Wall clock time and date at job start Mon Mar 30 2020 00:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34953 * 126.03718 * 2 1 4 4 C 1.35312 * 107.74266 * 180.24977 * 3 2 1 5 5 C 1.39863 * 107.92527 * 359.64076 * 4 3 2 6 6 S 1.76203 * 125.90070 * 180.14442 * 5 4 3 7 7 O 1.42093 * 106.40396 * 23.77342 * 6 5 4 8 8 O 1.42102 * 106.40325 * 156.69348 * 6 5 4 9 9 N 1.65598 * 107.21752 * 270.23221 * 6 5 4 10 10 C 1.47069 * 136.05583 * 269.63256 * 9 6 5 11 11 C 1.53752 * 87.88880 * 152.96488 * 10 9 6 12 12 C 1.50692 * 114.27092 * 139.79300 * 11 10 9 13 13 H 1.08005 * 120.00176 * 266.47078 * 12 11 10 14 14 C 1.37876 * 120.00638 * 86.47000 * 12 11 10 15 15 N 1.31520 * 119.99676 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00549 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47087 * 60.00443 * 16 14 12 18 18 H 1.48498 * 109.47461 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47586 * 300.00438 * 16 14 12 20 20 C 1.47064 * 136.06077 * 90.00185 * 9 6 5 21 21 N 1.30837 * 108.19940 * 0.36269 * 5 4 3 22 22 H 1.09000 * 109.47401 * 90.00011 * 1 2 3 23 23 H 1.09001 * 109.46893 * 210.00586 * 1 2 3 24 24 H 1.08998 * 109.47086 * 329.99760 * 1 2 3 25 25 H 1.08002 * 126.12372 * 359.97438 * 3 2 1 26 26 H 1.08008 * 126.03698 * 179.76435 * 4 3 2 27 27 H 1.09007 * 113.46655 * 267.69725 * 10 9 6 28 28 H 1.08998 * 113.47317 * 38.12945 * 10 9 6 29 29 H 1.09011 * 114.39114 * 272.67247 * 11 10 9 30 30 H 0.96995 * 120.00365 * 179.97438 * 15 14 12 31 31 H 1.09004 * 113.46543 * 321.86457 * 20 9 6 32 32 H 1.08999 * 113.46972 * 92.24185 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0056 5 6 3.5347 -0.7321 -0.0008 6 16 4.9553 -1.7744 -0.0015 7 8 6.0184 -1.0042 0.5422 8 8 4.5399 -3.0194 0.5433 9 7 5.3496 -2.0646 -1.5835 10 6 5.0030 -3.0767 -2.5927 11 6 5.2800 -2.0151 -3.6698 12 6 5.9994 -2.5394 -4.8857 13 1 7.0764 -2.4810 -4.9430 14 6 5.2830 -3.0938 -5.9251 15 7 3.9715 -3.1646 -5.8557 16 14 6.1748 -3.7431 -7.4326 17 1 7.1115 -4.8218 -7.0272 18 1 5.1851 -4.2848 -8.3982 19 1 6.9368 -2.6396 -8.0705 20 6 6.2055 -1.4275 -2.5955 21 7 2.2892 -1.1327 -0.0005 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 1.9281 2.1194 -0.0004 26 1 4.4211 1.2963 -0.0107 27 1 5.6977 -3.9162 -2.6219 28 1 3.9608 -3.3928 -2.5504 29 1 4.4230 -1.3871 -3.9138 30 1 3.4674 -3.5542 -6.5870 31 1 6.1876 -0.3383 -2.5557 32 1 7.2174 -1.8314 -2.6249 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594826631.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:21 Heat of formation + Delta-G solvation = 20.818150 kcal Electronic energy + Delta-G solvation = -18728.100971 eV Core-core repulsion = 15625.223416 eV Total energy + Delta-G solvation = -3102.877555 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.31058 -39.92834 -38.37283 -37.07637 -34.56268 -34.46040 -31.39701 -30.11695 -28.09200 -26.61625 -26.39596 -23.33109 -22.37704 -21.55459 -19.70149 -19.01104 -18.49247 -18.16179 -17.12433 -16.94192 -16.61671 -16.43557 -15.70862 -14.95408 -14.78590 -14.55751 -14.49587 -13.83766 -13.50537 -13.48603 -13.38551 -13.28844 -13.26740 -13.09535 -12.73992 -12.72981 -12.35047 -12.15269 -12.02857 -11.04371 -10.96717 -10.85246 -10.49842 -9.92910 -9.86538 -8.11225 -6.21670 -0.83422 0.34990 1.20994 1.49307 1.51928 1.52625 1.59922 2.04190 2.49785 2.63219 2.97158 3.20520 3.59774 3.92535 4.15424 4.33957 4.38141 4.43629 4.53200 4.58595 4.62788 4.64182 4.82368 4.83701 5.04251 5.09556 5.15546 5.65348 5.86161 5.89168 5.92384 6.14604 6.31883 6.88373 7.47560 8.98599 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022439 B = 0.005659 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.500408 B = 4946.742386 C = 5631.195629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.355 5.355 3 C 0.066 3.934 4 C -0.219 4.219 5 C -0.502 4.502 6 S 2.760 3.240 7 O -0.962 6.962 8 O -0.984 6.984 9 N -1.044 6.044 10 C 0.135 3.865 11 C 0.023 3.977 12 C -0.525 4.525 13 H 0.073 0.927 14 C 0.017 3.983 15 N -0.924 5.924 16 Si 0.959 3.041 17 H -0.269 1.269 18 H -0.291 1.291 19 H -0.267 1.267 20 C 0.135 3.865 21 N -0.238 5.238 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.136 0.864 25 H 0.241 0.759 26 H 0.179 0.821 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.705 10.568 9.275 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.140 5.140 3 C -0.080 4.080 4 C -0.249 4.249 5 C -0.748 4.748 6 S 2.849 3.151 7 O -0.952 6.952 8 O -0.975 6.975 9 N -0.886 5.886 10 C 0.009 3.991 11 C 0.002 3.998 12 C -0.564 4.564 13 H 0.091 0.909 14 C -0.183 4.183 15 N -0.562 5.562 16 Si 0.785 3.215 17 H -0.194 1.194 18 H -0.217 1.217 19 H -0.192 1.192 20 C 0.011 3.989 21 N -0.066 5.066 22 H 0.110 0.890 23 H 0.111 0.889 24 H 0.155 0.845 25 H 0.257 0.743 26 H 0.197 0.803 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.456 9.264 10.200 15.216 hybrid contribution -0.025 0.373 -0.998 1.066 sum -6.480 9.637 9.202 14.817 Atomic orbital electron populations 1.22512 0.70847 1.07089 1.05484 1.49523 1.08979 1.03695 1.51846 1.23515 0.89779 0.95272 0.99443 1.21647 1.00183 0.90873 1.12211 1.34936 1.12366 1.11214 1.16315 0.99736 0.72401 0.72168 0.70785 1.93530 1.52035 1.73093 1.76564 1.93499 1.83933 1.43149 1.76891 1.59726 1.59793 1.41224 1.27855 1.22933 0.98560 0.92941 0.84632 1.20418 0.95009 0.93336 0.91073 1.21334 0.93938 1.39406 1.01677 0.90929 1.25820 0.95385 0.95870 1.01239 1.70083 1.07015 1.45496 1.33621 0.85596 0.78153 0.78919 0.78873 1.19443 1.21699 1.19205 1.22829 0.94804 0.98009 0.83301 1.77348 1.00303 1.10486 1.18453 0.88989 0.88945 0.84542 0.74297 0.80349 0.90406 0.93994 0.94119 0.92902 0.90053 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 11.47 127.77 1.47 2.55 16 2 N -0.35 -8.97 4.01 -369.56 -1.48 -10.45 16 3 C 0.07 1.37 11.49 83.54 0.96 2.33 16 4 C -0.22 -6.13 10.59 21.99 0.23 -5.90 16 5 C -0.50 -18.12 7.25 85.23 0.62 -17.50 16 6 S 2.76 108.99 6.43 -56.49 -0.36 108.62 16 7 O -0.96 -38.26 17.87 -128.00 -2.29 -40.55 16 8 O -0.98 -44.59 18.02 -128.00 -2.31 -46.90 16 9 N -1.04 -42.85 4.23 -549.52 -2.32 -45.17 16 10 C 0.13 6.20 8.31 83.26 0.69 6.89 16 11 C 0.02 1.09 3.79 -11.12 -0.04 1.04 16 12 C -0.52 -26.68 8.83 25.60 0.23 -26.45 16 13 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 14 C 0.02 0.87 5.46 84.65 0.46 1.33 16 15 N -0.92 -51.97 13.26 21.45 0.28 -51.69 16 16 Si 0.96 41.30 29.54 68.60 2.03 43.32 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 18 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 20 C 0.13 5.27 8.29 83.17 0.69 5.96 16 21 N -0.24 -8.68 12.58 -54.98 -0.69 -9.37 16 22 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.24 1.94 8.06 -2.91 -0.02 1.92 16 26 H 0.18 4.18 8.06 -2.91 -0.02 4.16 16 27 H 0.08 3.49 8.10 -2.38 -0.02 3.47 16 28 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 2.13 8.11 -2.38 -0.02 2.11 16 30 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.09 3.28 8.10 -2.39 -0.02 3.26 16 Total: -1.00 -74.51 300.00 -0.72 -75.22 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.13 Total: 6.70 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 5.30 Total: -29.74 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -4.21 Total: -116.68 kcal Atomic # 8 Polarization: -82.85 SS G_CDS: -4.59 Total: -87.44 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 108.99 SS G_CDS: -0.36 Total: 108.62 kcal Total: -74.51 -0.72 -75.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594826631.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.041 kcal (2) G-P(sol) polarization free energy of solvation -74.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds