Wall clock time and date at job start Mon Mar 30 2020 01:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47522 * 2 1 4 4 C 1.35214 * 117.00328 * 179.97438 * 3 2 1 5 5 N 1.32046 * 119.95359 * 0.03089 * 4 3 2 6 6 C 1.34114 * 120.71219 * 180.02562 * 5 4 3 7 7 N 1.31539 * 119.71997 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00339 * 359.97438 * 7 6 5 9 9 C 1.52991 * 109.47290 * 119.99725 * 8 7 6 10 10 C 1.50706 * 109.46929 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00203 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99865 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99852 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99842 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47643 * 89.99464 * 14 12 10 16 16 H 1.48505 * 109.46935 * 209.99436 * 14 12 10 17 17 H 1.48497 * 109.47197 * 329.99147 * 14 12 10 18 18 N 1.37516 * 120.55899 * 359.94875 * 6 5 4 19 19 H 0.96996 * 120.06015 * 179.97438 * 18 6 5 20 20 C 1.36551 * 119.88177 * 0.03009 * 18 6 5 21 21 C 1.35345 * 119.31263 * 359.97438 * 20 18 6 22 22 Cl 1.73598 * 120.27943 * 179.72686 * 21 20 18 23 23 H 1.08997 * 109.47546 * 59.99622 * 1 2 3 24 24 H 1.09005 * 109.46980 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46622 * 299.99150 * 1 2 3 26 26 H 1.09010 * 109.47103 * 240.00441 * 2 1 3 27 27 H 1.09002 * 109.47528 * 120.00859 * 2 1 3 28 28 H 1.08996 * 109.46740 * 240.00420 * 8 7 6 29 29 H 1.08999 * 109.46942 * 359.97438 * 8 7 6 30 30 H 1.08996 * 109.47796 * 300.00049 * 9 8 7 31 31 H 1.08999 * 109.46893 * 60.00262 * 9 8 7 32 32 H 0.97007 * 119.99523 * 180.02562 * 13 12 10 33 33 H 1.07997 * 120.34653 * 180.02562 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3469 1.5244 0.0005 5 7 4.1504 0.4765 0.0004 6 6 5.4822 0.6346 0.0015 7 7 6.2644 -0.4229 0.0018 8 6 5.6801 -1.7663 0.0017 9 6 6.1384 -2.5217 -1.2473 10 6 5.5368 -3.9035 -1.2477 11 1 4.8916 -4.2118 -0.4383 12 6 5.8100 -4.7740 -2.2814 13 7 6.5952 -4.3984 -3.2673 14 14 5.0636 -6.4864 -2.2823 15 1 3.7551 -6.4559 -2.9838 16 1 5.9783 -7.4246 -2.9813 17 1 4.8643 -6.9402 -0.8825 18 7 6.0369 1.8929 0.0016 19 1 7.0010 1.9989 0.0028 20 6 5.2279 2.9930 0.0013 21 6 3.8846 2.8277 0.0004 22 17 2.8327 4.2087 0.0071 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5140 0.8899 28 1 6.0059 -2.3043 0.8918 29 1 4.5928 -1.6896 0.0017 30 1 5.8126 -1.9838 -2.1375 31 1 7.2257 -2.5985 -1.2469 32 1 6.7870 -5.0108 -3.9948 33 1 5.6555 3.9847 0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593466808.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:09 Heat of formation + Delta-G solvation = -7.091889 kcal Electronic energy + Delta-G solvation = -18171.365245 eV Core-core repulsion = 15065.233713 eV Total energy + Delta-G solvation = -3106.131532 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.16861 -39.90815 -37.67102 -36.73054 -35.15941 -34.78330 -32.75253 -32.10032 -30.17338 -26.82134 -25.98882 -24.07175 -23.64501 -22.09316 -19.74943 -19.51988 -19.09025 -18.49515 -17.60367 -16.55020 -16.43953 -16.02029 -15.82359 -15.30493 -14.90991 -14.87312 -14.24359 -14.04850 -13.62446 -13.45594 -13.26813 -12.90262 -12.64036 -12.59758 -12.33015 -12.19156 -12.14566 -11.85117 -11.47164 -11.38709 -11.12612 -10.62499 -10.45321 -10.22703 -8.63774 -8.21280 -6.35337 -0.27488 0.52240 0.96969 1.37742 1.41196 1.52701 1.70416 1.73107 2.39381 2.52683 3.09999 3.15542 3.46684 3.84854 4.02864 4.09909 4.21234 4.39972 4.44107 4.68628 4.81897 4.88333 4.93325 5.03356 5.10329 5.19850 5.42633 5.63684 5.74757 5.83568 5.98458 6.21173 6.78922 6.81799 7.12600 7.34218 8.90665 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.004592 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.807599 B = 6096.224287 C = 7081.300784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.059 3.941 3 O -0.292 6.292 4 C 0.435 3.565 5 N -0.626 5.626 6 C 0.518 3.482 7 N -0.620 5.620 8 C 0.099 3.901 9 C 0.049 3.951 10 C -0.543 4.543 11 H 0.061 0.939 12 C -0.001 4.001 13 N -0.935 5.935 14 Si 0.974 3.026 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.261 1.261 18 N -0.599 5.599 19 H 0.444 0.556 20 C 0.258 3.742 21 C -0.238 4.238 22 Cl -0.020 7.020 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.044 0.956 30 H -0.027 1.027 31 H -0.014 1.014 32 H 0.265 0.735 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.177 20.613 8.160 23.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.016 4.016 3 O -0.193 6.193 4 C 0.227 3.773 5 N -0.371 5.371 6 C 0.151 3.849 7 N -0.352 5.352 8 C -0.032 4.032 9 C 0.011 3.989 10 C -0.582 4.582 11 H 0.079 0.921 12 C -0.199 4.199 13 N -0.575 5.575 14 Si 0.797 3.203 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.185 1.185 18 N -0.219 5.219 19 H 0.286 0.714 20 C 0.120 3.880 21 C -0.277 4.277 22 Cl 0.008 6.992 23 H 0.090 0.910 24 H 0.112 0.888 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.063 0.937 30 H -0.008 1.008 31 H 0.004 0.996 32 H 0.073 0.927 33 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -8.700 19.518 8.017 22.823 hybrid contribution -0.230 -0.511 -0.374 0.674 sum -8.930 19.007 7.643 22.348 Atomic orbital electron populations 1.21808 0.89806 1.04254 1.03979 1.22875 0.97044 0.79538 1.02107 1.86173 1.16070 1.32172 1.84890 1.20580 0.85048 0.89378 0.82257 1.69428 1.03661 1.30763 1.33259 1.19852 0.84181 0.87173 0.93669 1.72652 1.33330 0.98902 1.30349 1.21466 0.97289 0.86740 0.97656 1.18808 0.94557 0.93820 0.91713 1.21584 1.29751 0.99202 1.07639 0.92062 1.26075 0.95432 1.03610 0.94734 1.70144 1.38004 1.37947 1.11419 0.85319 0.78252 0.77835 0.78848 1.19453 1.20351 1.18480 1.42387 1.12574 1.02512 1.64464 0.71364 1.22882 0.87923 0.93801 0.83406 1.19724 0.92176 0.87245 1.28595 1.98361 1.64838 1.38109 1.97907 0.91048 0.88781 0.90466 0.93013 0.91970 0.93126 0.93739 1.00831 0.99559 0.92660 0.73153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 10.28 71.98 0.74 -1.89 16 2 C 0.06 1.59 6.03 71.98 0.43 2.03 16 3 O -0.29 -8.06 9.62 -84.95 -0.82 -8.88 16 4 C 0.44 12.68 7.54 85.34 0.64 13.33 16 5 N -0.63 -22.92 7.60 -310.99 -2.36 -25.29 16 6 C 0.52 18.69 8.42 261.62 2.20 20.89 16 7 N -0.62 -27.88 10.67 -351.32 -3.75 -31.63 16 8 C 0.10 5.11 6.27 86.38 0.54 5.65 16 9 C 0.05 2.98 5.30 29.85 0.16 3.14 16 10 C -0.54 -33.81 9.11 25.60 0.23 -33.58 16 11 H 0.06 3.63 7.74 -2.91 -0.02 3.61 16 12 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 13 N -0.94 -60.48 13.29 21.45 0.28 -60.19 16 14 Si 0.97 46.33 29.54 68.60 2.03 48.36 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 18 N -0.60 -13.03 5.42 -197.61 -1.07 -14.10 16 19 H 0.44 7.24 8.93 -92.71 -0.83 6.41 16 20 C 0.26 3.59 11.06 83.29 0.92 4.51 16 21 C -0.24 -4.85 6.32 22.28 0.14 -4.71 16 22 Cl -0.02 -0.34 28.56 -2.72 -0.08 -0.41 16 23 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.05 1.64 8.11 -2.38 -0.02 1.62 16 27 H 0.06 1.78 8.11 -2.39 -0.02 1.76 16 28 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.04 2.29 6.65 -2.39 -0.02 2.28 16 30 H -0.03 -1.79 8.14 -2.39 -0.02 -1.81 16 31 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 32 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 33 H 0.25 0.20 8.06 -2.91 -0.02 0.18 16 Total: -1.00 -83.34 306.57 1.01 -82.33 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: 0.31 Total: 0.04 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 6.48 Total: 9.78 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -6.90 Total: -131.21 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.82 Total: -8.88 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.41 kcal Total: -83.34 1.01 -82.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593466808.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.238 kcal (2) G-P(sol) polarization free energy of solvation -83.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds