Wall clock time and date at job start Mon Mar 30 2020 01:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47105 * 2 1 4 4 C 1.50700 * 109.46880 * 240.00287 * 2 1 3 5 5 H 1.08004 * 119.99696 * 274.68769 * 4 2 1 6 6 C 1.37879 * 120.00210 * 94.69202 * 4 2 1 7 7 N 1.31516 * 119.99797 * 184.44784 * 6 4 2 8 8 Si 1.86796 * 119.99778 * 4.44880 * 6 4 2 9 9 H 1.48502 * 109.47199 * 94.35304 * 8 6 4 10 10 H 1.48506 * 109.47017 * 214.35080 * 8 6 4 11 11 H 1.48501 * 109.47221 * 334.35139 * 8 6 4 12 12 N 1.46493 * 109.47308 * 120.00091 * 2 1 3 13 13 C 1.46497 * 120.00265 * 60.00109 * 12 2 1 14 14 C 1.34777 * 119.99989 * 239.99713 * 12 2 1 15 15 O 1.21577 * 119.99979 * 2.73098 * 14 12 2 16 16 C 1.47673 * 120.00208 * 182.72590 * 14 12 2 17 17 N 1.31828 * 126.45902 * 355.20049 * 16 14 12 18 18 N 1.28463 * 110.13516 * 180.14557 * 17 16 14 19 19 C 1.46503 * 124.93608 * 179.88133 * 18 17 16 20 20 C 1.35649 * 110.13301 * 359.61855 * 18 17 16 21 21 C 1.35465 * 107.12893 * 0.22997 * 20 18 17 22 22 Cl 1.73594 * 127.23671 * 180.02562 * 21 20 18 23 23 H 1.09007 * 109.47045 * 294.95472 * 1 2 3 24 24 H 1.08993 * 109.47634 * 54.95286 * 1 2 3 25 25 H 1.09009 * 109.47109 * 174.95650 * 1 2 3 26 26 H 0.97002 * 119.99230 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.47412 * 263.88487 * 13 12 2 28 28 H 1.09003 * 109.46959 * 23.88435 * 13 12 2 29 29 H 1.09001 * 109.47692 * 143.88284 * 13 12 2 30 30 H 1.08996 * 109.47493 * 269.69912 * 19 18 17 31 31 H 1.08996 * 109.46761 * 29.69866 * 19 18 17 32 32 H 1.08998 * 109.47043 * 149.69395 * 19 18 17 33 33 H 1.07998 * 126.43628 * 180.23102 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1401 -1.7850 -1.2274 6 6 2.3541 0.0116 -2.3602 7 7 2.7086 -0.6139 -3.4615 8 14 2.2867 1.8780 -2.3265 9 1 3.6346 2.4164 -2.0128 10 1 1.8490 2.3816 -3.6533 11 1 1.3228 2.3199 -1.2868 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0356 2.0832 15 8 3.0460 1.1418 1.9166 16 6 3.3351 -0.7481 3.2577 17 7 3.0728 -1.9912 3.6096 18 7 3.7101 -2.2904 4.6842 19 6 3.6514 -3.5886 5.3604 20 6 4.4497 -1.2315 5.0986 21 6 4.2381 -0.2267 4.2150 22 17 4.9296 1.3652 4.2491 23 1 -0.3633 0.4336 0.9318 24 1 -0.3634 0.5901 -0.8412 25 1 -0.3634 -1.0238 -0.0904 26 1 2.9346 -0.1060 -4.2563 27 1 0.7998 -2.1452 2.0896 28 1 1.4237 -2.5690 0.4773 29 1 2.5066 -2.6089 1.8894 30 1 2.8459 -3.5799 6.0947 31 1 3.4653 -4.3725 4.6264 32 1 4.5994 -3.7795 5.8634 33 1 5.0876 -1.1961 5.9694 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599329158.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:48 Heat of formation + Delta-G solvation = 32.657845 kcal Electronic energy + Delta-G solvation = -18965.669548 eV Core-core repulsion = 15861.261694 eV Total energy + Delta-G solvation = -3104.407854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.70620 -40.49587 -37.53766 -37.11226 -34.88792 -34.21725 -32.35317 -31.44360 -28.35236 -27.62873 -27.26546 -24.52322 -22.52390 -22.14459 -20.24102 -19.20963 -18.33745 -17.69057 -17.37341 -17.10838 -16.16737 -15.77662 -15.54852 -14.92584 -14.75158 -14.40468 -14.15901 -14.05504 -13.68301 -13.53466 -13.43251 -13.11785 -13.02285 -12.78679 -12.67179 -12.37164 -12.08685 -11.77667 -11.56521 -11.23770 -10.83927 -10.77426 -10.31154 -9.84553 -9.32085 -8.36964 -6.40960 0.46904 0.88952 1.00516 1.27451 1.34461 1.44379 1.75622 2.24395 2.28720 2.39943 3.04285 3.37657 3.72634 3.91249 4.34911 4.45340 4.48338 4.51455 4.54396 4.67938 4.74378 4.76988 4.78636 4.85885 5.11352 5.14230 5.34400 5.53450 5.72761 5.83681 6.15828 6.63581 6.64224 6.76745 7.21455 7.32924 8.78425 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022304 B = 0.006342 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.096202 B = 4413.687822 C = 5144.751653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.220 3.780 3 H 0.046 0.954 4 C -0.520 4.520 5 H 0.052 0.948 6 C 0.031 3.969 7 N -0.933 5.933 8 Si 0.924 3.076 9 H -0.284 1.284 10 H -0.272 1.272 11 H -0.249 1.249 12 N -0.583 5.583 13 C 0.089 3.911 14 C 0.573 3.427 15 O -0.576 6.576 16 C -0.026 4.026 17 N -0.249 5.249 18 N -0.274 5.274 19 C 0.075 3.925 20 C 0.026 3.974 21 C -0.136 4.136 22 Cl -0.027 7.027 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.269 0.731 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 -6.700 22.495 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.118 3.882 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.071 0.929 6 C -0.169 4.169 7 N -0.573 5.573 8 Si 0.749 3.251 9 H -0.211 1.211 10 H -0.197 1.197 11 H -0.172 1.172 12 N -0.313 5.313 13 C -0.054 4.054 14 C 0.360 3.640 15 O -0.455 6.455 16 C -0.185 4.185 17 N -0.087 5.087 18 N -0.062 5.062 19 C -0.062 4.062 20 C -0.118 4.118 21 C -0.174 4.174 22 Cl 0.002 6.998 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.152 0.848 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 1.622 -7.034 21.947 23.103 hybrid contribution 0.661 1.639 -0.517 1.841 sum 2.283 -5.395 21.429 22.216 Atomic orbital electron populations 1.22058 0.95637 1.01835 1.00014 1.19269 0.92820 0.93744 0.82348 0.93639 1.21328 1.43797 0.94749 0.95930 0.92940 1.25609 0.93928 1.02315 0.95055 1.69992 1.47216 1.37538 1.02512 0.86084 0.79270 0.81679 0.78099 1.21060 1.19681 1.17240 1.48164 1.48078 1.13486 1.21600 1.21963 1.01682 0.80536 1.01198 1.17479 0.78889 0.85839 0.81763 1.90717 1.61477 1.16651 1.76694 1.21746 1.04557 0.92529 0.99625 1.73822 1.18638 1.13834 1.02419 1.46173 1.29793 1.13654 1.16577 1.22784 1.07536 0.77550 0.98312 1.23209 1.00977 0.85489 1.02163 1.21101 1.04986 0.91163 1.00115 1.98336 1.82607 1.20731 1.98157 0.93640 0.92731 0.92006 0.92196 0.91795 0.91927 0.89143 0.87308 0.87869 0.84782 0.74419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.91 9.10 71.98 0.65 -5.26 16 2 C 0.22 11.18 2.25 44.24 0.10 11.28 16 3 H 0.05 2.53 3.87 -2.39 -0.01 2.52 16 4 C -0.52 -30.04 8.69 25.60 0.22 -29.82 16 5 H 0.05 3.24 6.91 -2.91 -0.02 3.22 16 6 C 0.03 1.82 5.47 84.65 0.46 2.28 16 7 N -0.93 -58.31 13.96 21.45 0.30 -58.01 16 8 Si 0.92 47.43 27.28 68.60 1.87 49.30 16 9 H -0.28 -15.03 7.11 99.48 0.71 -14.32 16 10 H -0.27 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.25 -12.25 6.41 99.48 0.64 -11.62 16 12 N -0.58 -26.71 2.75 -830.43 -2.29 -29.00 16 13 C 0.09 3.30 8.71 127.77 1.11 4.41 16 14 C 0.57 26.48 7.68 86.74 0.67 27.14 16 15 O -0.58 -30.18 15.22 -3.96 -0.06 -30.24 16 16 C -0.03 -0.95 6.83 42.45 0.29 -0.66 16 17 N -0.25 -7.22 8.48 -48.17 -0.41 -7.63 16 18 N -0.27 -5.13 3.72 -368.86 -1.37 -6.50 16 19 C 0.08 0.43 11.32 127.77 1.45 1.88 16 20 C 0.03 0.49 11.49 83.46 0.96 1.45 16 21 C -0.14 -4.14 6.80 22.44 0.15 -3.99 16 22 Cl -0.03 -0.85 28.19 -2.72 -0.08 -0.93 16 23 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 24 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.06 2.48 7.84 -2.38 -0.02 2.46 16 26 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 2.47 6.64 -2.39 -0.02 2.45 16 29 H 0.09 3.14 5.37 -2.39 -0.01 3.13 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.13 -0.17 8.13 -2.39 -0.02 -0.19 16 33 H 0.24 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -80.44 294.39 5.10 -75.34 By element: Atomic # 1 Polarization: -2.14 SS G_CDS: 1.06 Total: -1.08 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 6.07 Total: 8.74 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -3.77 Total: -101.13 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.06 Total: -30.24 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.87 Total: 49.30 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -80.44 5.10 -75.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599329158.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.999 kcal (2) G-P(sol) polarization free energy of solvation -80.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds