Wall clock time and date at job start Mon Mar 30 2020 00:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86802 * 119.99870 * 2 1 4 4 H 1.48505 * 109.46849 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47216 * 119.99394 * 3 2 1 6 6 H 1.48498 * 109.47112 * 239.99854 * 3 2 1 7 7 C 1.39050 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00088 * 172.56630 * 7 2 1 9 9 N 1.36840 * 120.00422 * 352.56410 * 7 2 1 10 10 C 1.34771 * 120.00212 * 142.69420 * 9 7 2 11 11 O 1.21675 * 119.99792 * 357.83230 * 10 9 7 12 12 C 1.47018 * 120.00377 * 177.82898 * 10 9 7 13 13 C 1.38528 * 126.89371 * 353.38518 * 12 10 9 14 14 C 1.39640 * 105.34970 * 179.97438 * 13 12 10 15 15 N 1.30873 * 107.88246 * 359.97438 * 14 13 12 16 16 N 1.28453 * 110.94823 * 359.71573 * 15 14 13 17 17 C 1.46500 * 125.18888 * 180.31347 * 16 15 14 18 18 F 1.39903 * 109.46867 * 124.05646 * 17 16 15 19 19 F 1.39903 * 109.46840 * 244.04558 * 17 16 15 20 20 C 1.46503 * 119.99619 * 322.70424 * 9 7 2 21 21 C 1.52995 * 117.49847 * 339.63102 * 20 9 7 22 22 C 1.53002 * 117.49454 * 270.97314 * 20 9 7 23 23 H 0.96994 * 120.00400 * 355.17479 * 1 2 3 24 24 H 1.07996 * 127.32107 * 359.97438 * 13 12 10 25 25 H 1.07996 * 126.06023 * 179.97438 * 14 13 12 26 26 H 1.08993 * 109.47857 * 4.04487 * 17 16 15 27 27 H 1.08999 * 115.55143 * 125.30883 * 20 9 7 28 28 H 1.09004 * 117.50248 * 0.02562 * 21 20 9 29 29 H 1.09003 * 117.49610 * 145.02555 * 21 20 9 30 30 H 1.09000 * 117.50280 * 214.97984 * 22 20 9 31 31 H 1.09001 * 117.49575 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 1.2825 2.7465 -0.0006 5 1 3.1012 1.6965 1.2126 6 1 3.1014 1.6964 -1.2125 7 6 2.0089 -1.2042 0.0005 8 1 3.0822 -1.2081 -0.1205 9 7 1.3335 -2.3843 0.1544 10 6 1.7222 -3.4776 -0.5310 11 8 2.6488 -3.4057 -1.3163 12 6 1.0267 -4.7572 -0.3300 13 6 0.0478 -5.0328 0.6106 14 6 -0.2961 -6.3705 0.4051 15 7 0.4332 -6.8259 -0.5816 16 7 1.2109 -5.9111 -1.0381 17 6 2.1543 -6.0806 -2.1461 18 9 1.8912 -5.1243 -3.1328 19 9 3.4613 -5.9168 -1.6748 20 6 0.1876 -2.4591 1.0642 21 6 0.0747 -1.3850 2.1479 22 6 0.4680 -2.8153 2.5255 23 1 -0.4850 0.8370 0.0707 24 1 -0.3623 -4.3568 1.3462 25 1 -1.0331 -6.9302 0.9618 26 1 2.0429 -7.0790 -2.5687 27 1 -0.7383 -2.8298 0.6246 28 1 0.8528 -0.6224 2.1838 29 1 -0.9256 -1.0493 2.4215 30 1 -0.2737 -3.4200 3.0474 31 1 1.5049 -2.9945 2.8098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916741.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:48 Heat of formation + Delta-G solvation = -9.427968 kcal Electronic energy + Delta-G solvation = -21706.104034 eV Core-core repulsion = 18048.074522 eV Total energy + Delta-G solvation = -3658.029512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.22714 -48.36589 -43.41763 -40.46652 -38.10550 -34.84549 -33.82724 -33.27889 -31.76957 -27.43186 -27.12060 -24.29977 -23.42815 -22.88179 -22.36303 -21.20369 -19.02769 -18.87081 -18.67733 -18.36651 -17.61734 -17.04854 -16.51451 -16.22106 -15.81517 -15.42510 -15.15984 -15.10697 -14.75230 -14.67882 -14.32788 -14.05224 -13.77028 -13.27965 -12.96878 -12.93596 -12.66700 -12.16557 -12.11682 -11.95401 -11.59715 -10.99045 -10.63272 -10.56020 -10.48852 -10.05271 -9.50112 -8.31831 -6.11457 0.20459 0.89685 1.39069 1.41604 1.48803 1.66442 2.19897 2.34451 2.55674 2.81600 2.97495 3.18794 3.33526 3.60378 3.70431 4.05768 4.20773 4.24033 4.34598 4.52496 4.60650 4.89939 4.94454 5.15077 5.34052 5.38095 5.40305 5.58534 5.63267 6.10027 6.43808 6.89661 7.08533 7.29774 7.90658 8.66952 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.007735 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.776701 B = 3618.918493 C = 4463.628665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.020 3.980 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.284 1.284 7 C -0.345 4.345 8 H 0.063 0.937 9 N -0.399 5.399 10 C 0.494 3.506 11 O -0.616 6.616 12 C -0.024 4.024 13 C -0.196 4.196 14 C 0.030 3.970 15 N -0.287 5.287 16 N -0.350 5.350 17 C 0.495 3.505 18 F -0.190 7.190 19 F -0.189 7.189 20 C 0.074 3.926 21 C -0.117 4.117 22 C -0.192 4.192 23 H 0.277 0.723 24 H 0.197 0.803 25 H 0.240 0.760 26 H 0.218 0.782 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.135 0.865 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 -9.680 4.296 11.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.186 4.186 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.188 1.188 6 H -0.210 1.210 7 C -0.474 4.474 8 H 0.081 0.919 9 N -0.115 5.115 10 C 0.283 3.717 11 O -0.503 6.503 12 C -0.149 4.149 13 C -0.224 4.224 14 C -0.150 4.150 15 N -0.115 5.115 16 N -0.147 5.147 17 C 0.363 3.637 18 F -0.171 7.171 19 F -0.171 7.171 20 C -0.030 4.030 21 C -0.154 4.154 22 C -0.230 4.230 23 H 0.087 0.913 24 H 0.213 0.787 25 H 0.256 0.744 26 H 0.234 0.766 27 H 0.128 0.872 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.153 0.847 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.931 -10.399 3.043 11.526 hybrid contribution 0.687 1.951 0.009 2.068 sum -3.244 -8.449 3.052 9.551 Atomic orbital electron populations 1.70014 1.06453 1.29119 1.44208 1.25988 0.96289 1.01639 0.94727 0.85246 0.78309 0.77448 0.78880 1.18938 1.18783 1.21004 1.19325 0.91586 0.83536 1.52912 0.91896 1.42800 1.26953 1.07361 1.34427 1.17548 0.86725 0.84266 0.83169 1.90654 1.33597 1.86117 1.39938 1.21925 1.03637 0.89943 0.99361 1.23576 0.98421 0.98781 1.01619 1.24499 1.00688 0.93816 0.95996 1.73001 1.06230 1.17138 1.15116 1.46909 1.32101 1.07684 1.27991 1.21875 0.72328 0.93891 0.75654 1.93107 1.93419 1.69742 1.60852 1.93093 1.38006 1.96908 1.89066 1.21566 0.89730 1.06624 0.85068 1.22752 1.01935 0.91402 0.99349 1.23733 1.02496 1.00162 0.96646 0.91317 0.78653 0.74363 0.76563 0.87197 0.90862 0.87977 0.84669 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.53 10.33 21.68 0.22 -43.30 16 2 C 0.02 1.01 3.70 84.96 0.31 1.32 16 3 Si 0.98 41.54 29.56 68.60 2.03 43.57 16 4 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.35 -19.47 8.42 84.11 0.71 -18.76 16 8 H 0.06 3.82 7.71 -2.91 -0.02 3.80 16 9 N -0.40 -20.84 2.87 -617.26 -1.77 -22.62 16 10 C 0.49 26.27 7.54 86.55 0.65 26.92 16 11 O -0.62 -36.95 13.66 -4.27 -0.06 -37.01 16 12 C -0.02 -1.02 6.76 40.77 0.28 -0.74 16 13 C -0.20 -6.45 8.93 22.68 0.20 -6.24 16 14 C 0.03 0.80 12.03 85.17 1.02 1.82 16 15 N -0.29 -8.91 11.90 -57.16 -0.68 -9.59 16 16 N -0.35 -13.11 3.62 -351.31 -1.27 -14.38 16 17 C 0.50 17.00 5.66 127.77 0.72 17.72 16 18 F -0.19 -7.81 16.04 44.97 0.72 -7.09 16 19 F -0.19 -7.50 16.38 44.97 0.74 -6.77 16 20 C 0.07 3.11 2.97 44.99 0.13 3.24 16 21 C -0.12 -4.48 7.67 30.62 0.23 -4.25 16 22 C -0.19 -6.30 8.84 30.62 0.27 -6.03 16 23 H 0.28 13.02 8.31 -92.71 -0.77 12.24 16 24 H 0.20 5.71 3.33 -2.91 -0.01 5.70 16 25 H 0.24 3.49 8.06 -2.91 -0.02 3.47 16 26 H 0.22 4.54 8.14 -2.39 -0.02 4.52 16 27 H 0.11 4.44 6.73 -2.39 -0.02 4.42 16 28 H 0.07 3.23 6.18 -2.38 -0.01 3.22 16 29 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 30 H 0.14 3.15 7.66 -2.39 -0.02 3.13 16 31 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -72.97 270.62 5.66 -67.31 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 1.19 Total: 14.87 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 4.54 Total: 15.01 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -3.50 Total: -89.89 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -0.06 Total: -37.01 kcal Atomic # 9 Polarization: -15.31 SS G_CDS: 1.46 Total: -13.85 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -72.97 5.66 -67.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916741.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.885 kcal (2) G-P(sol) polarization free energy of solvation -72.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds