Wall clock time and date at job start Mon Mar 30 2020 01:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47299 * 2 1 4 4 C 1.46500 * 119.99932 * 274.92334 * 3 2 1 5 5 C 1.50704 * 109.46847 * 263.60840 * 4 3 2 6 6 H 1.08000 * 120.00336 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99990 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00036 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00028 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46829 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47318 * 120.00495 * 9 7 5 12 12 H 1.48504 * 109.46903 * 240.00354 * 9 7 5 13 13 C 1.34777 * 120.00486 * 94.92041 * 3 2 1 14 14 O 1.21583 * 119.99548 * 4.29915 * 13 3 2 15 15 C 1.47662 * 120.00538 * 184.30627 * 13 3 2 16 16 N 1.31828 * 126.46120 * 354.53082 * 15 13 3 17 17 N 1.28465 * 110.13702 * 180.25577 * 16 15 13 18 18 C 1.46500 * 124.93726 * 179.71300 * 17 16 15 19 19 C 1.35648 * 110.12935 * 359.73140 * 17 16 15 20 20 C 1.35461 * 107.13202 * 0.02562 * 19 17 16 21 21 Cl 1.73602 * 127.23567 * 179.97438 * 20 19 17 22 22 H 1.08995 * 109.47135 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46725 * 299.99743 * 1 2 3 24 24 H 1.09000 * 109.47179 * 59.99511 * 1 2 3 25 25 H 1.09003 * 109.46725 * 240.00257 * 2 1 3 26 26 H 1.09000 * 109.47179 * 120.00489 * 2 1 3 27 27 H 1.09000 * 109.47730 * 23.60847 * 4 3 2 28 28 H 1.09000 * 109.47561 * 143.61318 * 4 3 2 29 29 H 0.97003 * 120.00295 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.47185 * 270.02295 * 18 17 16 31 31 H 1.09000 * 109.46845 * 30.02192 * 18 17 16 32 32 H 1.08997 * 109.47455 * 150.01948 * 18 17 16 33 33 H 1.08006 * 126.42919 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1599 2.1080 -1.2641 5 6 3.5868 2.0151 -1.7398 6 1 4.3153 1.4689 -1.1590 7 6 3.9622 2.6266 -2.9172 8 7 3.0750 3.2913 -3.6249 9 14 5.7307 2.5109 -3.5073 10 1 6.5244 1.7126 -2.5388 11 1 5.7666 1.8523 -4.8378 12 1 6.3070 3.8753 -3.6148 13 6 2.3374 1.9832 1.1628 14 8 2.2948 1.3562 2.2037 15 6 2.7386 3.4042 1.1729 16 7 2.9250 4.1731 0.1184 17 7 3.2741 5.3530 0.4876 18 6 3.5692 6.4635 -0.4212 19 6 3.3303 5.4212 1.8412 20 6 2.9924 4.1986 2.3166 21 17 2.8971 3.7075 3.9790 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.4985 1.6697 -2.0114 28 1 1.8947 3.1544 -1.1132 29 1 3.3389 3.7212 -4.4534 30 1 4.6295 6.4548 -0.6733 31 1 2.9785 6.3552 -1.3309 32 1 3.3188 7.4067 0.0643 33 1 3.5949 6.2875 2.4293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599137865.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:28 Heat of formation + Delta-G solvation = 32.341549 kcal Electronic energy + Delta-G solvation = -19296.241702 eV Core-core repulsion = 16191.820132 eV Total energy + Delta-G solvation = -3104.421570 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.52552 -40.39474 -37.44643 -36.83888 -34.65771 -34.23574 -32.14456 -31.26326 -28.93786 -28.17694 -24.99570 -24.82746 -22.66500 -22.36030 -20.17523 -18.67978 -18.12228 -17.61729 -17.17712 -16.93097 -16.27261 -15.79754 -15.46274 -15.03246 -14.45538 -14.38241 -14.22842 -13.81040 -13.59292 -13.42937 -13.33110 -13.08398 -12.77450 -12.68891 -12.66195 -12.17726 -12.01560 -11.77670 -11.64103 -11.23171 -10.83259 -10.43663 -10.15524 -9.72930 -9.35713 -8.07672 -6.15800 0.69631 1.00693 1.08131 1.35904 1.40608 1.50471 1.89338 2.34606 2.46740 2.52958 3.22866 3.57726 3.80757 3.98599 4.23605 4.41249 4.42921 4.49480 4.55764 4.56937 4.76614 4.85042 4.93618 5.04870 5.12611 5.28737 5.47169 5.74441 5.90488 6.01348 6.23633 6.56289 6.84113 7.03661 7.35993 7.50899 8.99172 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014828 B = 0.008958 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.844333 B = 3125.051887 C = 4353.308894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.106 3.894 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.515 4.515 6 H 0.031 0.969 7 C 0.035 3.965 8 N -0.912 5.912 9 Si 0.940 3.060 10 H -0.285 1.285 11 H -0.279 1.279 12 H -0.273 1.273 13 C 0.587 3.413 14 O -0.574 6.574 15 C -0.039 4.039 16 N -0.212 5.212 17 N -0.285 5.285 18 C 0.084 3.916 19 C 0.011 3.989 20 C -0.132 4.132 21 Cl -0.022 7.022 22 H 0.091 0.909 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.013 0.987 28 H 0.061 0.939 29 H 0.264 0.736 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 7.753 7.211 10.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 N -0.321 5.321 4 C 0.126 3.874 5 C -0.554 4.554 6 H 0.049 0.951 7 C -0.165 4.165 8 N -0.552 5.552 9 Si 0.767 3.233 10 H -0.210 1.210 11 H -0.205 1.205 12 H -0.198 1.198 13 C 0.375 3.625 14 O -0.455 6.455 15 C -0.199 4.199 16 N -0.049 5.049 17 N -0.074 5.074 18 C -0.055 4.055 19 C -0.132 4.132 20 C -0.170 4.170 21 Cl 0.006 6.994 22 H 0.110 0.890 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.031 0.969 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.161 0.839 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.816 7.584 6.423 9.971 hybrid contribution 1.016 -0.296 0.301 1.100 sum 0.200 7.288 6.723 9.917 Atomic orbital electron populations 1.22012 0.94407 1.03197 1.01254 1.21490 0.95407 0.82150 1.02585 1.48218 1.61968 1.14424 1.07540 1.19455 0.95694 0.93350 0.78915 1.21359 0.95185 1.32482 1.06402 0.95061 1.25305 0.99965 0.94829 0.96358 1.70013 1.34693 1.35118 1.15337 0.85807 0.81628 0.78006 0.77908 1.20996 1.20451 1.19833 1.17198 0.76981 0.84775 0.83575 1.90668 1.56878 1.65369 1.32565 1.21906 1.11830 0.96096 0.90046 1.74573 1.13879 0.92107 1.24292 1.46214 1.45678 1.09280 1.06205 1.22542 1.03908 0.85394 0.93624 1.23189 1.05846 0.99564 0.84604 1.21003 1.14101 0.94910 0.87008 1.98301 1.97252 1.91680 1.12145 0.88984 0.93709 0.93035 0.90528 0.90763 0.96891 0.92146 0.92726 0.88972 0.89571 0.83946 0.74738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 10.24 71.98 0.74 -4.20 16 2 C 0.11 4.18 6.18 86.38 0.53 4.71 16 3 N -0.59 -27.74 2.47 -829.77 -2.05 -29.79 16 4 C 0.25 12.63 4.79 85.63 0.41 13.04 16 5 C -0.52 -28.19 8.49 25.60 0.22 -27.97 16 6 H 0.03 1.82 7.81 -2.91 -0.02 1.79 16 7 C 0.04 1.88 5.46 84.65 0.46 2.34 16 8 N -0.91 -49.58 13.29 21.45 0.28 -49.29 16 9 Si 0.94 42.70 29.54 68.60 2.03 44.73 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 13 C 0.59 28.14 7.62 86.73 0.66 28.80 16 14 O -0.57 -28.28 15.38 -3.98 -0.06 -28.34 16 15 C -0.04 -1.74 6.81 42.45 0.29 -1.45 16 16 N -0.21 -9.11 7.83 -48.17 -0.38 -9.48 16 17 N -0.28 -9.02 3.72 -368.86 -1.37 -10.40 16 18 C 0.08 1.78 11.32 127.77 1.45 3.23 16 19 C 0.01 0.31 11.49 83.46 0.96 1.27 16 20 C -0.13 -4.78 6.80 22.44 0.15 -4.62 16 21 Cl -0.02 -0.74 28.19 -2.72 -0.08 -0.82 16 22 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.08 2.95 8.11 -2.39 -0.02 2.93 16 26 H 0.07 2.92 7.23 -2.39 -0.02 2.91 16 27 H 0.01 0.70 8.02 -2.39 -0.02 0.68 16 28 H 0.06 3.24 5.31 -2.39 -0.01 3.23 16 29 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.14 1.49 8.13 -2.39 -0.02 1.47 16 33 H 0.24 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -70.13 302.61 5.36 -64.77 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.12 Total: 3.48 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 5.87 Total: 15.15 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -3.52 Total: -98.97 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.06 Total: -28.34 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -70.13 5.36 -64.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599137865.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.109 kcal (2) G-P(sol) polarization free energy of solvation -70.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds