Wall clock time and date at job start Mon Mar 30 2020 01:22:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46497 * 109.47053 * 2 1
4 4 N 1.28441 * 125.18797 * 275.20449 * 3 2 1
5 5 C 1.30835 * 110.98353 * 180.25979 * 4 3 2
6 6 C 1.39808 * 107.87385 * 359.73687 * 5 4 3
7 7 Cl 1.73599 * 127.33449 * 179.97438 * 6 5 4
8 8 C 1.36747 * 125.19351 * 95.01227 * 3 2 1
9 9 C 1.47037 * 126.89862 * 0.02562 * 8 3 2
10 10 O 1.21649 * 119.99714 * 269.38644 * 9 8 3
11 11 N 1.34769 * 120.00254 * 89.38985 * 9 8 3
12 12 C 1.46499 * 120.00196 * 174.92652 * 11 9 8
13 13 C 1.52997 * 109.47271 * 180.27566 * 12 11 9
14 14 C 1.50701 * 109.47179 * 180.02562 * 13 12 11
15 15 H 1.08000 * 120.00091 * 359.97438 * 14 13 12
16 16 C 1.37874 * 120.00398 * 179.97438 * 14 13 12
17 17 N 1.31522 * 119.99733 * 0.02562 * 16 14 13
18 18 Si 1.86793 * 120.00427 * 179.97438 * 16 14 13
19 19 H 1.48507 * 109.47051 * 0.02562 * 18 16 14
20 20 H 1.48500 * 109.47360 * 120.00101 * 18 16 14
21 21 H 1.48502 * 109.47555 * 240.00038 * 18 16 14
22 22 H 1.09004 * 109.47043 * 300.00283 * 1 2 3
23 23 H 1.08993 * 109.46893 * 59.99973 * 1 2 3
24 24 H 1.08994 * 109.47051 * 180.02562 * 1 2 3
25 25 H 1.08993 * 109.47075 * 239.99235 * 2 1 3
26 26 H 1.09002 * 109.47212 * 119.99515 * 2 1 3
27 27 H 1.07994 * 126.05970 * 179.75449 * 5 4 3
28 28 H 0.96999 * 119.99901 * 355.20523 * 11 9 8
29 29 H 1.09004 * 109.47201 * 300.27944 * 12 11 9
30 30 H 1.08999 * 109.47152 * 60.27397 * 12 11 9
31 31 H 1.08999 * 109.47067 * 299.99937 * 13 12 11
32 32 H 1.08999 * 109.47170 * 59.99842 * 13 12 11
33 33 H 0.96993 * 120.00118 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 7 2.1753 2.1108 -1.0454
5 6 2.6307 3.2950 -0.7262
6 6 2.7779 3.3379 0.6635
7 17 3.3472 4.6691 1.6213
8 6 2.3731 2.0917 1.1132
9 6 2.3381 1.6245 2.5070
10 8 1.3380 1.7907 3.1792
11 7 3.4141 1.0123 3.0397
12 6 3.4212 0.6466 4.4583
13 6 4.7521 -0.0234 4.8056
14 6 4.7591 -0.4001 6.2648
15 1 3.9004 -0.1830 6.8827
16 6 5.8618 -1.0219 6.8110
17 7 6.9078 -1.2859 6.0586
18 14 5.8708 -1.4883 8.6197
19 1 4.5838 -1.0850 9.2413
20 1 6.0448 -2.9571 8.7514
21 1 6.9908 -0.7939 9.3045
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0276 0.0005
25 1 1.8933 -0.5139 -0.8899
26 1 1.8934 -0.5138 0.8900
27 1 2.8532 4.0972 -1.4141
28 1 4.1854 0.8174 2.4847
29 1 3.2964 1.5433 5.0653
30 1 2.6030 -0.0449 4.6593
31 1 4.8768 -0.9201 4.1986
32 1 5.5703 0.6681 4.6046
33 1 7.6837 -1.7230 6.4429
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000598696534.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:22:32
Heat of formation + Delta-G solvation = 22.203817 kcal
Electronic energy + Delta-G solvation = -18187.702013 eV
Core-core repulsion = 15082.840839 eV
Total energy + Delta-G solvation = -3104.861175 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.083 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-42.72641 -39.13938 -36.63365 -35.04308 -34.73353 -32.95998 -31.17314 -29.97721
-29.44117 -25.25437 -24.31210 -22.88159 -21.73352 -21.02416 -19.89252 -18.15236
-16.61965 -16.24875 -16.12344 -15.49506 -15.15615 -14.61250 -14.58657 -14.39590
-13.94558 -13.39940 -13.09667 -12.96873 -12.40108 -12.36382 -11.93374 -11.75550
-11.58583 -11.29053 -11.10688 -10.69978 -10.58844 -10.44179 -10.18156 -9.65323
-9.41091 -9.31305 -8.84481 -8.73202 -8.45908 -6.14524 -4.17853 1.39783
1.69644 2.32938 2.36225 2.78677 3.25291 3.32618 3.35877 3.42161
4.25855 4.36838 4.60783 4.68959 4.76721 4.89711 5.08495 5.22910
5.24986 5.32994 5.49039 5.81381 6.02634 6.17773 6.21315 6.46071
6.57496 6.66913 7.42375 7.52638 7.71594 7.76851 7.83134 8.17007
8.31459 8.88083 9.47562 10.97067
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.022724 B = 0.004318 C = 0.003940
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1231.897326 B = 6482.352803 C = 7104.018843
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.115 3.885
3 N -0.263 5.263
4 N -0.274 5.274
5 C 0.022 3.978
6 C -0.119 4.119
7 Cl -0.020 7.020
8 C -0.002 4.002
9 C 0.580 3.420
10 O -0.523 6.523
11 N -0.702 5.702
12 C 0.120 3.880
13 C 0.012 3.988
14 C -0.522 4.522
15 H 0.061 0.939
16 C 0.060 3.940
17 N -0.893 5.893
18 Si 0.897 3.103
19 H -0.271 1.271
20 H -0.283 1.283
21 H -0.283 1.283
22 H 0.070 0.930
23 H 0.068 0.932
24 H 0.084 0.916
25 H 0.108 0.892
26 H 0.103 0.897
27 H 0.194 0.806
28 H 0.401 0.599
29 H 0.062 0.938
30 H 0.062 0.938
31 H 0.023 0.977
32 H 0.025 0.975
33 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.189 5.213 -14.602 17.534
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.005 4.005
3 N -0.052 5.052
4 N -0.104 5.104
5 C -0.157 4.157
6 C -0.157 4.157
7 Cl 0.009 6.991
8 C -0.133 4.133
9 C 0.361 3.639
10 O -0.398 6.398
11 N -0.352 5.352
12 C -0.001 4.001
13 C -0.025 4.025
14 C -0.561 4.561
15 H 0.079 0.921
16 C -0.142 4.142
17 N -0.532 5.532
18 Si 0.724 3.276
19 H -0.195 1.195
20 H -0.209 1.209
21 H -0.209 1.209
22 H 0.089 0.911
23 H 0.087 0.913
24 H 0.103 0.897
25 H 0.126 0.874
26 H 0.121 0.879
27 H 0.211 0.789
28 H 0.235 0.765
29 H 0.080 0.920
30 H 0.080 0.920
31 H 0.041 0.959
32 H 0.043 0.957
33 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -9.063 4.532 -14.891 18.012
hybrid contribution 0.858 0.309 1.406 1.676
sum -8.205 4.841 -13.485 16.511
Atomic orbital electron populations
1.22179 0.92982 1.03863 1.03876 1.22136 0.96601 0.75999 1.05722
1.45752 1.45372 1.12278 1.01758 1.73189 1.19418 1.04214 1.13615
1.23481 1.03751 0.95703 0.92717 1.21241 1.11126 0.90724 0.92645
1.98362 1.87237 1.42900 1.70626 1.21501 1.08050 0.93528 0.90198
1.16913 0.84317 0.78866 0.83820 1.90847 1.31959 1.55652 1.61321
1.46367 1.17434 1.57752 1.13638 1.21889 1.01865 0.99610 0.76755
1.19343 0.89942 0.95766 0.97473 1.21053 1.01724 1.39141 0.94165
0.92114 1.24991 0.95395 0.95547 0.98279 1.69962 1.05376 1.42037
1.35818 0.86455 0.78207 0.78148 0.84756 1.19544 1.20924 1.20885
0.91135 0.91289 0.89734 0.87397 0.87873 0.78946 0.76452 0.91978
0.91989 0.95870 0.95711 0.92831
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.53 10.24 37.16 0.38 -1.15 16
2 C 0.11 1.12 6.91 -4.04 -0.03 1.10 16
3 N -0.26 -3.37 3.35 -57.11 -0.19 -3.57 16
4 N -0.27 -3.49 11.89 30.61 0.36 -3.13 16
5 C 0.02 0.26 12.04 -17.39 -0.21 0.05 16
6 C -0.12 -1.67 6.89 -38.89 -0.27 -1.94 16
7 Cl -0.02 -0.27 29.24 -51.86 -1.52 -1.79 16
8 C 0.00 -0.03 6.72 -82.00 -0.55 -0.58 16
9 C 0.58 9.96 6.91 -12.70 -0.09 9.87 16
10 O -0.52 -10.64 17.12 5.23 0.09 -10.55 16
11 N -0.70 -11.97 5.55 -61.51 -0.34 -12.31 16
12 C 0.12 2.43 5.62 -4.04 -0.02 2.41 16
13 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16
14 C -0.52 -14.06 9.11 -34.44 -0.31 -14.37 16
15 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16
16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
17 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16
18 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16
19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16
22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
25 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16
26 H 0.10 1.01 7.65 -51.93 -0.40 0.61 16
27 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16
28 H 0.40 6.14 8.46 -40.82 -0.35 5.80 16
29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16
30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16
31 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16
33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16
LS Contribution 311.62 15.07 4.70 4.70
Total: -1.00 -31.30 311.62 -6.61 -37.91
By element:
Atomic # 1 Polarization: 4.68 SS G_CDS: -4.09 Total: 0.59 kcal
Atomic # 6 Polarization: -1.58 SS G_CDS: -1.34 Total: -2.92 kcal
Atomic # 7 Polarization: -44.43 SS G_CDS: 0.57 Total: -43.87 kcal
Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal
Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal
Atomic # 17 Polarization: -0.27 SS G_CDS: -1.52 Total: -1.79 kcal
Total LS contribution 4.70 Total: 4.70 kcal
Total: -31.30 -6.61 -37.91 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598696534.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.111 kcal
(2) G-P(sol) polarization free energy of solvation -31.296 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.815 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.204 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds