Wall clock time and date at job start Mon Mar 30 2020 01:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.47126 * 2 1 4 4 C 1.35529 * 117.00053 * 180.02562 * 3 2 1 5 5 N 1.32748 * 120.47047 * 359.97438 * 4 3 2 6 6 C 1.32459 * 120.65510 * 179.97438 * 5 4 3 7 7 N 1.38457 * 119.17173 * 180.02562 * 6 5 4 8 8 C 1.46503 * 119.99581 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47197 * 35.00075 * 8 7 6 10 10 C 1.52997 * 109.47171 * 274.99508 * 8 7 6 11 11 C 1.50709 * 109.46643 * 154.99626 * 8 7 6 12 12 H 1.07999 * 120.00252 * 35.00579 * 11 8 7 13 13 C 1.37880 * 119.99697 * 214.99990 * 11 8 7 14 14 N 1.31514 * 119.99804 * 184.92220 * 13 11 8 15 15 Si 1.86802 * 120.00029 * 4.91852 * 13 11 8 16 16 H 1.48491 * 109.47052 * 84.83523 * 15 13 11 17 17 H 1.48503 * 109.46638 * 204.83186 * 15 13 11 18 18 H 1.48501 * 109.46852 * 324.83194 * 15 13 11 19 19 N 1.32466 * 121.65120 * 0.02562 * 6 5 4 20 20 C 1.32456 * 120.89293 * 359.97438 * 19 6 5 21 21 C 1.38309 * 119.25501 * 359.97438 * 20 19 6 22 22 Cl 1.73598 * 120.75517 * 180.02562 * 21 20 19 23 23 H 1.08994 * 109.46763 * 60.00586 * 1 2 3 24 24 H 1.08995 * 109.46814 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47109 * 300.00550 * 1 2 3 26 26 H 1.08995 * 109.47390 * 239.99889 * 2 1 3 27 27 H 1.09007 * 109.47017 * 119.99327 * 2 1 3 28 28 H 0.97000 * 120.00183 * 0.02562 * 7 6 5 29 29 H 1.09002 * 109.47089 * 295.03542 * 10 8 7 30 30 H 1.08997 * 109.47163 * 55.03343 * 10 8 7 31 31 H 1.08996 * 109.47179 * 175.03963 * 10 8 7 32 32 H 0.97001 * 119.99859 * 180.02562 * 14 13 11 33 33 H 1.07999 * 120.36951 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3500 1.5249 -0.0005 5 7 4.1672 0.4788 -0.0005 6 6 5.4810 0.6481 -0.0016 7 7 6.3049 -0.4646 -0.0021 8 6 7.7604 -0.2982 -0.0026 9 1 8.0261 0.5793 0.5868 10 6 8.2523 -0.1153 -1.4398 11 6 8.4059 -1.5207 0.5975 12 1 7.9715 -2.4959 0.4344 13 6 9.5512 -1.3941 1.3547 14 7 10.1688 -2.4675 1.7974 15 14 10.2256 0.3021 1.7517 16 1 9.5383 0.8392 2.9534 17 1 11.6835 0.2053 2.0172 18 1 9.9913 1.2099 0.6001 19 7 6.0262 1.8554 -0.0021 20 6 5.2703 2.9430 -0.0022 21 6 3.8937 2.8094 -0.0022 22 17 2.8659 4.2084 -0.0029 23 1 -0.3632 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 5.9184 -1.3543 -0.0020 29 1 8.0655 -1.0275 -2.0066 30 1 7.7202 0.7155 -1.9030 31 1 9.3215 0.0961 -1.4338 32 1 10.9744 -2.3784 2.3304 33 1 5.7238 3.9232 -0.0023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593462087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:55 Heat of formation + Delta-G solvation = -13.496576 kcal Electronic energy + Delta-G solvation = -18408.488749 eV Core-core repulsion = 15302.079489 eV Total energy + Delta-G solvation = -3106.409260 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.20555 -39.83593 -37.84569 -37.26010 -34.74361 -34.34041 -32.98896 -31.77966 -30.06833 -27.32582 -25.82892 -24.62358 -23.60324 -22.14176 -20.12707 -19.47319 -18.70341 -17.57825 -17.30871 -16.96304 -16.86170 -15.92175 -15.56025 -15.17910 -14.90294 -14.55714 -14.37850 -14.03058 -13.50003 -13.44422 -13.06648 -12.99237 -12.78201 -12.69037 -12.44577 -12.18226 -12.06546 -12.04911 -11.82943 -11.42083 -11.21936 -10.84008 -10.45889 -10.25546 -8.88546 -8.37919 -6.46517 0.03046 0.14605 1.13788 1.35486 1.39026 1.49842 1.66670 2.07482 2.30300 2.73718 3.02233 3.11326 3.66037 3.80072 4.04791 4.09938 4.14909 4.43066 4.48457 4.71846 4.80324 4.84268 4.93449 4.95184 5.14330 5.20085 5.42137 5.48178 5.67909 5.87731 6.06585 6.20052 6.56978 6.66437 7.18800 7.32917 8.77231 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.005123 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.725841 B = 5464.028141 C = 6231.492397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 O -0.294 6.294 4 C 0.408 3.592 5 N -0.630 5.630 6 C 0.591 3.409 7 N -0.666 5.666 8 C 0.252 3.748 9 H 0.051 0.949 10 C -0.139 4.139 11 C -0.533 4.533 12 H 0.047 0.953 13 C 0.031 3.969 14 N -0.933 5.933 15 Si 0.933 3.067 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.239 1.239 19 N -0.595 5.595 20 C 0.236 3.764 21 C -0.242 4.242 22 Cl -0.035 7.035 23 H 0.069 0.931 24 H 0.100 0.900 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.410 0.590 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.271 0.729 33 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.872 11.307 -4.345 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 O -0.198 6.198 4 C 0.218 3.782 5 N -0.372 5.372 6 C 0.234 3.766 7 N -0.297 5.297 8 C 0.148 3.852 9 H 0.069 0.931 10 C -0.198 4.198 11 C -0.571 4.571 12 H 0.065 0.935 13 C -0.170 4.170 14 N -0.571 5.571 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.162 1.162 19 N -0.323 5.323 20 C 0.069 3.931 21 C -0.279 4.279 22 Cl -0.007 7.007 23 H 0.088 0.912 24 H 0.118 0.882 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.247 0.753 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -15.251 10.683 -4.250 19.099 hybrid contribution -0.144 0.274 0.433 0.533 sum -15.395 10.957 -3.816 19.278 Atomic orbital electron populations 1.21819 0.90182 1.04392 1.03642 1.22931 0.96799 0.79563 1.02505 1.86305 1.14938 1.32476 1.86092 1.19618 0.84841 0.88098 0.85625 1.67608 1.04396 1.33789 1.31402 1.19323 0.83913 0.87405 0.85964 1.45200 1.06137 1.04552 1.73853 1.18992 0.75281 0.96294 0.94610 0.93139 1.22106 1.00440 0.99877 0.97341 1.21197 1.10283 0.93196 1.32474 0.93488 1.25711 0.96578 1.00439 0.94244 1.70000 1.19661 1.30944 1.36474 0.85952 0.77536 0.80635 0.80219 1.19894 1.20690 1.16224 1.68231 1.39860 0.97718 1.26468 1.23345 0.86881 0.98326 0.84555 1.21295 0.93583 0.87606 1.25400 1.98322 1.66844 1.37798 1.97702 0.91171 0.88155 0.91341 0.91670 0.91970 0.75349 0.93504 0.93707 0.92688 0.91985 0.77241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.06 1.27 6.06 71.98 0.44 1.70 16 3 O -0.29 -8.03 9.68 -88.33 -0.85 -8.88 16 4 C 0.41 12.71 7.52 84.85 0.64 13.35 16 5 N -0.63 -21.99 9.40 -310.77 -2.92 -24.92 16 6 C 0.59 22.48 8.40 261.49 2.20 24.68 16 7 N -0.67 -27.29 5.22 -334.00 -1.74 -29.03 16 8 C 0.25 11.34 2.21 44.25 0.10 11.44 16 9 H 0.05 2.36 4.66 -2.39 -0.01 2.35 16 10 C -0.14 -5.63 9.48 71.98 0.68 -4.95 16 11 C -0.53 -28.52 9.05 25.60 0.23 -28.29 16 12 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 13 C 0.03 1.69 5.47 84.66 0.46 2.16 16 14 N -0.93 -55.18 13.96 21.45 0.30 -54.88 16 15 Si 0.93 42.33 26.99 68.60 1.85 44.18 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.24 -10.07 6.82 99.48 0.68 -9.39 16 19 N -0.59 -21.32 9.20 -198.10 -1.82 -23.15 16 20 C 0.24 6.62 11.10 84.62 0.94 7.56 16 21 C -0.24 -6.79 6.38 22.59 0.14 -6.65 16 22 Cl -0.03 -0.81 28.63 -2.72 -0.08 -0.88 16 23 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.50 8.12 -2.39 -0.02 1.48 16 27 H 0.06 1.48 8.12 -2.38 -0.02 1.46 16 28 H 0.41 16.28 8.71 -92.71 -0.81 15.47 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.21 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -61.78 302.93 1.61 -60.17 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.30 Total: 17.79 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 6.57 Total: 19.59 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -6.19 Total: -131.97 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.85 Total: -8.88 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.85 Total: 44.18 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.88 kcal Total: -61.78 1.61 -60.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593462087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.677 kcal (2) G-P(sol) polarization free energy of solvation -61.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds