Wall clock time and date at job start Mon Mar 30 2020 01:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47359 * 2 1 4 4 C 1.50703 * 109.46601 * 240.00952 * 2 1 3 5 5 H 1.08008 * 120.00038 * 239.99927 * 4 2 1 6 6 C 1.37878 * 120.00527 * 60.00023 * 4 2 1 7 7 N 1.31509 * 119.99706 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00324 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46960 * 89.99914 * 8 6 4 10 10 H 1.48496 * 109.46985 * 209.99894 * 8 6 4 11 11 H 1.48500 * 109.47202 * 330.00283 * 8 6 4 12 12 N 1.46501 * 109.47370 * 120.00878 * 2 1 3 13 13 C 1.46498 * 119.99570 * 59.99525 * 12 2 1 14 14 C 1.34774 * 119.99863 * 239.99464 * 12 2 1 15 15 O 1.21639 * 120.00164 * 4.95864 * 14 12 2 16 16 C 1.47025 * 119.99843 * 184.95355 * 14 12 2 17 17 C 1.38542 * 126.90682 * 99.27932 * 16 14 12 18 18 Cl 1.73602 * 127.33556 * 0.02940 * 17 16 14 19 19 C 1.39806 * 105.33107 * 180.02562 * 17 16 14 20 20 N 1.30840 * 107.87223 * 0.02562 * 19 17 16 21 21 N 1.28438 * 110.98362 * 359.70446 * 20 19 17 22 22 C 1.46500 * 125.18746 * 180.31417 * 21 20 19 23 23 H 1.08994 * 109.47705 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46836 * 299.99340 * 1 2 3 25 25 H 1.09001 * 109.47614 * 59.98722 * 1 2 3 26 26 H 0.96997 * 120.00364 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.47436 * 264.64275 * 13 12 2 28 28 H 1.09000 * 109.46725 * 144.64601 * 13 12 2 29 29 H 1.08998 * 109.47940 * 24.64620 * 13 12 2 30 30 H 1.07998 * 126.06619 * 179.97438 * 19 17 16 31 31 H 1.08994 * 109.47353 * 265.15569 * 22 21 20 32 32 H 1.09003 * 109.47136 * 25.16045 * 22 21 20 33 33 H 1.09000 * 109.46541 * 145.15058 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7102 -1.2306 5 1 2.6531 -1.5884 -1.1317 6 6 1.6991 -0.2390 -2.4829 7 7 0.9426 0.8299 -2.6033 8 14 2.3222 -1.1190 -4.0082 9 1 1.3444 -2.1610 -4.4127 10 1 2.4869 -0.1396 -5.1121 11 1 3.6305 -1.7562 -3.7124 12 7 2.0183 -0.6908 1.1960 13 6 1.6643 -2.0934 1.4276 14 6 2.7933 -0.0359 2.0832 15 8 3.0131 1.1517 1.9386 16 6 3.3729 -0.7570 3.2259 17 6 4.6632 -1.2508 3.3302 18 17 5.9287 -1.1482 2.1464 19 6 4.7290 -1.8491 4.5921 20 7 3.5613 -1.7074 5.1651 21 7 2.7483 -1.0710 4.4011 22 6 1.3621 -0.7357 4.7364 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5140 -0.8898 26 1 0.7086 1.1617 -3.4842 27 1 0.7915 -2.1451 2.0785 28 1 2.5016 -2.6059 1.9013 29 1 1.4366 -2.5727 0.4756 30 1 5.5906 -2.3418 5.0180 31 1 0.6964 -1.5005 4.3366 32 1 1.2517 -0.6880 5.8197 33 1 1.1072 0.2311 4.3023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597144382.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:45 Heat of formation + Delta-G solvation = 24.901913 kcal Electronic energy + Delta-G solvation = -19189.504219 eV Core-core repulsion = 16084.760043 eV Total energy + Delta-G solvation = -3104.744177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.68721 -40.61166 -37.63748 -37.28118 -34.92087 -34.34688 -32.36743 -30.84791 -28.20601 -27.72514 -27.31135 -24.90617 -22.83382 -22.18165 -20.33273 -18.91995 -18.32503 -17.89468 -17.08435 -16.90785 -16.40057 -16.26285 -15.37970 -15.17102 -14.59160 -14.45391 -14.21236 -13.91070 -13.64511 -13.54188 -13.18041 -12.97112 -12.90167 -12.76820 -12.74222 -12.69158 -12.22718 -12.15698 -11.60719 -11.25749 -11.14296 -10.54226 -10.31938 -9.83908 -9.53193 -8.16727 -6.32500 0.34564 0.74881 1.26588 1.40485 1.41560 1.43805 1.52916 1.73088 2.21883 2.43052 3.12304 3.30974 3.49043 3.99073 4.20579 4.24873 4.31476 4.37136 4.47441 4.59988 4.73409 4.88528 4.90626 5.01293 5.10131 5.42718 5.45707 5.55370 5.63246 5.97904 6.11971 6.55393 6.72259 6.79993 7.04848 7.38858 8.87945 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.006523 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.803180 B = 4291.677511 C = 4995.143405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.263 3.737 3 H 0.014 0.986 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.021 3.979 7 N -0.914 5.914 8 Si 0.960 3.040 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.575 5.575 13 C 0.082 3.918 14 C 0.577 3.423 15 O -0.577 6.577 16 C -0.011 4.011 17 C -0.134 4.134 18 Cl -0.029 7.029 19 C 0.031 3.969 20 N -0.274 5.274 21 N -0.262 5.262 22 C 0.076 3.924 23 H 0.049 0.951 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.266 0.734 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.228 0.772 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -8.581 13.665 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.162 3.838 3 H 0.032 0.968 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.304 5.304 13 C -0.060 4.060 14 C 0.361 3.639 15 O -0.456 6.456 16 C -0.142 4.142 17 C -0.172 4.172 18 Cl 0.000 7.000 19 C -0.146 4.146 20 N -0.105 5.105 21 N -0.051 5.051 22 C -0.063 4.063 23 H 0.068 0.932 24 H 0.045 0.955 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.245 0.755 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.774 -8.053 14.345 16.468 hybrid contribution 0.909 0.248 -1.981 2.194 sum 1.683 -7.805 12.364 14.718 Atomic orbital electron populations 1.21869 0.96222 1.00476 1.00426 1.18696 0.92199 0.92218 0.80657 0.96756 1.21530 1.32139 1.13218 0.90996 0.92166 1.25641 0.94979 0.95546 1.01762 1.69995 1.37083 1.23639 1.24557 0.85520 0.78872 0.78379 0.78680 1.19112 1.21109 1.19799 1.48207 1.46909 1.13294 1.21963 1.21820 1.00517 0.80471 1.03197 1.17266 0.78940 0.85683 0.81989 1.90787 1.61522 1.16571 1.76748 1.21173 0.94562 1.07055 0.91446 1.21474 0.89953 1.10094 0.95680 1.98353 1.48370 1.97401 1.55885 1.23969 0.97077 1.03110 0.90479 1.73212 1.01500 1.14401 1.21377 1.45782 1.12647 1.38163 1.08477 1.22636 0.74043 1.03366 1.06245 0.93163 0.95482 0.91143 0.92510 0.90666 0.91734 0.89913 0.75530 0.87127 0.85051 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.97 8.97 71.98 0.65 -5.32 16 2 C 0.26 13.27 2.63 44.24 0.12 13.39 16 3 H 0.01 0.87 6.91 -2.39 -0.02 0.86 16 4 C -0.54 -28.75 7.95 25.60 0.20 -28.54 16 5 H 0.06 3.15 7.43 -2.91 -0.02 3.13 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -51.37 11.32 21.45 0.24 -51.13 16 8 Si 0.96 42.46 29.54 68.60 2.03 44.49 16 9 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 12 N -0.57 -23.95 2.75 -831.16 -2.29 -26.23 16 13 C 0.08 2.62 9.17 127.77 1.17 3.79 16 14 C 0.58 24.53 6.95 86.55 0.60 25.13 16 15 O -0.58 -29.84 16.45 -4.15 -0.07 -29.91 16 16 C -0.01 -0.38 4.87 40.75 0.20 -0.19 16 17 C -0.13 -4.20 6.89 22.72 0.16 -4.05 16 18 Cl -0.03 -0.93 29.24 -2.72 -0.08 -1.01 16 19 C 0.03 0.76 12.04 85.22 1.03 1.78 16 20 N -0.27 -6.94 11.89 -57.07 -0.68 -7.61 16 21 N -0.26 -7.03 3.75 -355.93 -1.34 -8.36 16 22 C 0.08 1.40 11.11 127.77 1.42 2.82 16 23 H 0.05 2.04 7.67 -2.39 -0.02 2.03 16 24 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 26 H 0.27 14.17 8.31 -92.71 -0.77 13.39 16 27 H 0.07 1.89 7.95 -2.39 -0.02 1.87 16 28 H 0.06 1.91 7.00 -2.39 -0.02 1.90 16 29 H 0.08 2.78 7.11 -2.39 -0.02 2.76 16 30 H 0.23 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.11 1.58 7.95 -2.39 -0.02 1.56 16 32 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 1.79 7.93 -2.39 -0.02 1.77 16 Total: -1.00 -68.74 300.80 4.93 -63.81 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 1.13 Total: 5.59 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 5.99 Total: 10.37 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -4.06 Total: -93.34 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.07 Total: -29.91 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -68.74 4.93 -63.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144382.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.708 kcal (2) G-P(sol) polarization free energy of solvation -68.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds