Wall clock time and date at job start Mon Mar 30 2020 01:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47631 * 2 1 4 4 C 1.36855 * 120.00075 * 273.92633 * 3 2 1 5 5 H 1.07995 * 120.00343 * 178.32064 * 4 3 2 6 6 C 1.39041 * 119.99841 * 358.04878 * 4 3 2 7 7 N 1.31372 * 120.00054 * 28.22643 * 6 4 3 8 8 Si 1.86797 * 119.99830 * 208.22979 * 6 4 3 9 9 H 1.48502 * 109.47526 * 60.00154 * 8 6 4 10 10 H 1.48505 * 109.47016 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47396 * 299.99479 * 8 6 4 12 12 C 1.34772 * 120.00025 * 93.91904 * 3 2 1 13 13 O 1.21691 * 120.00049 * 176.18532 * 12 3 2 14 14 C 1.46891 * 120.00261 * 356.18663 * 12 3 2 15 15 C 1.38658 * 126.91916 * 259.99047 * 14 12 3 16 16 Cl 1.73606 * 127.33619 * 0.02562 * 15 14 12 17 17 C 1.39771 * 105.32198 * 179.97438 * 15 14 12 18 18 N 1.30856 * 107.89372 * 359.97438 * 17 15 14 19 19 N 1.28444 * 110.99975 * 359.74021 * 18 17 15 20 20 C 1.46498 * 125.18772 * 180.25283 * 19 18 17 21 21 C 1.52999 * 109.47352 * 275.45089 * 20 19 18 22 22 H 1.08999 * 109.47158 * 291.70884 * 1 2 3 23 23 H 1.08996 * 109.47001 * 51.70895 * 1 2 3 24 24 H 1.08999 * 109.47012 * 171.70509 * 1 2 3 25 25 H 1.09000 * 109.47266 * 239.99619 * 2 1 3 26 26 H 1.09003 * 109.47174 * 120.00178 * 2 1 3 27 27 H 0.97003 * 120.00395 * 180.02562 * 7 6 4 28 28 H 1.07994 * 126.05708 * 179.97438 * 17 15 14 29 29 H 1.09001 * 109.47451 * 35.45729 * 20 19 18 30 30 H 1.09001 * 109.46834 * 155.45480 * 20 19 18 31 31 H 1.08997 * 109.47115 * 304.82337 * 21 20 19 32 32 H 1.09002 * 109.47006 * 64.82195 * 21 20 19 33 33 H 1.08996 * 109.47584 * 184.82160 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1701 2.0533 -1.1824 5 1 2.5042 3.0803 -1.1808 6 6 1.8993 1.4123 -2.3862 7 7 1.0188 0.4383 -2.4281 8 14 2.7877 1.9361 -3.9436 9 1 4.2508 1.7570 -3.7631 10 1 2.3244 1.1024 -5.0819 11 1 2.4947 3.3645 -4.2242 12 6 2.3183 1.9899 1.1644 13 8 2.7894 3.1119 1.1608 14 6 2.0766 1.2990 2.4380 15 6 1.0014 1.4825 3.2941 16 17 -0.3354 2.5707 3.0874 17 6 1.2226 0.6038 4.3584 18 7 2.3411 -0.0347 4.1268 19 7 2.8633 0.3401 3.0148 20 6 4.1132 -0.1772 2.4523 21 6 5.2966 0.5832 3.0541 22 1 -0.3633 0.3801 0.9548 23 1 -0.3633 0.6368 -0.8066 24 1 -0.3633 -1.0169 -0.1483 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 0.8301 -0.0092 -3.2679 28 1 0.5836 0.4747 5.2194 29 1 4.2056 -1.2378 2.6866 30 1 4.1076 -0.0434 1.3705 31 1 5.1606 1.6527 2.8938 32 1 5.3528 0.3803 4.1236 33 1 6.2195 0.2583 2.5738 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598807242.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:34 Heat of formation + Delta-G solvation = 36.176344 kcal Electronic energy + Delta-G solvation = -19633.135182 eV Core-core repulsion = 16528.879901 eV Total energy + Delta-G solvation = -3104.255281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.57432 -40.25247 -37.54418 -37.14328 -35.49694 -33.91986 -31.69290 -31.30512 -30.74780 -27.27055 -25.18932 -24.19130 -23.60086 -22.41336 -20.54342 -19.08805 -18.72170 -17.44547 -16.88964 -16.56482 -16.22628 -15.92655 -15.37569 -15.22273 -14.86823 -14.62383 -14.31450 -13.88776 -13.76778 -13.27704 -13.11489 -12.90964 -12.80966 -12.65672 -12.62498 -12.32365 -12.16262 -12.13169 -11.79724 -11.48289 -10.85662 -10.73519 -10.19414 -9.91640 -9.69560 -8.45255 -5.89890 0.54999 0.86305 1.30751 1.44403 1.49877 1.53244 1.63056 1.95254 2.25415 2.87703 2.95131 3.49347 3.64692 3.92318 4.01183 4.17948 4.27750 4.28827 4.45737 4.65044 4.75797 4.77204 4.83767 5.06588 5.08730 5.23556 5.32960 5.42331 5.66888 5.81643 5.95292 6.40546 6.93724 7.04697 7.30474 7.87741 8.51402 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019717 B = 0.007847 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.719016 B = 3567.288312 C = 4136.372700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.125 3.875 3 N -0.415 5.415 4 C -0.356 4.356 5 H 0.080 0.920 6 C 0.018 3.982 7 N -0.849 5.849 8 Si 0.981 3.019 9 H -0.271 1.271 10 H -0.267 1.267 11 H -0.277 1.277 12 C 0.483 3.517 13 O -0.625 6.625 14 C 0.018 3.982 15 C -0.144 4.144 16 Cl -0.033 7.033 17 C 0.027 3.973 18 N -0.283 5.283 19 N -0.270 5.270 20 C 0.107 3.893 21 C -0.159 4.159 22 H 0.024 0.976 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.280 0.720 28 H 0.226 0.774 29 H 0.135 0.865 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.956 -6.736 7.176 10.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.003 3.997 3 N -0.130 5.130 4 C -0.483 4.483 5 H 0.098 0.902 6 C -0.188 4.188 7 N -0.485 5.485 8 Si 0.804 3.196 9 H -0.196 1.196 10 H -0.191 1.191 11 H -0.202 1.202 12 C 0.270 3.730 13 O -0.513 6.513 14 C -0.113 4.113 15 C -0.182 4.182 16 Cl -0.004 7.004 17 C -0.151 4.151 18 N -0.113 5.113 19 N -0.059 5.059 20 C -0.011 4.011 21 C -0.217 4.217 22 H 0.043 0.957 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.243 0.757 29 H 0.153 0.847 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.829 -7.173 7.339 10.645 hybrid contribution -0.603 1.279 -1.162 1.831 sum 2.226 -5.893 6.177 8.823 Atomic orbital electron populations 1.21834 0.95238 1.01594 0.99797 1.21637 0.95917 0.81802 1.00381 1.43975 1.52298 1.12306 1.04443 1.19565 1.46774 0.98930 0.82982 0.90185 1.25909 0.95116 0.96439 1.01331 1.70281 1.25363 1.23928 1.28931 0.85199 0.79030 0.78437 0.76912 1.19638 1.19102 1.20231 1.16773 0.87779 0.86176 0.82235 1.90623 1.52334 1.21604 1.86691 1.21454 0.95110 0.96945 0.97802 1.21416 0.93979 1.03223 0.99582 1.98307 1.42633 1.62194 1.97290 1.23907 0.95611 0.95409 1.00193 1.73095 1.11210 1.24155 1.02820 1.46053 1.19060 1.26593 1.14200 1.22333 0.78730 1.01523 0.98560 1.22103 0.97462 0.99493 1.02646 0.95678 0.91718 0.92087 0.88904 0.93606 0.90947 0.75749 0.84691 0.89542 0.94549 0.90492 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 9.43 71.98 0.68 -4.71 16 2 C 0.13 5.49 5.23 86.38 0.45 5.94 16 3 N -0.41 -20.98 2.62 -639.85 -1.68 -22.66 16 4 C -0.36 -19.30 9.43 84.10 0.79 -18.51 16 5 H 0.08 4.75 7.30 -2.91 -0.02 4.73 16 6 C 0.02 0.89 4.99 84.95 0.42 1.31 16 7 N -0.85 -40.16 8.25 21.68 0.18 -39.98 16 8 Si 0.98 39.33 29.63 68.60 2.03 41.36 16 9 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 10 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 11 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 12 C 0.48 24.60 6.72 86.51 0.58 25.18 16 13 O -0.62 -36.86 16.69 -4.32 -0.07 -36.93 16 14 C 0.02 0.75 5.02 40.74 0.20 0.95 16 15 C -0.14 -5.51 6.89 22.74 0.16 -5.35 16 16 Cl -0.03 -1.22 29.24 -2.72 -0.08 -1.30 16 17 C 0.03 0.84 12.03 85.21 1.03 1.86 16 18 N -0.28 -9.12 11.89 -57.08 -0.68 -9.79 16 19 N -0.27 -9.48 2.94 -334.61 -0.98 -10.46 16 20 C 0.11 3.02 6.42 86.38 0.55 3.58 16 21 C -0.16 -3.98 10.24 71.98 0.74 -3.24 16 22 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 3.13 6.43 -2.39 -0.02 3.11 16 24 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.09 4.22 5.94 -2.39 -0.01 4.20 16 26 H 0.05 1.82 5.74 -2.39 -0.01 1.81 16 27 H 0.28 12.28 8.31 -92.71 -0.77 11.51 16 28 H 0.23 4.88 8.06 -2.91 -0.02 4.85 16 29 H 0.14 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.09 2.73 7.42 -2.39 -0.02 2.71 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -64.31 297.05 5.46 -58.85 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.13 Total: 13.90 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 5.61 Total: 7.01 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -3.16 Total: -82.90 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.07 Total: -36.93 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -64.31 5.46 -58.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598807242.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.031 kcal (2) G-P(sol) polarization free energy of solvation -64.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds