.47460 * 265.00479 * 3 2 1 5 5 H 1.48500 * 109.47140 * 25.00551 * 3 2 1 6 6 H 1.48502 * 109.46990 * 145.00292 * 3 2 1 7 7 C 1.37879 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99492 * 185.06340 * 7 2 1 9 9 C 1.50699 * 119.99951 * 5.05750 * 7 2 1 10 10 O 1.42896 * 110.88923 * 60.78755 * 9 7 2 11 11 C 1.55155 * 111.00567 * 296.90076 * 9 7 2 12 12 C 1.54318 * 102.94406 * 206.42745 * 11 9 7 13 13 N 1.47022 * 107.27251 * 22.19562 * 12 11 9 14 14 C 1.34773 * 125.65005 * 181.02621 * 13 12 11 15 15 O 1.21280 * 120.00347 * 180.02562 * 14 13 12 16 16 C 1.50701 * 120.00010 * 0.02562 * 14 13 12 17 17 S 1.81395 * 109.47357 * 180.02562 * 16 14 13 18 18 C 1.81398 * 103.00279 * 180.02562 * 17 16 14 19 19 C 1.52998 * 117.49955 * 184.99833 * 18 17 16 20 20 C 1.52993 * 60.03477 * 252.47445 * 19 18 17 21 21 C 1.47426 * 108.70202 * 1.28550 * 13 12 11 22 22 H 0.97000 * 119.99773 * 359.97438 * 1 2 3 23 23 H 0.96704 * 114.00038 * 290.74208 * 10 9 7 24 24 H 1.09006 * 110.71388 * 88.06401 * 11 9 7 25 25 H 1.09005 * 110.87413 * 324.86650 * 11 9 7 26 26 H 1.09003 * 109.87879 * 262.77406 * 12 11 9 27 27 H 1.09000 * 109.88222 * 141.61568 * 12 11 9 28 28 H 1.08996 * 109.47333 * 60.00124 * 16 14 13 29 29 H 1.09000 * 109.46935 * 300.00383 * 16 14 13 30 30 H 1.09001 * 115.55028 * 330.67062 * 18 17 16 31 31 H 1.08996 * 117.49972 * 359.97438 * 19 18 17 32 32 H 1.08998 * 117.49898 * 144.97236 * 19 18 17 33 33 H 1.08999 * 117.50191 * 107.49986 * 20 19 18 34 34 H 1.09004 * 117.50329 * 252.52511 * 20 19 18 35 35 H 1.08999 * 110.36413 * 94.48236 * 21 13 12 36 36 H 1.08995 * 110.36627 * 216.80515 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6022 1.9855 -1.3947 5 1 1.3978 2.6808 0.5918 6 1 3.4899 1.4730 0.8030 7 6 2.0046 -1.1941 -0.0005 8 1 3.0814 -1.1959 0.0820 9 6 1.2554 -2.4966 -0.1162 10 8 0.5279 -2.5586 -1.3445 11 6 0.3139 -2.7064 1.0991 12 6 0.1936 -4.2427 1.1819 13 7 1.3660 -4.8098 0.4997 14 6 1.6215 -6.1231 0.3379 15 8 2.6246 -6.4786 -0.2438 16 6 0.6609 -7.1501 0.8797 17 16 1.2797 -8.8137 0.5056 18 6 0.0102 -9.8923 1.2236 19 6 0.2666 -11.4004 1.1961 20 6 -0.7824 -10.7865 0.2668 21 6 2.2189 -3.7039 0.0275 22 1 -0.4850 0.8401 0.0004 23 1 -0.2207 -1.9481 -1.3896 24 1 -0.6600 -2.2526 0.9151 25 1 0.7592 -2.3047 2.0093 26 1 -0.7193 -4.5703 0.6845 27 1 0.1832 -4.5580 2.2253 28 1 -0.3165 -7.0131 0.4171 29 1 0.5718 -7.0302 1.9594 30 1 -0.5174 -9.4872 2.0871 31 1 1.1978 -11.7445 0.7461 32 1 -0.0919 -11.9874 2.0416 33 1 -0.5413 -10.7266 -0.7945 34 1 -1.8311 -10.9691 0.5013 35 1 2.9972 -3.4862 0.7589 36 1 2.6621 -3.9519 -0.9369 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592852819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:58 Heat of formation + Delta-G solvation = -72.753914 kcal Electronic energy + Delta-G solvation = -18601.161621 eV Core-core repulsion = 15597.766820 eV Total energy + Delta-G solvation = -3003.394801 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.06865 -38.99046 -37.57499 -36.10692 -34.23420 -32.25683 -30.72489 -29.71824 -26.81811 -24.14899 -23.57169 -23.28802 -21.66702 -20.41107 -19.09352 -18.28276 -17.72378 -17.10511 -16.96328 -16.84578 -16.12634 -15.87635 -15.50796 -15.15234 -14.74228 -14.37152 -13.93300 -13.64793 -13.43010 -13.26782 -13.15649 -12.99514 -12.68015 -12.49655 -12.43916 -12.24706 -11.99294 -11.85258 -11.47077 -11.28762 -11.09698 -10.90731 -10.65620 -10.16140 -9.66016 -8.64644 -8.24001 -6.37366 0.41370 1.41994 1.45603 1.47634 1.52936 1.54265 2.02774 2.40385 2.76014 3.00403 3.41153 3.78073 3.82122 3.95222 3.98322 4.02531 4.05196 4.20088 4.32499 4.36523 4.57434 4.67347 4.74968 4.81374 4.86035 5.03472 5.13673 5.20964 5.22399 5.42731 5.54704 5.76986 6.10125 6.49946 6.65122 7.00248 7.31810 7.37914 8.81755 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.053643 B = 0.003659 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.843188 B = 7650.422612 C = 7859.826098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.040 3.960 3 Si 0.957 3.043 4 H -0.281 1.281 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.562 4.562 8 H 0.052 0.948 9 C 0.235 3.765 10 O -0.591 6.591 11 C -0.126 4.126 12 C 0.102 3.898 13 N -0.606 5.606 14 C 0.532 3.468 15 O -0.579 6.579 16 C -0.104 4.104 17 S -0.201 6.201 18 C -0.161 4.161 19 C -0.139 4.139 20 C -0.156 4.156 21 C 0.126 3.874 22 H 0.270 0.730 23 H 0.376 0.624 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 -15.226 6.543 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.162 4.162 3 Si 0.782 3.218 4 H -0.207 1.207 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.601 4.601 8 H 0.071 0.929 9 C 0.195 3.805 10 O -0.399 6.399 11 C -0.164 4.164 12 C -0.020 4.020 13 N -0.338 5.338 14 C 0.320 3.680 15 O -0.460 6.460 16 C -0.254 4.254 17 S 0.028 5.972 18 C -0.289 4.289 19 C -0.178 4.178 20 C -0.197 4.197 21 C 0.003 3.997 22 H 0.080 0.920 23 H 0.225 0.775 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.111 0.889 32 H 0.146 0.854 33 H 0.113 0.887 34 H 0.139 0.861 35 H 0.092 0.908 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.721 -16.076 5.585 17.662 hybrid contribution -0.837 2.120 0.512 2.336 sum -5.558 -13.957 6.098 16.213 Atomic orbital electron populations 1.69805 1.06488 1.28279 1.49525 1.25550 0.95853 1.01804 0.93028 0.85600 0.78778 0.79264 0.78111 1.20727 1.20257 1.19727 1.21631 0.93824 0.91907 1.52690 0.92934 1.19793 0.88386 0.90469 0.81901 1.86164 1.48077 1.65261 1.40368 1.22980 1.01611 0.92189 0.99646 1.22331 0.87380 0.94847 0.97446 1.48575 1.24904 1.04380 1.55975 1.19973 0.86404 0.82057 0.79523 1.90689 1.30375 1.80185 1.44724 1.23387 1.01905 0.93109 1.06994 1.87406 1.33797 0.99276 1.76702 1.24317 1.03883 0.95337 1.05408 1.23042 1.00766 0.90820 1.03136 1.23365 0.98368 1.01086 0.96833 1.22220 0.93682 0.85764 0.98057 0.92028 0.77483 0.90249 0.91802 0.90352 0.88876 0.85292 0.84526 0.84678 0.88925 0.85424 0.88719 0.86070 0.90830 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.12 10.86 21.45 0.23 -44.89 16 2 C 0.04 2.00 5.32 84.65 0.45 2.45 16 3 Si 0.96 40.93 29.54 68.60 2.03 42.95 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.56 -29.30 8.26 25.60 0.21 -29.09 16 8 H 0.05 2.78 7.79 -2.91 -0.02 2.76 16 9 C 0.23 11.16 0.86 -10.07 -0.01 11.15 16 10 O -0.59 -29.73 13.15 -148.98 -1.96 -31.69 16 11 C -0.13 -5.05 5.34 31.78 0.17 -4.88 16 12 C 0.10 3.23 6.48 86.73 0.56 3.79 16 13 N -0.61 -23.01 3.32 -811.36 -2.70 -25.70 16 14 C 0.53 19.77 7.87 87.66 0.69 20.46 16 15 O -0.58 -26.50 16.12 -3.03 -0.05 -26.55 16 16 C -0.10 -2.69 5.62 71.24 0.40 -2.29 16 17 S -0.20 -5.55 21.09 -56.49 -1.19 -6.74 16 18 C -0.16 -2.84 6.36 30.62 0.19 -2.64 16 19 C -0.14 -1.96 10.29 30.59 0.31 -1.64 16 20 C -0.16 -2.26 10.30 30.62 0.32 -1.94 16 21 C 0.13 5.67 6.09 86.93 0.53 6.20 16 22 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 23 H 0.38 18.56 7.72 -74.05 -0.57 17.99 16 24 H 0.08 3.32 7.48 -2.38 -0.02 3.31 16 25 H 0.06 2.62 8.04 -2.38 -0.02 2.60 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 3.25 8.03 -2.39 -0.02 3.23 16 36 H 0.04 2.22 8.03 -2.39 -0.02 2.20 16 Total: -1.00 -63.30 316.88 0.70 -62.61 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.51 Total: 28.46 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 3.83 Total: 1.56 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -2.46 Total: -70.59 kcal Atomic # 8 Polarization: -56.23 SS G_CDS: -2.01 Total: -58.24 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: -5.55 SS G_CDS: -1.19 Total: -6.74 kcal Total: -63.30 0.70 -62.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.149 kcal (2) G-P(sol) polarization free energy of solvation -63.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds