Wall clock time and date at job start Mon Mar 30 2020 00:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86802 * 119.99870 * 2 1 4 4 H 1.48505 * 109.46849 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47216 * 119.99394 * 3 2 1 6 6 H 1.48498 * 109.47112 * 239.99854 * 3 2 1 7 7 C 1.39050 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00088 * 172.56630 * 7 2 1 9 9 N 1.36840 * 120.00422 * 352.56410 * 7 2 1 10 10 C 1.34771 * 120.00212 * 142.69420 * 9 7 2 11 11 O 1.21675 * 119.99792 * 357.83230 * 10 9 7 12 12 C 1.47018 * 120.00377 * 177.82898 * 10 9 7 13 13 C 1.38528 * 126.89371 * 353.38518 * 12 10 9 14 14 C 1.39640 * 105.34970 * 179.97438 * 13 12 10 15 15 N 1.30873 * 107.88246 * 359.97438 * 14 13 12 16 16 N 1.28453 * 110.94823 * 359.71573 * 15 14 13 17 17 C 1.46500 * 125.18888 * 180.31347 * 16 15 14 18 18 F 1.39903 * 109.46867 * 124.05646 * 17 16 15 19 19 F 1.39903 * 109.46840 * 244.04558 * 17 16 15 20 20 C 1.46503 * 119.99619 * 322.70424 * 9 7 2 21 21 C 1.52995 * 117.49847 * 339.63102 * 20 9 7 22 22 C 1.53002 * 117.49454 * 270.97314 * 20 9 7 23 23 H 0.96994 * 120.00400 * 355.17479 * 1 2 3 24 24 H 1.07996 * 127.32107 * 359.97438 * 13 12 10 25 25 H 1.07996 * 126.06023 * 179.97438 * 14 13 12 26 26 H 1.08993 * 109.47857 * 4.04487 * 17 16 15 27 27 H 1.08999 * 115.55143 * 125.30883 * 20 9 7 28 28 H 1.09004 * 117.50248 * 0.02562 * 21 20 9 29 29 H 1.09003 * 117.49610 * 145.02555 * 21 20 9 30 30 H 1.09000 * 117.50280 * 214.97984 * 22 20 9 31 31 H 1.09001 * 117.49575 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 1.2825 2.7465 -0.0006 5 1 3.1012 1.6965 1.2126 6 1 3.1014 1.6964 -1.2125 7 6 2.0089 -1.2042 0.0005 8 1 3.0822 -1.2081 -0.1205 9 7 1.3335 -2.3843 0.1544 10 6 1.7222 -3.4776 -0.5310 11 8 2.6488 -3.4057 -1.3163 12 6 1.0267 -4.7572 -0.3300 13 6 0.0478 -5.0328 0.6106 14 6 -0.2961 -6.3705 0.4051 15 7 0.4332 -6.8259 -0.5816 16 7 1.2109 -5.9111 -1.0381 17 6 2.1543 -6.0806 -2.1461 18 9 1.8912 -5.1243 -3.1328 19 9 3.4613 -5.9168 -1.6748 20 6 0.1876 -2.4591 1.0642 21 6 0.0747 -1.3850 2.1479 22 6 0.4680 -2.8153 2.5255 23 1 -0.4850 0.8370 0.0707 24 1 -0.3623 -4.3568 1.3462 25 1 -1.0331 -6.9302 0.9618 26 1 2.0429 -7.0790 -2.5687 27 1 -0.7383 -2.8298 0.6246 28 1 0.8528 -0.6224 2.1838 29 1 -0.9256 -1.0493 2.4215 30 1 -0.2737 -3.4200 3.0474 31 1 1.5049 -2.9945 2.8098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596916741.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:48 Heat of formation + Delta-G solvation = 11.774705 kcal Electronic energy + Delta-G solvation = -21705.184617 eV Core-core repulsion = 18048.074522 eV Total energy + Delta-G solvation = -3657.110095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.80567 -46.91712 -42.01471 -38.68915 -36.30973 -33.01086 -32.39868 -31.49635 -30.21958 -25.93518 -25.37948 -22.67283 -21.92384 -21.27154 -20.89550 -19.67487 -17.44419 -17.26167 -17.08736 -16.89207 -15.97693 -15.24260 -14.90827 -14.75510 -14.07811 -13.80048 -13.64401 -13.57648 -13.21531 -13.07272 -12.92450 -12.47359 -11.99882 -11.70270 -11.36533 -11.21729 -10.73969 -10.65186 -10.49220 -10.42835 -9.89919 -9.31544 -9.18533 -8.84886 -8.67738 -8.51736 -7.62658 -6.40041 -4.10201 1.74396 2.23540 2.94571 3.15905 3.19646 3.22708 3.79744 3.98943 4.14594 4.35395 4.60562 4.72166 4.96824 5.09227 5.21847 5.34920 5.59249 5.78428 5.88498 6.02028 6.11756 6.24539 6.30718 6.72115 6.82481 6.86565 6.89599 7.18514 7.42782 8.04660 8.22607 8.38724 9.01624 9.19312 9.80661 10.60710 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.007735 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.776701 B = 3618.918493 C = 4463.628665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.043 3.957 3 Si 0.922 3.078 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.308 4.308 8 H 0.095 0.905 9 N -0.388 5.388 10 C 0.510 3.490 11 O -0.568 6.568 12 C 0.025 3.975 13 C -0.218 4.218 14 C 0.015 3.985 15 N -0.295 5.295 16 N -0.341 5.341 17 C 0.508 3.492 18 F -0.167 7.167 19 F -0.171 7.171 20 C 0.100 3.900 21 C -0.113 4.113 22 C -0.231 4.231 23 H 0.271 0.729 24 H 0.183 0.817 25 H 0.186 0.814 26 H 0.157 0.843 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 -8.390 2.635 9.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.164 4.164 3 Si 0.748 3.252 4 H -0.207 1.207 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.436 4.436 8 H 0.113 0.887 9 N -0.105 5.105 10 C 0.297 3.703 11 O -0.452 6.452 12 C -0.101 4.101 13 C -0.246 4.246 14 C -0.165 4.165 15 N -0.124 5.124 16 N -0.138 5.138 17 C 0.374 3.626 18 F -0.149 7.149 19 F -0.152 7.152 20 C -0.006 4.006 21 C -0.151 4.151 22 C -0.269 4.269 23 H 0.081 0.919 24 H 0.200 0.800 25 H 0.203 0.797 26 H 0.174 0.826 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.794 -9.113 1.352 9.385 hybrid contribution 0.093 1.629 0.508 1.709 sum -1.701 -7.484 1.859 7.897 Atomic orbital electron populations 1.69974 1.05914 1.28163 1.44868 1.25435 0.95468 0.99725 0.95762 0.86062 0.79195 0.80547 0.79378 1.20705 1.19696 1.19531 1.19449 0.92381 0.81720 1.50066 0.88748 1.42610 1.26277 1.07901 1.33672 1.16903 0.86999 0.82594 0.83758 1.90720 1.31531 1.84919 1.37997 1.22259 1.01268 0.90400 0.96199 1.23301 1.00598 0.97479 1.03179 1.23658 1.01006 0.94851 0.97001 1.72969 1.06694 1.17804 1.14894 1.46697 1.31396 1.08075 1.27597 1.20877 0.73347 0.92201 0.76173 1.93162 1.93343 1.68384 1.59962 1.93140 1.36556 1.96733 1.88818 1.21387 0.90771 1.04207 0.84209 1.22807 1.01732 0.91005 0.99508 1.23711 1.01879 1.01490 0.99847 0.91907 0.80048 0.79664 0.82601 0.87568 0.88143 0.89890 0.89469 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.52 10.33 55.50 0.57 -20.94 16 2 C 0.04 1.08 3.70 -17.45 -0.06 1.02 16 3 Si 0.92 19.93 29.56 -169.99 -5.03 14.91 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.31 -8.29 8.42 -15.02 -0.13 -8.41 16 8 H 0.09 2.66 7.71 -52.48 -0.40 2.25 16 9 N -0.39 -9.82 2.87 -109.08 -0.31 -10.13 16 10 C 0.51 13.06 7.54 -12.70 -0.10 12.96 16 11 O -0.57 -16.06 13.66 5.21 0.07 -15.99 16 12 C 0.02 0.53 6.76 -82.06 -0.55 -0.03 16 13 C -0.22 -3.89 8.93 -38.95 -0.35 -4.24 16 14 C 0.02 0.24 12.03 -17.44 -0.21 0.03 16 15 N -0.30 -5.07 11.90 30.58 0.36 -4.70 16 16 N -0.34 -6.59 3.62 -62.39 -0.23 -6.81 16 17 C 0.51 8.78 5.66 59.85 0.34 9.12 16 18 F -0.17 -3.34 16.04 2.25 0.04 -3.30 16 19 F -0.17 -3.30 16.38 2.25 0.04 -3.26 16 20 C 0.10 2.12 2.97 -67.93 -0.20 1.92 16 21 C -0.11 -2.24 7.67 -26.70 -0.20 -2.45 16 22 C -0.23 -4.07 8.84 -26.69 -0.24 -4.31 16 23 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 24 H 0.18 2.99 3.33 -52.49 -0.17 2.81 16 25 H 0.19 2.00 8.06 -52.49 -0.42 1.57 16 26 H 0.16 1.81 8.14 -51.93 -0.42 1.39 16 27 H 0.11 2.22 6.73 -51.93 -0.35 1.87 16 28 H 0.10 2.22 6.18 -51.93 -0.32 1.89 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.09 1.25 7.66 -51.93 -0.40 0.85 16 31 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 LS Contribution 270.62 15.07 4.08 4.08 Total: -1.00 -31.40 270.62 -4.58 -35.98 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -2.47 Total: 4.58 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -1.70 Total: 5.61 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.40 Total: -42.59 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.07 Total: -15.99 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.07 Total: -6.56 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.40 -4.58 -35.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916741.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.751 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds