Wall clock time and date at job start Mon Mar 30 2020 01:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47146 * 2 1 4 4 N 1.28438 * 125.18562 * 275.30849 * 3 2 1 5 5 C 1.30831 * 110.98036 * 180.31634 * 4 3 2 6 6 C 1.39812 * 107.87493 * 359.71208 * 5 4 3 7 7 Cl 1.73603 * 127.33716 * 179.97438 * 6 5 4 8 8 C 1.36739 * 125.18813 * 95.13140 * 3 2 1 9 9 C 1.47037 * 126.90456 * 359.96595 * 8 3 2 10 10 O 1.21642 * 119.99930 * 266.10611 * 9 8 3 11 11 N 1.34771 * 119.99737 * 86.11211 * 9 8 3 12 12 C 1.46503 * 120.00064 * 174.78417 * 11 9 8 13 13 H 1.09003 * 109.46970 * 324.99889 * 12 11 9 14 14 C 1.53003 * 109.47138 * 84.99505 * 12 11 9 15 15 C 1.50696 * 109.47493 * 204.99755 * 12 11 9 16 16 H 1.07998 * 120.00045 * 359.97438 * 15 12 11 17 17 C 1.37871 * 120.00171 * 179.97438 * 15 12 11 18 18 N 1.31522 * 120.00295 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00136 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.47365 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47259 * 120.00168 * 19 17 15 22 22 H 1.48505 * 109.47339 * 240.00238 * 19 17 15 23 23 H 1.09000 * 109.46988 * 60.00213 * 1 2 3 24 24 H 1.09002 * 109.47479 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47359 * 300.00093 * 1 2 3 26 26 H 1.09002 * 109.46964 * 240.00214 * 2 1 3 27 27 H 1.09000 * 109.46988 * 119.99787 * 2 1 3 28 28 H 1.07998 * 126.06543 * 179.73320 * 5 4 3 29 29 H 0.97006 * 120.00181 * 354.77936 * 11 9 8 30 30 H 1.09003 * 109.46877 * 60.00327 * 14 12 11 31 31 H 1.09000 * 109.47020 * 180.02562 * 14 12 11 32 32 H 1.09002 * 109.47036 * 300.00395 * 14 12 11 33 33 H 0.96990 * 120.00280 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.1735 2.1114 -1.0452 5 6 2.6306 3.2950 -0.7262 6 6 2.7804 3.3370 0.6633 7 17 3.3528 4.6671 1.6209 8 6 2.3753 2.0908 1.1130 9 6 2.3419 1.6231 2.5066 10 8 1.3658 1.8426 3.1986 11 7 3.3927 0.9514 3.0173 12 6 3.4089 0.5853 4.4357 13 1 2.9244 1.3686 5.0187 14 6 2.6584 -0.7337 4.6306 15 6 4.8346 0.4249 4.8970 16 1 5.6474 0.5797 4.2029 17 6 5.1013 0.0805 6.2050 18 7 4.1116 -0.1085 7.0503 19 14 6.8685 -0.1191 6.7766 20 1 7.7888 0.1449 5.6414 21 1 7.1457 0.8431 7.8733 22 1 7.0760 -1.5045 7.2694 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.8525 4.0975 -1.4140 29 1 4.1384 0.7101 2.4456 30 1 3.1429 -1.5170 4.0477 31 1 2.6700 -1.0058 5.6861 32 1 1.6272 -0.6176 4.2970 33 1 4.2992 -0.3512 7.9704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598683259.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:38 Heat of formation + Delta-G solvation = 8.535940 kcal Electronic energy + Delta-G solvation = -18785.140745 eV Core-core repulsion = 15679.686886 eV Total energy + Delta-G solvation = -3105.453858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.70021 -40.48025 -37.66453 -36.82587 -35.56390 -34.43313 -32.30262 -30.84863 -30.46961 -27.36175 -25.41056 -24.61455 -22.83221 -22.22778 -21.05969 -19.62850 -18.15894 -17.54897 -17.16448 -16.84911 -16.44942 -16.07084 -15.44683 -15.33845 -14.97960 -14.54549 -14.39030 -13.91032 -13.76424 -13.13689 -13.06688 -12.91310 -12.88421 -12.79136 -12.76045 -12.35845 -12.30008 -12.14776 -11.59532 -11.25967 -11.11891 -10.63637 -10.37899 -9.96035 -9.86035 -8.19690 -6.36887 0.34688 0.71209 1.24707 1.40558 1.44170 1.46052 1.57227 1.72889 2.26173 2.46048 3.11498 3.42194 3.56483 3.89673 3.91760 4.14142 4.20002 4.31323 4.63849 4.72654 4.73666 4.89351 5.04131 5.08956 5.13011 5.34462 5.48285 5.55051 5.62781 5.82881 6.05481 6.64711 6.71233 6.80527 7.14056 7.36683 8.86819 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020441 B = 0.005829 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.490351 B = 4802.820829 C = 5557.737608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 N -0.259 5.259 4 N -0.274 5.274 5 C 0.030 3.970 6 C -0.130 4.130 7 Cl -0.026 7.026 8 C -0.020 4.020 9 C 0.583 3.417 10 O -0.570 6.570 11 N -0.682 5.682 12 C 0.272 3.728 13 H 0.003 0.997 14 C -0.134 4.134 15 C -0.547 4.547 16 H 0.072 0.928 17 C 0.019 3.981 18 N -0.915 5.915 19 Si 0.970 3.030 20 H -0.262 1.262 21 H -0.284 1.284 22 H -0.277 1.277 23 H 0.072 0.928 24 H 0.110 0.890 25 H 0.038 0.962 26 H 0.138 0.862 27 H 0.097 0.903 28 H 0.229 0.771 29 H 0.405 0.595 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.017 0.983 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 1.045 -16.208 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.048 5.048 4 N -0.104 5.104 5 C -0.148 4.148 6 C -0.168 4.168 7 Cl 0.003 6.997 8 C -0.151 4.151 9 C 0.365 3.635 10 O -0.448 6.448 11 N -0.330 5.330 12 C 0.170 3.830 13 H 0.021 0.979 14 C -0.193 4.193 15 C -0.585 4.585 16 H 0.090 0.910 17 C -0.181 4.181 18 N -0.553 5.553 19 Si 0.795 3.205 20 H -0.186 1.186 21 H -0.210 1.210 22 H -0.202 1.202 23 H 0.091 0.909 24 H 0.129 0.871 25 H 0.058 0.942 26 H 0.156 0.844 27 H 0.115 0.885 28 H 0.245 0.755 29 H 0.240 0.760 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.036 0.964 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.717 0.418 -16.324 16.554 hybrid contribution 1.191 0.608 1.417 1.949 sum -1.526 1.026 -14.907 15.020 Atomic orbital electron populations 1.22142 0.92473 1.05145 1.02433 1.22461 0.97066 0.74905 1.06878 1.46025 1.44808 1.12968 1.00975 1.73181 1.19451 1.04494 1.13286 1.24002 1.02557 0.96218 0.92011 1.21483 1.11418 0.90302 0.93641 1.98353 1.87179 1.43103 1.71079 1.21293 1.09686 0.94576 0.89578 1.17165 0.83405 0.78252 0.84639 1.90801 1.34331 1.58231 1.61457 1.46322 1.19921 1.53925 1.12800 1.18503 0.96125 0.92788 0.75593 0.97880 1.21898 0.96280 0.98185 1.02921 1.21508 0.91559 1.48852 0.96557 0.90987 1.25724 1.01712 0.94266 0.96446 1.70038 1.32964 1.47111 1.05181 0.85329 0.79198 0.77708 0.78313 1.18566 1.21012 1.20236 0.90874 0.87099 0.94241 0.84370 0.88452 0.75498 0.76006 0.93603 0.91215 0.96360 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 10.24 71.98 0.74 -2.45 16 2 C 0.11 2.19 6.91 86.38 0.60 2.78 16 3 N -0.26 -7.09 3.35 -334.58 -1.12 -8.22 16 4 N -0.27 -7.04 11.89 -57.07 -0.68 -7.72 16 5 C 0.03 0.72 12.04 85.22 1.03 1.74 16 6 C -0.13 -3.99 6.89 22.72 0.16 -3.84 16 7 Cl -0.03 -0.79 29.24 -2.72 -0.08 -0.87 16 8 C -0.02 -0.69 6.72 40.76 0.27 -0.41 16 9 C 0.58 23.98 6.87 86.55 0.59 24.58 16 10 O -0.57 -28.21 16.77 -4.17 -0.07 -28.28 16 11 N -0.68 -28.18 5.06 -449.75 -2.28 -30.46 16 12 C 0.27 13.71 2.52 44.24 0.11 13.83 16 13 H 0.00 0.20 7.66 -2.39 -0.02 0.18 16 14 C -0.13 -6.45 9.26 71.98 0.67 -5.78 16 15 C -0.55 -28.25 8.73 25.60 0.22 -28.03 16 16 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 17 C 0.02 1.00 5.30 84.65 0.45 1.45 16 18 N -0.91 -51.13 11.32 21.45 0.24 -50.89 16 19 Si 0.97 41.25 29.54 68.60 2.03 43.28 16 20 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 23 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.10 2.16 7.65 -2.39 -0.02 2.14 16 28 H 0.23 3.59 8.06 -2.91 -0.02 3.56 16 29 H 0.40 14.58 8.53 -92.70 -0.79 13.79 16 30 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 32 H 0.02 0.82 8.09 -2.39 -0.02 0.80 16 33 H 0.27 14.07 8.31 -92.72 -0.77 13.30 16 Total: -1.00 -65.91 306.78 3.22 -62.69 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.35 Total: 16.60 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 4.83 Total: 3.87 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -3.83 Total: -97.29 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.07 Total: -28.28 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -65.91 3.22 -62.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598683259.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.222 kcal (2) G-P(sol) polarization free energy of solvation -65.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds