Wall clock time and date at job start Mon Mar 30 2020 01:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46828 * 2 1 4 4 C 1.46501 * 119.99893 * 265.68865 * 3 2 1 5 5 C 1.50696 * 109.47488 * 270.00404 * 4 3 2 6 6 H 1.08006 * 119.99951 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00117 * 180.02562 * 5 4 3 8 8 N 1.31505 * 120.00012 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99663 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46996 * 90.00325 * 9 7 5 11 11 H 1.48501 * 109.46632 * 209.99987 * 9 7 5 12 12 H 1.48492 * 109.47378 * 329.99842 * 9 7 5 13 13 C 1.34775 * 120.00094 * 85.69658 * 3 2 1 14 14 O 1.21646 * 120.00060 * 185.29245 * 13 3 2 15 15 C 1.47033 * 119.99850 * 5.28442 * 13 3 2 16 16 C 1.38539 * 126.90866 * 259.82774 * 15 13 3 17 17 Cl 1.73604 * 127.33574 * 359.97438 * 16 15 13 18 18 C 1.39801 * 105.32677 * 180.24327 * 16 15 13 19 19 N 1.30840 * 107.87731 * 359.60160 * 18 16 15 20 20 N 1.28435 * 110.97930 * 0.42157 * 19 18 16 21 21 C 1.46502 * 125.18685 * 179.77100 * 20 19 18 22 22 H 1.08997 * 109.46772 * 184.99185 * 1 2 3 23 23 H 1.08998 * 109.47134 * 304.99526 * 1 2 3 24 24 H 1.08994 * 109.47034 * 64.99657 * 1 2 3 25 25 H 1.09001 * 109.47050 * 240.00012 * 2 1 3 26 26 H 1.08997 * 109.47334 * 120.00376 * 2 1 3 27 27 H 1.09001 * 109.46953 * 30.00647 * 4 3 2 28 28 H 1.09004 * 109.46779 * 150.00349 * 4 3 2 29 29 H 0.96998 * 120.00238 * 180.02562 * 8 7 5 30 30 H 1.08001 * 126.06167 * 179.76552 * 18 16 15 31 31 H 1.09003 * 109.46676 * 274.90753 * 21 20 19 32 32 H 1.08990 * 109.47042 * 34.90404 * 21 20 19 33 33 H 1.08997 * 109.46883 * 154.90584 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3524 2.0401 -1.2652 5 6 3.8026 1.7937 -1.5923 6 1 4.4145 1.2056 -0.9243 7 6 4.3487 2.3200 -2.7437 8 7 3.6038 3.0366 -3.5568 9 14 6.1466 2.0152 -3.1487 10 1 6.2689 0.7739 -3.9546 11 1 6.6808 3.1635 -3.9243 12 1 6.9194 1.8661 -1.8895 13 6 2.1603 2.0458 1.1639 14 8 2.4729 3.2214 1.1588 15 6 1.9372 1.3499 2.4397 16 6 0.7987 1.4010 3.2273 17 17 -0.6565 2.2957 2.9177 18 6 1.0735 0.5837 4.3277 19 7 2.2774 0.0948 4.1742 20 7 2.8121 0.5221 3.0874 21 6 4.1541 0.1749 2.6135 22 1 -0.3633 -1.0238 0.0894 23 1 -0.3633 0.5894 0.8418 24 1 -0.3633 0.4343 -0.9313 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.7267 1.6364 -2.0612 28 1 2.1775 3.1121 -1.1738 29 1 3.9878 3.4066 -4.3670 30 1 0.4088 0.3881 5.1562 31 1 4.8850 0.8407 3.0724 32 1 4.3802 -0.8559 2.8860 33 1 4.1955 0.2816 1.5295 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596891027.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:27 Heat of formation + Delta-G solvation = 19.477431 kcal Electronic energy + Delta-G solvation = -19238.935371 eV Core-core repulsion = 16133.955972 eV Total energy + Delta-G solvation = -3104.979400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.70925 -40.58362 -37.65400 -37.15095 -34.95307 -34.37986 -32.14171 -31.65248 -29.13977 -28.11727 -25.66807 -24.56653 -23.16885 -22.56331 -20.33191 -18.90882 -18.52364 -17.92806 -17.05717 -16.92901 -16.35529 -16.19572 -15.58949 -15.14315 -14.82524 -14.50937 -14.20719 -14.13547 -13.76190 -13.66419 -13.33062 -13.17596 -12.97865 -12.74845 -12.68923 -12.51522 -12.18983 -12.01153 -11.75899 -11.59749 -11.14921 -10.65062 -10.34208 -9.84459 -9.63800 -8.23622 -6.38805 0.34900 0.71547 1.25534 1.39429 1.41831 1.42808 1.51472 1.78726 2.14018 2.40389 3.07263 3.27186 3.48687 3.96061 3.99503 4.18448 4.27113 4.30606 4.37218 4.47501 4.52438 4.80462 4.87731 4.97822 5.10535 5.18719 5.29130 5.48299 5.52597 5.75078 6.00385 6.46401 6.68474 6.80959 7.04722 7.32795 8.84382 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.006293 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.945919 B = 4448.632367 C = 4935.497808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.105 3.895 3 N -0.580 5.580 4 C 0.261 3.739 5 C -0.545 4.545 6 H 0.062 0.938 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.580 3.420 14 O -0.570 6.570 15 C -0.011 4.011 16 C -0.128 4.128 17 Cl -0.023 7.023 18 C 0.033 3.967 19 N -0.276 5.276 20 N -0.265 5.265 21 C 0.077 3.923 22 H 0.094 0.906 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.030 0.970 28 H 0.002 0.998 29 H 0.268 0.732 30 H 0.231 0.769 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 -10.560 12.825 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.017 4.017 3 N -0.310 5.310 4 C 0.140 3.860 5 C -0.583 4.583 6 H 0.081 0.919 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.365 3.635 14 O -0.449 6.449 15 C -0.142 4.142 16 C -0.166 4.166 17 Cl 0.006 6.994 18 C -0.145 4.145 19 N -0.107 5.107 20 N -0.054 5.054 21 C -0.062 4.062 22 H 0.113 0.887 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.048 0.952 28 H 0.020 0.980 29 H 0.076 0.924 30 H 0.247 0.753 31 H 0.116 0.884 32 H 0.153 0.847 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.491 -10.533 13.024 17.110 hybrid contribution 0.047 1.080 -1.083 1.530 sum -3.444 -9.453 11.941 15.614 Atomic orbital electron populations 1.22207 0.94422 1.03655 1.02099 1.21686 0.95575 0.81138 1.03325 1.48233 1.61747 1.14786 1.06237 1.18903 0.95462 0.92219 0.79375 1.21659 0.96040 1.33668 1.06928 0.91942 1.25849 1.02870 0.94323 0.95865 1.70052 1.38285 1.35094 1.13216 0.85409 0.78865 0.78091 0.78442 1.18887 1.21102 1.19118 1.17228 0.77777 0.85615 0.82918 1.90800 1.49220 1.17488 1.87363 1.21205 0.93576 1.01815 0.97619 1.21381 0.90406 1.05749 0.99090 1.98339 1.32059 1.73495 1.95523 1.24016 0.93660 0.97380 0.99415 1.73217 1.10811 1.22319 1.04305 1.45726 1.14072 1.31169 1.14385 1.22563 0.76633 1.05748 1.01226 0.88704 0.92862 0.93013 0.89187 0.90604 0.95233 0.97953 0.92357 0.75303 0.88381 0.84730 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.57 10.21 71.98 0.74 -3.84 16 2 C 0.10 3.34 5.95 86.38 0.51 3.86 16 3 N -0.58 -24.48 2.46 -830.48 -2.05 -26.52 16 4 C 0.26 13.63 5.18 85.63 0.44 14.08 16 5 C -0.54 -29.61 9.39 25.60 0.24 -29.37 16 6 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 7 C 0.01 0.57 5.46 84.66 0.46 1.04 16 8 N -0.93 -54.47 13.29 21.45 0.28 -54.19 16 9 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 10 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 13 C 0.58 25.15 6.74 86.55 0.58 25.73 16 14 O -0.57 -30.43 16.66 -4.18 -0.07 -30.50 16 15 C -0.01 -0.38 4.95 40.76 0.20 -0.18 16 16 C -0.13 -3.82 6.43 22.72 0.15 -3.67 16 17 Cl -0.02 -0.65 28.21 -2.72 -0.08 -0.73 16 18 C 0.03 0.78 12.04 85.22 1.03 1.81 16 19 N -0.28 -7.16 11.89 -57.07 -0.68 -7.84 16 20 N -0.27 -7.60 3.51 -355.93 -1.25 -8.85 16 21 C 0.08 1.77 11.22 127.77 1.43 3.20 16 22 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.05 1.54 6.58 -2.39 -0.02 1.52 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.09 2.83 8.04 -2.39 -0.02 2.81 16 26 H 0.08 2.13 6.76 -2.39 -0.02 2.12 16 27 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 28 H 0.00 0.14 7.35 -2.38 -0.02 0.12 16 29 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.23 3.39 8.06 -2.91 -0.02 3.37 16 31 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 2.31 7.66 -2.39 -0.02 2.29 16 Total: -1.00 -70.49 305.65 5.09 -65.40 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.12 Total: 5.92 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 5.78 Total: 12.65 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -3.69 Total: -97.39 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.07 Total: -30.50 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -70.49 5.09 -65.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596891027.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.876 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds