Wall clock time and date at job start Mon Mar 30 2020 00:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34954 * 126.03713 * 2 1 4 4 C 1.35315 * 107.74451 * 180.02562 * 3 2 1 5 5 S 1.76200 * 126.03788 * 180.02562 * 4 3 2 6 6 O 1.42101 * 106.40157 * 203.54148 * 5 4 3 7 7 O 1.42106 * 106.40240 * 336.46185 * 5 4 3 8 8 N 1.65601 * 107.21997 * 89.99977 * 5 4 3 9 9 C 1.47065 * 136.05796 * 269.63102 * 8 5 4 10 10 C 1.53756 * 87.88326 * 152.96175 * 9 8 5 11 11 C 1.50705 * 114.26476 * 139.79352 * 10 9 8 12 12 H 1.08002 * 119.99960 * 266.47684 * 11 10 9 13 13 C 1.37881 * 120.00166 * 86.46845 * 11 10 9 14 14 N 1.31511 * 119.99749 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99933 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47291 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47380 * 120.00402 * 15 13 11 18 18 H 1.48506 * 109.47082 * 240.00326 * 15 13 11 19 19 C 1.47063 * 136.05220 * 89.99738 * 8 5 4 20 20 C 1.39867 * 107.92134 * 0.02562 * 4 3 2 21 21 N 1.30834 * 108.20347 * 359.97438 * 20 4 3 22 22 H 1.09000 * 109.46910 * 90.00017 * 1 2 3 23 23 H 1.08991 * 109.47300 * 209.99768 * 1 2 3 24 24 H 1.09005 * 109.47394 * 330.00411 * 1 2 3 25 25 H 1.08001 * 126.12517 * 359.75938 * 3 2 1 26 26 H 1.08997 * 113.46215 * 267.69399 * 9 8 5 27 27 H 1.08994 * 113.46766 * 38.13158 * 9 8 5 28 28 H 1.08997 * 114.39500 * 272.66686 * 10 9 8 29 29 H 0.97000 * 120.00031 * 179.97438 * 14 13 11 30 30 H 1.08997 * 113.47590 * 321.86791 * 19 8 5 31 31 H 1.09004 * 113.46238 * 92.31125 * 19 8 5 32 32 H 1.08000 * 125.89932 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 16 4.9751 1.6940 -0.0002 6 8 6.0297 0.9131 -0.5454 7 8 4.5723 2.9437 -0.5437 8 7 5.3738 1.9788 1.5817 9 6 5.0387 2.9936 2.5920 10 6 5.3053 1.9282 3.6680 11 6 6.0313 2.4439 4.8838 12 1 7.1076 2.3742 4.9400 13 6 5.3215 3.0049 5.9242 14 7 4.0109 3.0895 5.8559 15 14 6.2215 3.6448 7.4308 16 1 7.6818 3.4341 7.2618 17 1 5.9466 5.0951 7.5928 18 1 5.7516 2.9144 8.6355 19 6 6.2237 1.3317 2.5924 20 6 3.5346 -0.7321 -0.0015 21 7 2.2892 -1.1327 -0.0010 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5137 24 1 -0.3634 0.8900 0.5138 25 1 1.9281 2.1194 -0.0037 26 1 5.7422 3.8256 2.6213 27 1 3.9998 3.3206 2.5508 28 1 4.4421 1.3091 3.9122 29 1 3.5115 3.4838 6.5880 30 1 6.1944 0.2429 2.5518 31 1 7.2396 1.7258 2.6219 32 1 4.4054 -1.3710 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594827406.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:23 Heat of formation + Delta-G solvation = 19.241280 kcal Electronic energy + Delta-G solvation = -18743.610627 eV Core-core repulsion = 15640.664693 eV Total energy + Delta-G solvation = -3102.945934 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.32499 -39.82539 -38.17712 -36.86271 -34.52926 -34.41447 -31.57452 -30.01271 -27.97701 -26.53460 -26.32040 -23.07423 -22.35077 -21.49690 -19.73620 -19.11213 -18.45888 -18.04135 -16.83842 -16.72293 -16.57847 -16.38052 -15.64974 -15.50747 -14.62740 -14.46910 -14.19826 -13.77193 -13.72201 -13.44406 -13.23068 -13.19555 -13.10551 -13.03386 -12.76706 -12.71446 -12.25902 -12.11080 -11.77701 -10.95463 -10.91147 -10.70575 -10.47812 -10.29306 -9.76166 -8.10048 -6.18686 -0.52767 0.49600 1.16231 1.43200 1.48776 1.52847 1.62869 2.22395 2.50992 2.89341 3.07975 3.22908 3.58779 3.68909 4.08347 4.25183 4.31912 4.35402 4.49771 4.52057 4.61942 4.71030 4.88465 4.93363 5.11731 5.21129 5.26077 5.69945 5.75943 5.91781 5.98219 6.29170 6.36272 6.90953 7.49965 8.99989 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022434 B = 0.005661 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.778824 B = 4944.741930 C = 5622.605376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.362 5.362 3 C 0.179 3.821 4 C -0.827 4.827 5 S 2.764 3.236 6 O -0.987 6.987 7 O -0.991 6.991 8 N -1.049 6.049 9 C 0.137 3.863 10 C 0.020 3.980 11 C -0.524 4.524 12 H 0.067 0.933 13 C 0.019 3.981 14 N -0.920 5.920 15 Si 0.954 3.046 16 H -0.264 1.264 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.133 3.867 20 C 0.125 3.875 21 N -0.319 5.319 22 H 0.102 0.898 23 H 0.099 0.901 24 H 0.119 0.881 25 H 0.219 0.781 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.262 0.738 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.485 -4.025 -9.560 12.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.139 5.139 3 C 0.024 3.976 4 C -0.928 4.928 5 S 2.858 3.142 6 O -0.978 6.978 7 O -0.982 6.982 8 N -0.889 5.889 9 C 0.012 3.988 10 C -0.001 4.001 11 C -0.563 4.563 12 H 0.085 0.915 13 C -0.181 4.181 14 N -0.559 5.559 15 Si 0.780 3.220 16 H -0.188 1.188 17 H -0.210 1.210 18 H -0.211 1.211 19 C 0.008 3.992 20 C -0.064 4.064 21 N -0.139 5.139 22 H 0.120 0.880 23 H 0.118 0.882 24 H 0.137 0.863 25 H 0.235 0.765 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.283 -4.760 -10.471 13.614 hybrid contribution 0.174 0.685 1.087 1.296 sum -7.110 -4.075 -9.384 12.459 Atomic orbital electron populations 1.22504 0.70778 1.06867 1.05775 1.49442 1.08885 1.03194 1.52405 1.22939 0.88881 0.95501 0.90244 1.31548 1.16901 1.09165 1.35151 0.99217 0.72674 0.72142 0.70154 1.93480 1.54895 1.72668 1.76769 1.93483 1.84580 1.43177 1.76931 1.59805 1.60673 1.40444 1.27969 1.22811 0.98994 0.92497 0.84532 1.20432 0.95040 0.93630 0.91029 1.21399 0.93853 1.39070 1.01933 0.91491 1.25733 0.95435 0.95950 1.00955 1.70060 1.06989 1.45470 1.33418 0.85564 0.79316 0.77709 0.79372 1.18771 1.20965 1.21112 1.22719 0.94820 0.97504 0.84155 1.23826 0.96318 0.92352 0.93902 1.77314 1.01989 1.09004 1.25565 0.87998 0.88213 0.86256 0.76478 0.91064 0.92814 0.93948 0.92922 0.90768 0.90019 0.77283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 11.47 127.77 1.47 2.51 16 2 N -0.36 -8.81 4.01 -369.57 -1.48 -10.29 16 3 C 0.18 4.66 11.23 83.54 0.94 5.60 16 4 C -0.83 -25.39 6.17 21.99 0.14 -25.26 16 5 S 2.76 96.47 6.42 -56.49 -0.36 96.10 16 6 O -0.99 -37.75 17.87 -128.00 -2.29 -40.04 16 7 O -0.99 -37.89 17.85 -128.00 -2.28 -40.17 16 8 N -1.05 -39.57 4.23 -549.47 -2.32 -41.89 16 9 C 0.14 5.78 8.31 83.27 0.69 6.47 16 10 C 0.02 0.90 3.79 -11.12 -0.04 0.86 16 11 C -0.52 -26.21 8.83 25.60 0.23 -25.98 16 12 H 0.07 3.24 7.81 -2.91 -0.02 3.21 16 13 C 0.02 0.97 5.46 84.66 0.46 1.43 16 14 N -0.92 -50.04 13.26 21.45 0.28 -49.76 16 15 Si 0.95 40.79 29.54 68.60 2.03 42.81 16 16 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 C 0.13 5.08 8.29 83.18 0.69 5.77 16 20 C 0.13 3.72 11.81 85.24 1.01 4.73 16 21 N -0.32 -9.41 12.58 -57.03 -0.72 -10.13 16 22 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.22 4.21 8.06 -2.91 -0.02 4.19 16 26 H 0.07 2.99 8.10 -2.39 -0.02 2.97 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.04 2.13 8.11 -2.39 -0.02 2.11 16 29 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 30 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.08 2.99 8.10 -2.38 -0.02 2.97 16 32 H 0.21 5.26 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -68.40 299.70 -0.45 -68.84 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.13 Total: 8.38 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 5.57 Total: -23.86 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -4.24 Total: -112.07 kcal Atomic # 8 Polarization: -75.64 SS G_CDS: -4.57 Total: -80.21 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 96.47 SS G_CDS: -0.36 Total: 96.10 kcal Total: -68.40 -0.45 -68.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594827406.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.085 kcal (2) G-P(sol) polarization free energy of solvation -68.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds