Wall clock time and date at job start Mon Mar 30 2020 01:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 H 1.09003 * 109.47498 * 54.99584 * 3 2 1 5 5 C 1.50704 * 109.47398 * 174.99723 * 3 2 1 6 6 H 1.07996 * 120.00059 * 119.99943 * 5 3 2 7 7 C 1.37875 * 119.99587 * 299.99867 * 5 3 2 8 8 N 1.31512 * 120.00244 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99721 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46848 * 90.00251 * 9 7 5 11 11 H 1.48503 * 109.47156 * 210.00160 * 9 7 5 12 12 H 1.48495 * 109.47180 * 330.00239 * 9 7 5 13 13 N 1.46498 * 109.47234 * 294.99763 * 3 2 1 14 14 C 1.34776 * 120.00295 * 84.99666 * 13 3 2 15 15 O 1.21653 * 119.99702 * 355.65580 * 14 13 3 16 16 C 1.47027 * 120.00004 * 175.65513 * 14 13 3 17 17 C 1.38544 * 126.90654 * 99.94388 * 16 14 13 18 18 Cl 1.73607 * 127.33339 * 359.97438 * 17 16 14 19 19 C 1.39806 * 105.32811 * 179.97438 * 17 16 14 20 20 N 1.30837 * 107.87651 * 0.02562 * 19 17 16 21 21 N 1.28438 * 110.98009 * 359.73423 * 20 19 17 22 22 C 1.46499 * 125.18667 * 180.25380 * 21 20 19 23 23 H 1.09001 * 109.46899 * 60.00425 * 1 2 3 24 24 H 1.08997 * 109.46732 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47544 * 300.00429 * 1 2 3 26 26 H 1.08997 * 109.47544 * 239.99571 * 2 1 3 27 27 H 1.09001 * 109.46899 * 119.99575 * 2 1 3 28 28 H 0.97005 * 119.99886 * 179.97438 * 8 7 5 29 29 H 0.97007 * 119.99894 * 265.00389 * 13 3 2 30 30 H 1.07997 * 126.06190 * 179.97438 * 19 17 16 31 31 H 1.08992 * 109.47751 * 275.18201 * 22 21 20 32 32 H 1.08999 * 109.47202 * 35.19053 * 22 21 20 33 33 H 1.09011 * 109.46821 * 155.18155 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5420 1.4444 0.1239 6 1 4.1472 1.8890 -0.6522 7 6 4.1432 0.8786 1.2281 8 7 3.4061 0.3377 2.1734 9 14 6.0050 0.8803 1.3814 10 1 6.4426 2.1132 2.0839 11 1 6.4390 -0.3108 2.1549 12 1 6.6131 0.8397 0.0273 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3671 15 8 -0.3707 2.5639 -0.4614 16 6 0.0813 3.4041 -2.5874 17 6 -0.6775 2.9414 -3.6503 18 17 -1.4059 1.3748 -3.8206 19 6 -0.7316 4.0048 -4.5563 20 7 -0.0528 5.0009 -4.0475 21 7 0.4307 4.6890 -2.8992 22 6 1.2365 5.5735 -2.0540 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8292 -0.0607 2.9501 29 1 2.2721 2.1231 -1.9978 30 1 -1.2424 4.0039 -5.5078 31 1 2.2811 5.5161 -2.3599 32 1 0.8826 6.5989 -2.1599 33 1 1.1453 5.2634 -1.0129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597507558.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:48 Heat of formation + Delta-G solvation = 13.223630 kcal Electronic energy + Delta-G solvation = -19006.391532 eV Core-core repulsion = 15901.140947 eV Total energy + Delta-G solvation = -3105.250585 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.65438 -40.60768 -37.63213 -37.00233 -34.50963 -34.27696 -33.07066 -31.60976 -28.97031 -28.11349 -25.39724 -24.14315 -22.80394 -21.71726 -21.12141 -19.60019 -18.12340 -17.67518 -17.12606 -16.91044 -16.44557 -16.22762 -15.41726 -15.26603 -14.74372 -14.61040 -14.08366 -13.74793 -13.65296 -13.51968 -13.18210 -12.93361 -12.89660 -12.73802 -12.68708 -12.20446 -12.10400 -11.65364 -11.50690 -11.11709 -11.09150 -10.54178 -10.35068 -9.83667 -9.79928 -8.16828 -6.34238 0.35184 0.74626 1.30013 1.41854 1.45677 1.47324 1.56906 1.81790 2.28118 2.49136 3.13373 3.49371 3.62214 3.99312 4.24070 4.29977 4.37723 4.50239 4.53407 4.59295 4.76187 5.05688 5.12208 5.26751 5.41131 5.44675 5.52712 5.58201 5.76091 5.84056 6.13452 6.69196 6.75295 6.80705 7.19697 7.39683 8.88511 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022661 B = 0.005976 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.281978 B = 4684.621342 C = 5403.195096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 C 0.281 3.719 4 H 0.009 0.991 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.262 1.262 13 N -0.683 5.683 14 C 0.581 3.419 15 O -0.556 6.556 16 C -0.021 4.021 17 C -0.129 4.129 18 Cl -0.022 7.022 19 C 0.029 3.971 20 N -0.279 5.279 21 N -0.264 5.264 22 C 0.078 3.922 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.028 0.972 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.228 0.772 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 7.028 -12.301 14.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.179 3.821 4 H 0.027 0.973 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.187 1.187 13 N -0.331 5.331 14 C 0.363 3.637 15 O -0.434 6.434 16 C -0.152 4.152 17 C -0.167 4.167 18 Cl 0.006 6.994 19 C -0.149 4.149 20 N -0.110 5.110 21 N -0.052 5.052 22 C -0.061 4.061 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.238 0.762 30 H 0.245 0.755 31 H 0.128 0.872 32 H 0.144 0.856 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.751 7.945 -11.556 14.516 hybrid contribution 0.678 -1.204 0.403 1.440 sum -3.073 6.740 -11.152 13.388 Atomic orbital electron populations 1.21751 0.96984 0.99160 1.00631 1.21811 0.93735 0.99141 1.01439 1.18516 0.93959 0.89269 0.80364 0.97346 1.21504 0.91000 1.39309 1.06742 0.90878 1.25700 1.03052 0.94269 0.95024 1.70035 1.37059 1.38115 1.09842 0.85410 0.79325 0.77483 0.78520 1.20192 1.21199 1.18660 1.46303 1.14143 1.54710 1.17946 1.17065 0.82692 0.79517 0.84377 1.90836 1.49985 1.61894 1.40671 1.21381 1.06489 0.89237 0.98094 1.21449 1.06311 0.91708 0.97253 1.98347 1.81082 1.22653 1.97305 1.24012 1.01797 0.87084 1.01971 1.73211 1.14205 1.26905 0.96671 1.45779 1.37316 1.08599 1.13529 1.22574 0.95835 0.94727 0.92927 0.93429 0.93881 0.95264 0.94166 0.90671 0.92507 0.76208 0.75524 0.87156 0.85604 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.46 71.98 0.61 -5.14 16 2 C -0.12 -5.89 5.45 30.60 0.17 -5.73 16 3 C 0.28 13.71 2.24 44.25 0.10 13.81 16 4 H 0.01 0.49 7.64 -2.39 -0.02 0.48 16 5 C -0.55 -27.38 8.73 25.60 0.22 -27.16 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -50.19 11.29 21.45 0.24 -49.95 16 9 Si 0.97 40.31 29.54 68.60 2.03 42.34 16 10 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 11 H -0.29 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 13 N -0.68 -27.26 5.02 -449.74 -2.26 -29.52 16 14 C 0.58 22.85 5.64 86.55 0.49 23.34 16 15 O -0.56 -26.02 13.91 -4.20 -0.06 -26.07 16 16 C -0.02 -0.68 6.71 40.76 0.27 -0.41 16 17 C -0.13 -3.78 6.89 22.72 0.16 -3.63 16 18 Cl -0.02 -0.64 29.24 -2.72 -0.08 -0.72 16 19 C 0.03 0.68 12.04 85.22 1.03 1.71 16 20 N -0.28 -7.17 11.89 -57.07 -0.68 -7.85 16 21 N -0.26 -7.19 3.75 -355.92 -1.34 -8.53 16 22 C 0.08 1.59 11.22 127.77 1.43 3.02 16 23 H 0.05 2.09 5.54 -2.39 -0.01 2.08 16 24 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.03 1.39 7.80 -2.39 -0.02 1.38 16 26 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 4.04 5.95 -2.39 -0.01 4.02 16 28 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 29 H 0.40 14.19 8.53 -92.70 -0.79 13.40 16 30 H 0.23 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 2.02 7.66 -2.38 -0.02 2.00 16 Total: -1.00 -63.18 298.42 3.14 -60.04 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.35 Total: 18.97 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 4.92 Total: 1.31 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -4.03 Total: -95.85 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.06 Total: -26.07 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -63.18 3.14 -60.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507558.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.261 kcal (2) G-P(sol) polarization free energy of solvation -63.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds