Wall clock time and date at job start Mon Mar 30 2020 01:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47082 * 2 1 4 4 C 1.35536 * 116.99996 * 179.97438 * 3 2 1 5 5 N 1.32739 * 120.46905 * 0.23061 * 4 3 2 6 6 C 1.32455 * 120.65626 * 180.27890 * 5 4 3 7 7 N 1.38461 * 119.17920 * 179.75877 * 6 5 4 8 8 C 1.46499 * 120.00030 * 179.72522 * 7 6 5 9 9 H 1.09002 * 109.47391 * 325.00041 * 8 7 6 10 10 C 1.53000 * 109.46840 * 85.00371 * 8 7 6 11 11 C 1.50699 * 109.47060 * 205.00114 * 8 7 6 12 12 H 1.07999 * 120.00019 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00129 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99723 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99900 * 179.97438 * 13 11 8 16 16 H 1.48491 * 109.47312 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46948 * 119.99892 * 15 13 11 18 18 H 1.48500 * 109.46809 * 239.99811 * 15 13 11 19 19 N 1.32472 * 121.64572 * 359.47754 * 6 5 4 20 20 C 1.32447 * 120.89558 * 0.25944 * 19 6 5 21 21 C 1.38313 * 119.25551 * 0.02562 * 20 19 6 22 22 Cl 1.73592 * 120.76004 * 179.97438 * 21 20 19 23 23 H 1.09003 * 109.47185 * 60.00366 * 1 2 3 24 24 H 1.09008 * 109.47262 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47430 * 300.00018 * 1 2 3 26 26 H 1.08997 * 109.47326 * 239.99440 * 2 1 3 27 27 H 1.09003 * 109.47185 * 119.99634 * 2 1 3 28 28 H 0.97002 * 119.99560 * 359.73133 * 7 6 5 29 29 H 1.09004 * 109.46724 * 180.02562 * 10 8 7 30 30 H 1.09001 * 109.47194 * 299.99493 * 10 8 7 31 31 H 1.08992 * 109.47399 * 59.99666 * 10 8 7 32 32 H 0.97003 * 119.99231 * 179.97438 * 14 13 11 33 33 H 1.07997 * 120.37752 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3500 1.5249 0.0005 5 7 4.1672 0.4789 -0.0036 6 6 5.4809 0.6481 0.0025 7 7 6.3049 -0.4646 0.0030 8 6 7.7604 -0.2983 0.0036 9 1 8.0261 0.5792 -0.5859 10 6 8.2522 -0.1153 1.4408 11 6 8.4059 -1.5207 -0.5964 12 1 7.7933 -2.3394 -0.9438 13 6 9.7787 -1.5939 -0.7018 14 7 10.5248 -0.5967 -0.2792 15 14 10.5789 -3.1096 -1.4449 16 1 9.5276 -4.0814 -1.8391 17 1 11.3653 -2.7175 -2.6420 18 1 11.4799 -3.7348 -0.4436 19 7 6.0262 1.8554 0.0025 20 6 5.2703 2.9430 0.0015 21 6 3.8936 2.8094 0.0011 22 17 2.8658 4.2084 0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 5.9183 -1.3543 0.0030 29 1 9.3351 0.0089 1.4412 30 1 7.7853 0.7689 1.8748 31 1 7.9865 -0.9927 2.0303 32 1 11.4906 -0.6484 -0.3531 33 1 5.7237 3.9232 0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593462094.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:57 Heat of formation + Delta-G solvation = -11.462865 kcal Electronic energy + Delta-G solvation = -18313.747606 eV Core-core repulsion = 15207.426534 eV Total energy + Delta-G solvation = -3106.321072 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.18015 -39.80894 -37.79683 -37.23165 -34.79551 -34.29372 -32.78614 -31.43285 -29.81079 -27.31815 -25.80481 -24.63660 -23.58217 -22.33478 -19.90770 -19.48543 -18.24428 -17.56156 -17.30253 -16.95523 -16.80902 -15.92497 -15.55282 -15.13412 -14.89582 -14.41783 -14.19072 -13.69067 -13.43475 -13.28795 -12.98175 -12.82785 -12.75948 -12.65310 -12.29683 -12.18556 -12.17011 -12.03371 -11.98215 -11.42880 -11.04590 -10.65581 -10.38524 -10.20011 -8.85136 -8.17529 -6.33435 0.04821 0.17321 1.15129 1.44186 1.46071 1.56799 1.68590 2.12143 2.44629 2.76893 3.12704 3.15354 3.68797 3.82959 4.05653 4.11544 4.16159 4.44127 4.75674 4.79186 4.91069 4.94228 5.05454 5.12609 5.20032 5.44895 5.61441 5.69388 5.82917 6.01564 6.03249 6.22730 6.68102 6.74310 7.30746 7.43256 8.88394 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025857 B = 0.004502 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.619260 B = 6218.606072 C = 7033.061208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 O -0.294 6.294 4 C 0.408 3.592 5 N -0.629 5.629 6 C 0.591 3.409 7 N -0.667 5.667 8 C 0.286 3.714 9 H 0.025 0.975 10 C -0.131 4.131 11 C -0.552 4.552 12 H 0.064 0.936 13 C 0.023 3.977 14 N -0.910 5.910 15 Si 0.967 3.033 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.278 1.278 19 N -0.593 5.593 20 C 0.234 3.766 21 C -0.242 4.242 22 Cl -0.035 7.035 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.409 0.591 29 H 0.071 0.929 30 H 0.021 0.979 31 H 0.028 0.972 32 H 0.267 0.733 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.111 4.289 0.998 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 O -0.198 6.198 4 C 0.218 3.782 5 N -0.371 5.371 6 C 0.234 3.766 7 N -0.298 5.298 8 C 0.183 3.817 9 H 0.043 0.957 10 C -0.190 4.190 11 C -0.590 4.590 12 H 0.082 0.918 13 C -0.178 4.178 14 N -0.548 5.548 15 Si 0.793 3.207 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.204 1.204 19 N -0.321 5.321 20 C 0.066 3.934 21 C -0.279 4.279 22 Cl -0.007 7.007 23 H 0.087 0.913 24 H 0.119 0.881 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.246 0.754 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -15.453 3.797 1.008 15.945 hybrid contribution -0.007 -0.422 -0.291 0.512 sum -15.460 3.376 0.716 15.841 Atomic orbital electron populations 1.21822 0.90152 1.04414 1.03624 1.22936 0.96804 0.79573 1.02513 1.86307 1.14823 1.32510 1.86173 1.19584 0.84854 0.88045 0.85727 1.67597 1.04249 1.33703 1.31530 1.19310 0.83895 0.87435 0.85998 1.45067 1.06601 1.04351 1.73739 1.18502 0.72822 0.96661 0.93669 0.95696 1.21901 1.02684 0.97240 0.97177 1.21528 0.92427 1.03246 1.41794 0.91760 1.25639 0.97470 0.99306 0.95399 1.70023 1.05698 1.32478 1.46553 0.85366 0.78319 0.79095 0.77962 1.19093 1.20710 1.20364 1.68286 1.39906 0.97871 1.25989 1.23321 0.86975 0.98294 0.84783 1.21274 0.93432 0.87670 1.25521 1.98315 1.66780 1.37870 1.97715 0.91308 0.88072 0.91260 0.91847 0.91757 0.75396 0.91071 0.96023 0.95274 0.92415 0.77655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.06 1.28 6.06 71.98 0.44 1.72 16 3 O -0.29 -8.29 9.68 -88.40 -0.86 -9.14 16 4 C 0.41 13.30 7.52 84.86 0.64 13.94 16 5 N -0.63 -22.86 9.40 -310.77 -2.92 -25.78 16 6 C 0.59 23.99 8.40 261.48 2.20 26.18 16 7 N -0.67 -28.71 5.22 -334.01 -1.74 -30.45 16 8 C 0.29 14.24 2.55 44.25 0.11 14.35 16 9 H 0.03 1.41 7.50 -2.39 -0.02 1.39 16 10 C -0.13 -6.36 9.27 71.98 0.67 -5.69 16 11 C -0.55 -28.83 8.73 25.60 0.22 -28.61 16 12 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 13 C 0.02 1.19 5.30 84.65 0.45 1.64 16 14 N -0.91 -50.06 11.32 21.45 0.24 -49.81 16 15 Si 0.97 41.50 29.54 68.60 2.03 43.53 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 19 N -0.59 -23.53 9.20 -198.10 -1.82 -25.35 16 20 C 0.23 7.29 11.10 84.62 0.94 8.23 16 21 C -0.24 -7.29 6.38 22.59 0.14 -7.15 16 22 Cl -0.03 -0.86 28.63 -2.72 -0.08 -0.94 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 27 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 28 H 0.41 16.39 8.65 -92.71 -0.80 15.59 16 29 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 33 H 0.21 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -58.91 303.18 1.73 -57.17 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.33 Total: 17.58 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 6.55 Total: 23.19 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -6.24 Total: -131.39 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.86 Total: -9.14 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -58.91 1.73 -57.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593462094.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.709 kcal (2) G-P(sol) polarization free energy of solvation -58.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds