Wall clock time and date at job start Mon Mar 30 2020 01:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46828 * 2 1 4 4 C 1.46501 * 119.99893 * 265.68865 * 3 2 1 5 5 C 1.50696 * 109.47488 * 270.00404 * 4 3 2 6 6 H 1.08006 * 119.99951 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00117 * 180.02562 * 5 4 3 8 8 N 1.31505 * 120.00012 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99663 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46996 * 90.00325 * 9 7 5 11 11 H 1.48501 * 109.46632 * 209.99987 * 9 7 5 12 12 H 1.48492 * 109.47378 * 329.99842 * 9 7 5 13 13 C 1.34775 * 120.00094 * 85.69658 * 3 2 1 14 14 O 1.21646 * 120.00060 * 185.29245 * 13 3 2 15 15 C 1.47033 * 119.99850 * 5.28442 * 13 3 2 16 16 C 1.38539 * 126.90866 * 259.82774 * 15 13 3 17 17 Cl 1.73604 * 127.33574 * 359.97438 * 16 15 13 18 18 C 1.39801 * 105.32677 * 180.24327 * 16 15 13 19 19 N 1.30840 * 107.87731 * 359.60160 * 18 16 15 20 20 N 1.28435 * 110.97930 * 0.42157 * 19 18 16 21 21 C 1.46502 * 125.18685 * 179.77100 * 20 19 18 22 22 H 1.08997 * 109.46772 * 184.99185 * 1 2 3 23 23 H 1.08998 * 109.47134 * 304.99526 * 1 2 3 24 24 H 1.08994 * 109.47034 * 64.99657 * 1 2 3 25 25 H 1.09001 * 109.47050 * 240.00012 * 2 1 3 26 26 H 1.08997 * 109.47334 * 120.00376 * 2 1 3 27 27 H 1.09001 * 109.46953 * 30.00647 * 4 3 2 28 28 H 1.09004 * 109.46779 * 150.00349 * 4 3 2 29 29 H 0.96998 * 120.00238 * 180.02562 * 8 7 5 30 30 H 1.08001 * 126.06167 * 179.76552 * 18 16 15 31 31 H 1.09003 * 109.46676 * 274.90753 * 21 20 19 32 32 H 1.08990 * 109.47042 * 34.90404 * 21 20 19 33 33 H 1.08997 * 109.46883 * 154.90584 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3524 2.0401 -1.2652 5 6 3.8026 1.7937 -1.5923 6 1 4.4145 1.2056 -0.9243 7 6 4.3487 2.3200 -2.7437 8 7 3.6038 3.0366 -3.5568 9 14 6.1466 2.0152 -3.1487 10 1 6.2689 0.7739 -3.9546 11 1 6.6808 3.1635 -3.9243 12 1 6.9194 1.8661 -1.8895 13 6 2.1603 2.0458 1.1639 14 8 2.4729 3.2214 1.1588 15 6 1.9372 1.3499 2.4397 16 6 0.7987 1.4010 3.2273 17 17 -0.6565 2.2957 2.9177 18 6 1.0735 0.5837 4.3277 19 7 2.2774 0.0948 4.1742 20 7 2.8121 0.5221 3.0874 21 6 4.1541 0.1749 2.6135 22 1 -0.3633 -1.0238 0.0894 23 1 -0.3633 0.5894 0.8418 24 1 -0.3633 0.4343 -0.9313 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.7267 1.6364 -2.0612 28 1 2.1775 3.1121 -1.1738 29 1 3.9878 3.4066 -4.3670 30 1 0.4088 0.3881 5.1562 31 1 4.8850 0.8407 3.0724 32 1 4.3802 -0.8559 2.8860 33 1 4.1955 0.2816 1.5295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596891027.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:27 Heat of formation + Delta-G solvation = 39.826866 kcal Electronic energy + Delta-G solvation = -19238.052954 eV Core-core repulsion = 16133.955972 eV Total energy + Delta-G solvation = -3104.096982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.51598 -38.90748 -36.45248 -35.45297 -33.30640 -32.91818 -30.72335 -30.18786 -27.37547 -26.95902 -23.87575 -23.10694 -21.81069 -21.26094 -18.95876 -17.37332 -16.59223 -16.45873 -15.72489 -15.44391 -14.81856 -14.48204 -14.12965 -13.94199 -13.48011 -13.08810 -12.92619 -12.69895 -12.41951 -12.12212 -11.91679 -11.61031 -11.51866 -11.30608 -11.00368 -10.80170 -10.62464 -10.41126 -10.25824 -9.79038 -9.45008 -9.14807 -8.63629 -8.53334 -7.86893 -6.15168 -4.21623 1.64155 1.92378 2.50945 2.65010 3.20423 3.22275 3.29859 3.31594 3.68550 4.33516 4.56099 4.69121 5.07210 5.11520 5.19491 5.27436 5.38131 5.42087 5.49094 5.60780 5.74605 6.01608 6.17516 6.21185 6.48233 6.62624 6.92247 7.30056 7.36037 7.79080 7.96259 8.08421 8.15507 8.66191 8.84603 9.43755 10.92914 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.006293 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.945919 B = 4448.632367 C = 4935.497808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 N -0.580 5.580 4 C 0.245 3.755 5 C -0.533 4.533 6 H 0.056 0.944 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.577 3.423 14 O -0.514 6.514 15 C 0.016 3.984 16 C -0.128 4.128 17 Cl -0.025 7.025 18 C 0.021 3.979 19 N -0.282 5.282 20 N -0.268 5.268 21 C 0.084 3.916 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.038 0.962 28 H 0.048 0.952 29 H 0.265 0.735 30 H 0.191 0.809 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.951 -8.289 11.315 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.016 4.016 3 N -0.312 5.312 4 C 0.127 3.873 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.359 3.641 14 O -0.388 6.388 15 C -0.115 4.115 16 C -0.165 4.165 17 Cl 0.004 6.996 18 C -0.158 4.158 19 N -0.112 5.112 20 N -0.056 5.056 21 C -0.056 4.056 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.208 0.792 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.930 -8.205 11.499 14.663 hybrid contribution 0.253 0.388 -0.658 0.805 sum -3.677 -7.817 10.841 13.862 Atomic orbital electron populations 1.22255 0.96118 1.01701 1.02956 1.21438 0.94231 0.83619 1.02331 1.48282 1.62058 1.13275 1.07565 1.19416 0.95843 0.94502 0.77562 1.21353 0.95317 1.33753 1.06766 0.92528 1.24924 0.98213 0.94733 0.96006 1.69920 1.36179 1.34044 1.12664 0.86495 0.84614 0.77859 0.78439 1.20541 1.20974 1.19899 1.16858 0.79264 0.86225 0.81772 1.90843 1.46711 1.14920 1.86334 1.21751 0.91673 0.99702 0.98361 1.21141 0.90807 1.05779 0.98805 1.98336 1.32360 1.73462 1.95468 1.23413 0.93822 0.99032 0.99504 1.73177 1.10455 1.22571 1.05022 1.45498 1.13694 1.31843 1.14536 1.22337 0.77585 1.03402 1.02252 0.92129 0.92242 0.91921 0.89346 0.92573 0.94412 0.93398 0.92510 0.79184 0.89246 0.88183 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.21 37.16 0.38 -2.11 16 2 C 0.11 1.76 5.95 -4.04 -0.02 1.74 16 3 N -0.58 -11.99 2.46 -176.47 -0.43 -12.43 16 4 C 0.25 6.14 5.18 -5.19 -0.03 6.11 16 5 C -0.53 -14.21 9.39 -34.44 -0.32 -14.54 16 6 H 0.06 1.46 7.81 -52.48 -0.41 1.05 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 9 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 13 C 0.58 12.24 6.74 -12.70 -0.09 12.15 16 14 O -0.51 -13.10 16.66 5.24 0.09 -13.01 16 15 C 0.02 0.29 4.95 -82.00 -0.41 -0.12 16 16 C -0.13 -2.01 6.43 -38.89 -0.25 -2.26 16 17 Cl -0.02 -0.37 28.21 -51.86 -1.46 -1.83 16 18 C 0.02 0.28 12.04 -17.39 -0.21 0.07 16 19 N -0.28 -4.10 11.89 30.61 0.36 -3.74 16 20 N -0.27 -4.11 3.51 -63.85 -0.22 -4.33 16 21 C 0.08 1.04 11.22 59.85 0.67 1.72 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 26 H 0.06 0.84 6.76 -51.93 -0.35 0.49 16 27 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 28 H 0.05 1.37 7.35 -51.93 -0.38 0.98 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 1.44 7.66 -51.93 -0.40 1.04 16 LS Contribution 305.65 15.07 4.61 4.61 Total: -1.00 -31.69 305.65 -5.69 -37.38 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -3.97 Total: -2.06 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.37 Total: 4.41 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.44 Total: -45.27 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.46 Total: -1.83 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.69 -5.69 -37.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596891027.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.209 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds