Wall clock time and date at job start Mon Mar 30 2020 01:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28438 * 125.18607 * 2 1 4 4 C 1.30835 * 110.97952 * 179.73981 * 3 2 1 5 5 C 1.39808 * 107.87480 * 0.41336 * 4 3 2 6 6 Cl 1.73606 * 127.33155 * 179.86659 * 5 4 3 7 7 C 1.36744 * 125.18525 * 180.02562 * 2 1 3 8 8 C 1.47029 * 126.91023 * 359.97416 * 7 2 1 9 9 O 1.21647 * 119.99623 * 92.98789 * 8 7 2 10 10 N 1.34772 * 119.99879 * 272.99051 * 8 7 2 11 11 C 1.46505 * 119.99415 * 185.28468 * 10 8 7 12 12 C 1.53005 * 109.46751 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47146 * 180.02562 * 12 11 10 14 14 C 1.50693 * 109.47302 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00022 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00203 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99810 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00110 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46888 * 89.99689 * 18 16 14 20 20 H 1.48491 * 109.47138 * 209.99752 * 18 16 14 21 21 H 1.48499 * 109.47202 * 329.99713 * 18 16 14 22 22 H 1.09006 * 109.46543 * 274.74351 * 1 2 3 23 23 H 1.08997 * 109.47458 * 34.74497 * 1 2 3 24 24 H 1.08998 * 109.46681 * 154.74844 * 1 2 3 25 25 H 1.07998 * 126.06099 * 180.30094 * 4 3 2 26 26 H 0.96993 * 120.00658 * 5.29421 * 10 8 7 27 27 H 1.08994 * 109.47490 * 300.00028 * 11 10 8 28 28 H 1.09006 * 109.46874 * 60.00826 * 11 10 8 29 29 H 1.08999 * 109.47502 * 300.00511 * 12 11 10 30 30 H 1.08998 * 109.46956 * 60.00514 * 12 11 10 31 31 H 1.08999 * 109.47003 * 300.00408 * 13 12 11 32 32 H 1.09004 * 109.47147 * 59.99734 * 13 12 11 33 33 H 0.96996 * 119.99789 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7286 0.0055 5 6 3.5630 -0.6666 -0.0001 6 17 5.0079 -1.6289 0.0004 7 6 2.2530 -1.1176 -0.0005 8 6 1.8010 -2.5167 -0.0006 9 8 1.6659 -3.1121 -1.0528 10 7 1.5363 -3.1394 1.1650 11 6 1.1983 -4.5649 1.1735 12 6 0.9450 -5.0203 2.6121 13 6 0.5926 -6.5091 2.6212 14 6 0.3426 -6.9575 4.0379 15 1 0.4270 -6.2514 4.8507 16 6 0.0070 -8.2696 4.2967 17 7 -0.0953 -9.1296 3.3071 18 14 -0.3023 -8.8256 6.0531 19 1 -1.7403 -8.6532 6.3808 20 1 0.0690 -10.2567 6.1919 21 1 0.5187 -8.0089 6.9827 22 1 -0.3632 0.0850 1.0242 23 1 -0.3634 0.8444 -0.5857 24 1 -0.3632 -0.9295 -0.4384 25 1 4.3040 1.4189 0.0114 26 1 1.5695 -2.6439 1.9981 27 1 0.3006 -4.7290 0.5775 28 1 2.0246 -5.1368 0.7512 29 1 1.8424 -4.8560 3.2086 30 1 0.1186 -4.4484 3.0340 31 1 -0.3046 -6.6737 2.0246 32 1 1.4193 -7.0807 2.1992 33 1 -0.3317 -10.0526 3.4891 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597150693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:08 Heat of formation + Delta-G solvation = 0.696251 kcal Electronic energy + Delta-G solvation = -17811.469640 eV Core-core repulsion = 14705.675827 eV Total energy + Delta-G solvation = -3105.793813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.72656 -40.66866 -37.69541 -37.07180 -35.26711 -34.43748 -33.26885 -31.86979 -28.71937 -28.12154 -25.58028 -23.75633 -22.86425 -22.37664 -21.11718 -19.28836 -18.52760 -17.75774 -17.15092 -16.86847 -16.78329 -16.42836 -15.94905 -15.40726 -15.07128 -14.67500 -14.26568 -14.11967 -13.78095 -13.67579 -13.53303 -12.94443 -12.82212 -12.75609 -12.56957 -12.40637 -11.78700 -11.69330 -11.65164 -11.34208 -11.15242 -10.54350 -10.43620 -10.31269 -9.90018 -8.18924 -6.29929 0.27791 0.65545 1.08270 1.35703 1.42683 1.43603 1.54395 1.60660 2.06944 2.42828 3.15348 3.35035 3.45176 3.90122 4.09317 4.19115 4.22937 4.25075 4.33667 4.52554 4.53011 4.87159 4.92623 5.06468 5.16409 5.24946 5.47464 5.52511 5.71519 5.85234 6.20527 6.25855 6.74611 6.85484 6.87651 7.39744 8.93041 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027799 B = 0.003467 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.989245 B = 8075.224390 C = 8404.295257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.261 5.261 3 N -0.277 5.277 4 C 0.028 3.972 5 C -0.126 4.126 6 Cl -0.022 7.022 7 C -0.026 4.026 8 C 0.592 3.408 9 O -0.557 6.557 10 N -0.692 5.692 11 C 0.129 3.871 12 C -0.102 4.102 13 C 0.023 3.977 14 C -0.541 4.541 15 H 0.066 0.934 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.261 1.261 22 H 0.115 0.885 23 H 0.122 0.878 24 H 0.093 0.907 25 H 0.226 0.774 26 H 0.417 0.583 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.071 0.929 31 H -0.004 1.004 32 H -0.007 1.007 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.369 21.921 -4.261 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.050 5.050 3 N -0.108 5.108 4 C -0.149 4.149 5 C -0.164 4.164 6 Cl 0.007 6.993 7 C -0.157 4.157 8 C 0.375 3.625 9 O -0.433 6.433 10 N -0.343 5.343 11 C 0.005 3.995 12 C -0.140 4.140 13 C -0.014 4.014 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.185 1.185 22 H 0.133 0.867 23 H 0.141 0.859 24 H 0.112 0.888 25 H 0.242 0.758 26 H 0.253 0.747 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.442 22.132 -5.038 22.958 hybrid contribution 0.537 -1.459 0.864 1.779 sum 3.979 20.673 -4.174 21.463 Atomic orbital electron populations 1.22667 0.70116 1.06645 1.07009 1.45853 1.08799 1.00655 1.49664 1.73259 1.03723 1.13214 1.20600 1.24017 0.94473 0.92239 1.04156 1.21465 0.87029 0.93400 1.14535 1.98368 1.33167 1.70525 1.97260 1.21119 0.91694 0.89307 1.13571 1.17023 0.77105 0.84210 0.84182 1.90864 1.52606 1.67303 1.32575 1.45945 1.68073 1.11469 1.08842 1.21428 1.00323 0.78951 0.98760 1.21611 1.01767 0.97234 0.93410 1.18941 0.95073 0.91522 0.95894 1.21677 1.46766 0.95267 0.94149 0.91596 1.25983 0.95229 0.97125 1.01604 1.70101 1.49447 1.04379 1.33520 0.85454 0.78745 0.77339 0.79551 1.19804 1.21169 1.18523 0.86695 0.85915 0.88832 0.75756 0.74652 0.91835 0.92507 0.91484 0.90992 0.98585 0.98848 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 11.22 127.77 1.43 2.34 16 2 N -0.26 -5.23 3.75 -355.91 -1.34 -6.56 16 3 N -0.28 -5.56 11.89 -57.07 -0.68 -6.24 16 4 C 0.03 0.52 12.04 85.22 1.03 1.55 16 5 C -0.13 -2.90 6.89 22.72 0.16 -2.74 16 6 Cl -0.02 -0.50 29.24 -2.72 -0.08 -0.58 16 7 C -0.03 -0.63 6.72 40.76 0.27 -0.36 16 8 C 0.59 17.15 6.91 86.55 0.60 17.75 16 9 O -0.56 -20.64 17.12 -4.18 -0.07 -20.71 16 10 N -0.69 -18.20 5.55 -466.74 -2.59 -20.79 16 11 C 0.13 4.19 5.68 86.38 0.49 4.68 16 12 C -0.10 -3.70 5.27 30.59 0.16 -3.54 16 13 C 0.02 1.17 4.97 29.84 0.15 1.32 16 14 C -0.54 -29.37 9.11 25.60 0.23 -29.14 16 15 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 16 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 17 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 18 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 22 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 23 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.09 1.26 7.66 -2.39 -0.02 1.25 16 25 H 0.23 2.48 8.06 -2.91 -0.02 2.46 16 26 H 0.42 8.65 8.46 -92.71 -0.78 7.87 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 33 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -70.49 311.32 2.88 -67.60 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.35 Total: 5.79 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 4.98 Total: -7.76 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -4.32 Total: -89.37 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.07 Total: -20.71 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -70.49 2.88 -67.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597150693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.301 kcal (2) G-P(sol) polarization free energy of solvation -70.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds