Wall clock time and date at job start Mon Mar 30 2020 00:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34954 * 126.03713 * 2 1 4 4 C 1.35315 * 107.74451 * 180.02562 * 3 2 1 5 5 S 1.76200 * 126.03788 * 180.02562 * 4 3 2 6 6 O 1.42101 * 106.40157 * 203.54148 * 5 4 3 7 7 O 1.42106 * 106.40240 * 336.46185 * 5 4 3 8 8 N 1.65601 * 107.21997 * 89.99977 * 5 4 3 9 9 C 1.47065 * 136.05796 * 269.63102 * 8 5 4 10 10 C 1.53756 * 87.88326 * 152.96175 * 9 8 5 11 11 C 1.50705 * 114.26476 * 139.79352 * 10 9 8 12 12 H 1.08002 * 119.99960 * 266.47684 * 11 10 9 13 13 C 1.37881 * 120.00166 * 86.46845 * 11 10 9 14 14 N 1.31511 * 119.99749 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99933 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47291 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47380 * 120.00402 * 15 13 11 18 18 H 1.48506 * 109.47082 * 240.00326 * 15 13 11 19 19 C 1.47063 * 136.05220 * 89.99738 * 8 5 4 20 20 C 1.39867 * 107.92134 * 0.02562 * 4 3 2 21 21 N 1.30834 * 108.20347 * 359.97438 * 20 4 3 22 22 H 1.09000 * 109.46910 * 90.00017 * 1 2 3 23 23 H 1.08991 * 109.47300 * 209.99768 * 1 2 3 24 24 H 1.09005 * 109.47394 * 330.00411 * 1 2 3 25 25 H 1.08001 * 126.12517 * 359.75938 * 3 2 1 26 26 H 1.08997 * 113.46215 * 267.69399 * 9 8 5 27 27 H 1.08994 * 113.46766 * 38.13158 * 9 8 5 28 28 H 1.08997 * 114.39500 * 272.66686 * 10 9 8 29 29 H 0.97000 * 120.00031 * 179.97438 * 14 13 11 30 30 H 1.08997 * 113.47590 * 321.86791 * 19 8 5 31 31 H 1.09004 * 113.46238 * 92.31125 * 19 8 5 32 32 H 1.08000 * 125.89932 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 16 4.9751 1.6940 -0.0002 6 8 6.0297 0.9131 -0.5454 7 8 4.5723 2.9437 -0.5437 8 7 5.3738 1.9788 1.5817 9 6 5.0387 2.9936 2.5920 10 6 5.3053 1.9282 3.6680 11 6 6.0313 2.4439 4.8838 12 1 7.1076 2.3742 4.9400 13 6 5.3215 3.0049 5.9242 14 7 4.0109 3.0895 5.8559 15 14 6.2215 3.6448 7.4308 16 1 7.6818 3.4341 7.2618 17 1 5.9466 5.0951 7.5928 18 1 5.7516 2.9144 8.6355 19 6 6.2237 1.3317 2.5924 20 6 3.5346 -0.7321 -0.0015 21 7 2.2892 -1.1327 -0.0010 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5137 24 1 -0.3634 0.8900 0.5138 25 1 1.9281 2.1194 -0.0037 26 1 5.7422 3.8256 2.6213 27 1 3.9998 3.3206 2.5508 28 1 4.4421 1.3091 3.9122 29 1 3.5115 3.4838 6.5880 30 1 6.1944 0.2429 2.5518 31 1 7.2396 1.7258 2.6219 32 1 4.4054 -1.3710 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594827406.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:23 Heat of formation + Delta-G solvation = 43.415408 kcal Electronic energy + Delta-G solvation = -18742.562358 eV Core-core repulsion = 15640.664693 eV Total energy + Delta-G solvation = -3101.897665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.23765 -38.16779 -36.67376 -35.35354 -33.47244 -32.60317 -30.44420 -28.25958 -27.11281 -24.90352 -24.48643 -21.89663 -21.30309 -19.79899 -18.40628 -17.68432 -16.84686 -16.38028 -15.61833 -15.56562 -15.27083 -14.59931 -14.48851 -13.93650 -13.27345 -13.04995 -12.98189 -12.85830 -12.71374 -11.74046 -11.66461 -11.58711 -11.50540 -11.44416 -11.34681 -10.98519 -10.60810 -10.49962 -10.26289 -9.63083 -9.30401 -9.12741 -9.01996 -8.56989 -8.15712 -6.14965 -4.18878 0.89185 1.58875 2.32262 2.37689 3.25073 3.34096 3.37777 3.66344 4.22556 4.34453 4.36381 4.56869 4.76919 4.88483 5.01203 5.15671 5.17180 5.47225 5.53189 5.89170 6.21081 6.33604 6.37197 6.45745 6.56370 6.70829 6.78001 6.87694 7.39867 7.55099 7.67835 7.83984 8.25106 8.85219 9.47055 10.94859 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022434 B = 0.005661 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.778824 B = 4944.741930 C = 5622.605376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.367 5.367 3 C 0.179 3.821 4 C -0.808 4.808 5 S 2.744 3.256 6 O -0.970 6.970 7 O -0.973 6.973 8 N -1.049 6.049 9 C 0.132 3.868 10 C 0.033 3.967 11 C -0.514 4.514 12 H 0.064 0.936 13 C 0.067 3.933 14 N -0.888 5.888 15 Si 0.894 3.106 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.127 3.873 20 C 0.135 3.865 21 N -0.299 5.299 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.191 0.809 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.262 0.738 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 -3.994 -9.268 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.145 5.145 3 C 0.026 3.974 4 C -0.905 4.905 5 S 2.835 3.165 6 O -0.961 6.961 7 O -0.964 6.964 8 N -0.890 5.890 9 C 0.008 3.992 10 C 0.012 3.988 11 C -0.553 4.553 12 H 0.083 0.917 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.722 3.278 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.002 3.998 20 C -0.054 4.054 21 N -0.118 5.118 22 H 0.097 0.903 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.208 0.792 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.895 -4.727 -10.179 13.172 hybrid contribution 0.158 0.732 1.062 1.299 sum -6.737 -3.995 -9.117 12.020 Atomic orbital electron populations 1.22024 0.73737 1.05271 1.03751 1.49044 1.07245 1.04055 1.54144 1.22467 0.89298 0.94106 0.91559 1.31904 1.16987 1.09159 1.32473 1.00061 0.72704 0.72628 0.71139 1.93507 1.53419 1.72460 1.76702 1.93512 1.84259 1.41826 1.76786 1.59873 1.60434 1.40945 1.27796 1.23052 0.99102 0.92697 0.84389 1.20526 0.95042 0.92732 0.90510 1.21052 0.93539 1.39672 1.01014 0.91744 1.25029 0.94806 0.95475 0.98316 1.69959 1.05756 1.44231 1.32589 0.86505 0.80124 0.78541 0.82642 1.19537 1.20978 1.21025 1.22793 0.95091 0.96318 0.85549 1.23503 0.95626 0.92297 0.94011 1.77368 1.01754 1.07620 1.25068 0.90266 0.88781 0.88781 0.79191 0.90933 0.92645 0.91553 0.92841 0.92665 0.90823 0.78663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 11.47 59.85 0.69 1.43 16 2 N -0.37 -4.86 4.01 -68.16 -0.27 -5.13 16 3 C 0.18 2.49 11.23 -17.22 -0.19 2.30 16 4 C -0.81 -12.89 6.17 -40.01 -0.25 -13.13 16 5 S 2.74 49.10 6.42 -107.50 -0.69 48.41 16 6 O -0.97 -18.99 17.87 -57.17 -1.02 -20.01 16 7 O -0.97 -19.08 17.85 -57.17 -1.02 -20.10 16 8 N -1.05 -20.16 4.23 -125.03 -0.53 -20.69 16 9 C 0.13 2.80 8.31 -8.37 -0.07 2.73 16 10 C 0.03 0.75 3.79 -91.12 -0.35 0.41 16 11 C -0.51 -12.90 8.83 -34.44 -0.30 -13.21 16 12 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 13 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -23.98 13.26 55.43 0.74 -23.24 16 15 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.13 2.49 8.29 -8.50 -0.07 2.42 16 20 C 0.14 2.08 11.81 -17.37 -0.21 1.88 16 21 N -0.30 -4.61 12.58 30.62 0.39 -4.23 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.19 2.08 8.06 -52.49 -0.42 1.66 16 26 H 0.07 1.53 8.10 -51.93 -0.42 1.11 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 1.64 8.11 -51.93 -0.42 1.22 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 32 H 0.20 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 299.70 15.07 4.52 4.52 Total: -1.00 -32.64 299.70 -7.53 -40.17 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -3.77 Total: -1.10 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -0.85 Total: -13.55 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.32 Total: -53.29 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -2.04 Total: -40.11 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 49.10 SS G_CDS: -0.69 Total: 48.41 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.64 -7.53 -40.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594827406.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.587 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds