Wall clock time and date at job start Mon Mar 30 2020 01:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47380 * 2 1 4 4 C 1.35536 * 117.00349 * 180.02562 * 3 2 1 5 5 N 1.32754 * 120.46793 * 359.97438 * 4 3 2 6 6 C 1.32453 * 120.65739 * 179.72838 * 5 4 3 7 7 N 1.38452 * 119.17691 * 180.02562 * 6 5 4 8 8 C 1.46502 * 119.99864 * 359.97438 * 7 6 5 9 9 C 1.46496 * 120.00334 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47453 * 89.99598 * 9 7 6 11 11 H 1.08000 * 119.99660 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00239 * 180.02562 * 10 9 7 13 13 N 1.31513 * 119.99918 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00006 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47657 * 89.99752 * 14 12 10 16 16 H 1.48506 * 109.47268 * 209.99828 * 14 12 10 17 17 H 1.48500 * 109.47421 * 329.99536 * 14 12 10 18 18 N 1.32464 * 121.64966 * 0.02562 * 6 5 4 19 19 C 1.32460 * 120.89298 * 359.97438 * 18 6 5 20 20 C 1.38308 * 119.25250 * 359.97438 * 19 18 6 21 21 Cl 1.73605 * 120.75471 * 180.02562 * 20 19 18 22 22 H 1.08993 * 109.47358 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47227 * 300.00181 * 1 2 3 24 24 H 1.09006 * 109.46949 * 59.99932 * 1 2 3 25 25 H 1.09002 * 109.47078 * 240.00097 * 2 1 3 26 26 H 1.08998 * 109.47551 * 120.00054 * 2 1 3 27 27 H 1.08999 * 109.47184 * 90.00261 * 8 7 6 28 28 H 1.08999 * 109.47318 * 209.99941 * 8 7 6 29 29 H 1.09001 * 109.47118 * 330.00353 * 8 7 6 30 30 H 1.09004 * 109.47412 * 210.00089 * 9 7 6 31 31 H 1.09001 * 109.46811 * 329.99850 * 9 7 6 32 32 H 0.97000 * 119.99950 * 180.02562 * 13 12 10 33 33 H 1.07999 * 120.37119 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3500 1.5249 -0.0005 5 7 4.1673 0.4787 -0.0005 6 6 5.4810 0.6479 -0.0065 7 7 6.3048 -0.4648 -0.0068 8 6 5.7210 -1.8084 -0.0001 9 6 7.7603 -0.2986 -0.0127 10 6 8.2649 -0.2379 1.4060 11 1 7.5707 -0.3159 2.2297 12 6 9.6126 -0.0830 1.6524 13 7 10.4578 0.0114 0.6493 14 14 10.2380 -0.0085 3.4110 15 1 10.5632 -1.3798 3.8793 16 1 11.4581 0.8361 3.4671 17 1 9.1899 0.5773 4.2848 18 7 6.0263 1.8551 -0.0121 19 6 5.2703 2.9429 -0.0124 20 6 3.8937 2.8092 -0.0074 21 17 2.8660 4.2083 -0.0084 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 5.5717 -2.1448 -1.0260 28 1 6.3948 -2.4948 0.5128 29 1 4.7623 -1.7854 0.5180 30 1 8.2204 -1.1429 -0.5262 31 1 8.0183 0.6256 -0.5299 32 1 11.4060 0.1200 0.8227 33 1 5.7239 3.9230 -0.0166 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593459975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:53 Heat of formation + Delta-G solvation = -1.289489 kcal Electronic energy + Delta-G solvation = -18519.331346 eV Core-core repulsion = 15413.451425 eV Total energy + Delta-G solvation = -3105.879921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.16864 -39.80502 -37.85191 -37.18795 -34.83279 -34.23745 -32.73961 -31.20498 -29.76739 -27.33352 -25.51462 -25.30828 -23.46255 -22.70401 -19.64309 -19.00358 -18.63074 -17.53087 -17.33033 -16.97523 -16.56301 -16.08021 -15.60326 -14.97329 -14.91545 -14.84115 -14.05272 -13.69934 -13.42550 -13.35601 -13.13482 -13.05505 -12.78448 -12.64459 -12.54768 -12.23704 -12.14312 -12.02121 -11.99776 -11.74716 -11.27286 -10.60705 -10.31046 -10.13241 -8.75053 -8.14568 -6.31644 0.05571 0.20906 1.15415 1.39716 1.41476 1.51321 1.67375 2.00468 2.41199 2.80026 3.10617 3.14605 3.60804 3.80418 4.07286 4.12021 4.17444 4.41673 4.45384 4.64006 4.80224 4.87917 4.95481 4.97123 5.01968 5.21070 5.29490 5.64595 5.75276 5.96019 6.02769 6.11148 6.51226 6.75964 7.27652 7.39862 8.88128 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021735 B = 0.005224 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.912324 B = 5358.277363 C = 6074.453273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 O -0.295 6.295 4 C 0.408 3.592 5 N -0.621 5.621 6 C 0.589 3.411 7 N -0.571 5.571 8 C 0.105 3.895 9 C 0.273 3.727 10 C -0.535 4.535 11 H 0.045 0.955 12 C 0.018 3.982 13 N -0.923 5.923 14 Si 0.961 3.039 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.277 1.277 18 N -0.589 5.589 19 C 0.230 3.770 20 C -0.243 4.243 21 Cl -0.036 7.036 22 H 0.102 0.898 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.267 0.733 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.290 1.585 -1.790 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 O -0.199 6.199 4 C 0.217 3.783 5 N -0.363 5.363 6 C 0.234 3.766 7 N -0.282 5.282 8 C -0.037 4.037 9 C 0.152 3.848 10 C -0.574 4.574 11 H 0.063 0.937 12 C -0.182 4.182 13 N -0.563 5.563 14 Si 0.786 3.214 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.202 1.202 18 N -0.315 5.315 19 C 0.062 3.938 20 C -0.280 4.280 21 Cl -0.008 7.008 22 H 0.120 0.880 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -16.720 0.834 -1.846 16.843 hybrid contribution 0.167 0.631 0.783 1.019 sum -16.554 1.464 -1.063 16.652 Atomic orbital electron populations 1.21819 0.90230 1.04432 1.03539 1.22937 0.96728 0.79559 1.02548 1.86309 1.14703 1.32599 1.86257 1.19550 0.84887 0.87979 0.85846 1.67572 1.03983 1.33296 1.31442 1.19138 0.83928 0.86977 0.86566 1.46858 1.06318 1.02975 1.72075 1.21665 0.99141 0.81037 1.01901 1.18948 0.72697 0.96839 0.96300 1.21554 0.92558 1.50602 0.92689 0.93708 1.25659 0.96759 0.94523 1.01220 1.70021 1.03408 1.50313 1.32531 0.85517 0.77658 0.78394 0.79797 1.19464 1.20434 1.20192 1.68302 1.39996 0.98033 1.25211 1.23278 0.87071 0.98217 0.85196 1.21267 0.93288 0.87757 1.25651 1.98309 1.66759 1.38026 1.97731 0.87959 0.91471 0.91308 0.91557 0.91876 0.91963 0.90889 0.90410 0.95756 0.95626 0.92373 0.78140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.06 1.27 6.06 71.98 0.44 1.71 16 3 O -0.29 -8.43 9.68 -88.40 -0.86 -9.28 16 4 C 0.41 13.68 7.52 84.85 0.64 14.32 16 5 N -0.62 -23.00 8.05 -310.77 -2.50 -25.51 16 6 C 0.59 25.10 8.18 261.49 2.14 27.24 16 7 N -0.57 -25.06 2.96 -740.25 -2.19 -27.25 16 8 C 0.11 3.62 10.44 127.77 1.33 4.95 16 9 C 0.27 14.10 5.16 85.63 0.44 14.55 16 10 C -0.54 -29.72 9.39 25.60 0.24 -29.48 16 11 H 0.04 2.54 7.81 -2.91 -0.02 2.51 16 12 C 0.02 1.00 5.46 84.65 0.46 1.46 16 13 N -0.92 -53.45 13.29 21.45 0.28 -53.17 16 14 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 N -0.59 -25.36 9.11 -198.11 -1.80 -27.17 16 19 C 0.23 7.85 11.10 84.61 0.94 8.79 16 20 C -0.24 -7.75 6.38 22.58 0.14 -7.61 16 21 Cl -0.04 -0.95 28.63 -2.72 -0.08 -1.03 16 22 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 26 H 0.06 1.47 8.12 -2.39 -0.02 1.45 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 29 H 0.08 2.47 7.33 -2.39 -0.02 2.45 16 30 H 0.02 1.30 8.07 -2.38 -0.02 1.28 16 31 H 0.03 1.46 7.33 -2.39 -0.02 1.44 16 32 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.20 5.40 8.06 -2.91 -0.02 5.37 16 Total: -1.00 -64.03 306.33 3.51 -60.52 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 1.11 Total: 2.51 kcal Atomic # 6 Polarization: 27.02 SS G_CDS: 7.51 Total: 34.53 kcal Atomic # 7 Polarization: -126.87 SS G_CDS: -6.21 Total: -133.09 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.86 Total: -9.28 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -64.03 3.51 -60.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593459975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.234 kcal (2) G-P(sol) polarization free energy of solvation -64.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds