Wall clock time and date at job start Mon Mar 30 2020 01:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35635 * 124.93537 * 2 1 4 4 C 1.35468 * 107.13329 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 127.23872 * 179.97438 * 4 3 2 6 6 C 1.41551 * 105.51887 * 0.24082 * 4 3 2 7 7 C 1.47663 * 126.45810 * 179.76326 * 6 4 3 8 8 O 1.21571 * 120.00309 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99780 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00115 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47226 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.46895 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46710 * 180.02562 * 12 11 10 14 14 H 1.07992 * 120.00082 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99610 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00221 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99904 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47265 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47134 * 120.00076 * 17 15 13 20 20 H 1.48499 * 109.47290 * 239.99624 * 17 15 13 21 21 N 1.28467 * 124.93111 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47051 * 89.99788 * 1 2 3 23 23 H 1.08998 * 109.47295 * 210.00234 * 1 2 3 24 24 H 1.09003 * 109.46993 * 329.99684 * 1 2 3 25 25 H 1.07998 * 126.43625 * 0.05137 * 3 2 1 26 26 H 0.97007 * 120.00282 * 0.02562 * 9 7 6 27 27 H 1.09000 * 109.46837 * 299.99839 * 10 9 7 28 28 H 1.09003 * 109.46919 * 60.00084 * 10 9 7 29 29 H 1.08992 * 109.47353 * 300.00044 * 11 10 9 30 30 H 1.09003 * 109.46980 * 60.00272 * 11 10 9 31 31 H 1.09000 * 109.47224 * 300.00024 * 12 11 10 32 32 H 1.09003 * 109.46863 * 60.00472 * 12 11 10 33 33 H 0.97004 * 120.00377 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2417 1.1119 0.0000 4 6 3.5316 0.6978 -0.0006 5 17 4.9543 1.6925 -0.0015 6 6 3.4752 -0.7166 -0.0067 7 6 4.6269 -1.6407 -0.0144 8 8 5.7599 -1.1999 -0.0166 9 7 4.4220 -2.9727 -0.0191 10 6 5.5646 -3.8896 -0.0263 11 6 5.0597 -5.3338 -0.0299 12 6 6.2531 -6.2913 -0.0380 13 6 5.7556 -7.7139 -0.0422 14 1 4.6946 -7.9149 -0.0398 15 6 6.6552 -8.7587 -0.0491 16 7 7.9474 -8.5139 -0.0526 17 14 6.0387 -10.5220 -0.0536 18 1 4.5538 -10.5272 -0.0480 19 1 6.5321 -11.2158 -1.2704 20 1 6.5403 -11.2249 1.1545 21 7 2.2006 -1.0532 -0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.8968 2.1353 0.0008 26 1 3.5180 -3.3245 -0.0178 27 1 6.1668 -3.7126 -0.9175 28 1 6.1723 -3.7197 0.8626 29 1 4.4577 -5.5105 0.8614 30 1 4.4518 -5.5040 -0.9186 31 1 6.8547 -6.1146 -0.9296 32 1 6.8613 -6.1213 0.8504 33 1 8.5803 -9.2489 -0.0578 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599341595.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:50 Heat of formation + Delta-G solvation = 0.078171 kcal Electronic energy + Delta-G solvation = -17547.984535 eV Core-core repulsion = 14442.163921 eV Total energy + Delta-G solvation = -3105.820615 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.75358 -40.47480 -37.53995 -36.95663 -35.21807 -34.41626 -33.00289 -31.70713 -29.22880 -27.93161 -25.33148 -23.61302 -22.63668 -22.28755 -21.05679 -19.03689 -18.47164 -17.61824 -17.47955 -16.80987 -16.58353 -16.39335 -15.63420 -15.31153 -15.19806 -14.59486 -14.21640 -13.91851 -13.74922 -13.49043 -13.46557 -12.82667 -12.76950 -12.64840 -12.55998 -12.34294 -11.80830 -11.68596 -11.57407 -11.24115 -11.01141 -10.55310 -10.45303 -10.12682 -9.83373 -8.18720 -6.30191 0.35604 0.83519 0.94957 1.42175 1.42505 1.55884 1.68721 2.16224 2.21999 2.43321 3.14965 3.31343 3.69422 3.90068 4.16151 4.20956 4.31628 4.44495 4.47260 4.55063 4.74550 4.79707 4.93936 4.97460 5.16436 5.37844 5.52587 5.65497 5.71204 5.84833 6.22971 6.39006 6.70922 6.87123 7.12123 7.39256 8.93666 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030564 B = 0.003201 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.902128 B = 8744.533135 C = 9629.381186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.268 5.268 3 C 0.025 3.975 4 C -0.134 4.134 5 Cl -0.023 7.023 6 C -0.031 4.031 7 C 0.589 3.411 8 O -0.558 6.558 9 N -0.703 5.703 10 C 0.130 3.870 11 C -0.102 4.102 12 C 0.024 3.976 13 C -0.540 4.540 14 H 0.066 0.934 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.279 1.279 20 H -0.280 1.280 21 N -0.256 5.256 22 H 0.107 0.893 23 H 0.104 0.896 24 H 0.136 0.864 25 H 0.239 0.761 26 H 0.414 0.586 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.066 0.934 31 H -0.006 1.006 32 H -0.006 1.006 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.333 22.283 0.188 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.057 5.057 3 C -0.120 4.120 4 C -0.171 4.171 5 Cl 0.006 6.994 6 C -0.190 4.190 7 C 0.374 3.626 8 O -0.435 6.435 9 N -0.355 5.355 10 C 0.007 3.993 11 C -0.140 4.140 12 C -0.014 4.014 13 C -0.578 4.578 14 H 0.084 0.916 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.182 1.182 19 H -0.205 1.205 20 H -0.205 1.205 21 N -0.094 5.094 22 H 0.125 0.875 23 H 0.123 0.877 24 H 0.154 0.846 25 H 0.255 0.745 26 H 0.251 0.749 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.012 0.988 32 H 0.012 0.988 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.105 21.648 0.191 29.544 hybrid contribution 0.744 -0.440 -0.024 0.865 sum -19.361 21.207 0.167 28.716 Atomic orbital electron populations 1.22811 0.68835 1.07940 1.06714 1.45981 1.09650 1.01901 1.48173 1.23257 0.87665 0.95885 1.05168 1.21112 0.90562 0.90512 1.14952 1.98355 1.36835 1.66947 1.97286 1.21664 0.91348 0.92981 1.13013 1.17213 0.86881 0.82022 0.76455 1.90804 1.23693 1.77598 1.51383 1.45843 1.11142 1.04896 1.73599 1.21330 0.87984 0.88794 1.01196 1.21603 0.99077 0.91217 1.02055 1.18947 0.93472 0.93712 0.95230 1.21703 0.93498 0.92251 1.50393 0.91609 1.26029 0.94986 1.04349 0.94777 1.70121 1.02352 1.33319 1.51732 0.85349 0.79018 0.78716 0.77644 1.18234 1.20525 1.20533 1.73583 1.01505 1.15378 1.18906 0.87490 0.87748 0.84606 0.74476 0.74896 0.92635 0.92636 0.91481 0.91495 0.98772 0.98766 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 11.32 127.77 1.45 1.60 16 2 N -0.27 -3.68 3.72 -368.86 -1.37 -5.06 16 3 C 0.02 0.33 11.49 83.46 0.96 1.29 16 4 C -0.13 -3.18 6.80 22.45 0.15 -3.03 16 5 Cl -0.02 -0.58 28.17 -2.72 -0.08 -0.66 16 6 C -0.03 -0.88 7.13 42.45 0.30 -0.57 16 7 C 0.59 20.60 7.82 86.73 0.68 21.28 16 8 O -0.56 -23.15 15.87 -3.94 -0.06 -23.21 16 9 N -0.70 -23.10 5.55 -466.15 -2.59 -25.68 16 10 C 0.13 4.97 5.67 86.38 0.49 5.46 16 11 C -0.10 -4.14 5.27 30.60 0.16 -3.98 16 12 C 0.02 1.29 4.97 29.85 0.15 1.43 16 13 C -0.54 -30.76 9.11 25.60 0.23 -30.52 16 14 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 15 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 16 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 17 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 18 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 N -0.26 -5.78 11.66 -48.17 -0.56 -6.34 16 22 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 23 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 24 H 0.14 -0.67 8.13 -2.39 -0.02 -0.69 16 25 H 0.24 0.75 8.06 -2.91 -0.02 0.73 16 26 H 0.41 11.65 8.19 -92.70 -0.76 10.89 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 31 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -78.20 309.74 3.06 -75.14 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 0.37 Total: 3.74 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 5.03 Total: -6.81 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -4.24 Total: -94.63 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.06 Total: -23.21 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -78.20 3.06 -75.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599341595.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.220 kcal (2) G-P(sol) polarization free energy of solvation -78.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds