Wall clock time and date at job start Mon Mar 30 2020 01:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21574 * 120.00034 * 359.97438 * 14 13 3 16 16 C 1.47668 * 119.99920 * 179.97438 * 14 13 3 17 17 N 1.31819 * 126.46156 * 359.69374 * 16 14 13 18 18 N 1.28472 * 110.13463 * 179.87793 * 17 16 14 19 19 C 1.46504 * 124.93502 * 180.12003 * 18 17 16 20 20 C 1.35644 * 110.13135 * 0.39220 * 18 17 16 21 21 C 1.35462 * 107.12982 * 359.76231 * 20 18 17 22 22 Cl 1.73599 * 127.23530 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 29 29 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 30 30 H 1.08993 * 109.47065 * 270.31288 * 19 18 17 31 31 H 1.09001 * 109.47113 * 30.31252 * 19 18 17 32 32 H 1.09003 * 109.46941 * 150.31041 * 19 18 17 33 33 H 1.08001 * 126.43415 * 179.76943 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3411 2.6326 0.4319 16 6 0.0443 3.3240 2.6291 17 7 0.7785 3.4275 3.7189 18 7 0.1324 4.0644 4.6286 19 6 0.6454 4.3647 5.9676 20 6 -1.0960 4.4133 4.1711 21 6 -1.1917 3.9591 2.8985 22 17 -2.5458 4.1211 1.8244 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8292 -0.0609 -2.9500 29 1 2.2719 2.1231 1.9979 30 1 0.3914 3.5496 6.6452 31 1 1.7288 4.4773 5.9248 32 1 0.1979 5.2906 6.3290 33 1 -1.8551 4.9521 4.7187 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599761262.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:50 Heat of formation + Delta-G solvation = 35.378100 kcal Electronic energy + Delta-G solvation = -18682.034036 eV Core-core repulsion = 15577.744141 eV Total energy + Delta-G solvation = -3104.289895 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.60049 -38.64948 -36.32193 -34.94899 -33.42172 -32.25922 -30.95769 -30.41425 -27.73960 -26.62619 -23.43231 -22.37477 -21.50546 -20.04436 -19.15849 -17.93653 -16.70955 -16.39707 -15.67457 -15.17818 -14.59060 -14.36249 -14.19754 -13.77651 -13.27234 -13.06524 -12.87191 -12.59467 -11.88936 -11.72363 -11.45023 -11.39376 -11.17929 -10.93076 -10.76211 -10.43664 -10.26278 -10.09085 -9.55862 -9.24306 -9.10018 -8.96925 -8.70290 -8.42836 -7.71691 -6.05731 -4.14516 1.68961 1.98306 2.03865 2.77293 3.30337 3.35196 3.36795 4.05566 4.07383 4.34824 4.43108 4.63265 4.79894 5.04456 5.12096 5.25300 5.30539 5.59213 6.14795 6.48448 6.56289 6.58396 6.75682 7.14414 7.28453 7.45003 7.52473 7.68552 7.75191 7.87945 7.99604 8.24953 8.76592 8.84841 9.19902 9.52268 10.99686 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.005333 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.312308 B = 5248.964586 C = 6058.353450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.692 5.692 14 C 0.582 3.418 15 O -0.525 6.525 16 C 0.013 3.987 17 N -0.251 5.251 18 N -0.288 5.288 19 C 0.091 3.909 20 C -0.011 4.011 21 C -0.105 4.105 22 Cl -0.012 7.012 23 H 0.039 0.961 24 H 0.022 0.978 25 H 0.051 0.949 26 H 0.031 0.969 27 H 0.100 0.900 28 H 0.264 0.736 29 H 0.393 0.607 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 7.715 16.018 19.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.339 5.339 14 C 0.363 3.637 15 O -0.400 6.400 16 C -0.149 4.149 17 N -0.086 5.086 18 N -0.076 5.076 19 C -0.049 4.049 20 C -0.155 4.155 21 C -0.142 4.142 22 Cl 0.016 6.984 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.226 0.774 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.934 7.334 15.598 18.579 hybrid contribution 0.372 0.268 0.075 0.465 sum -6.561 7.602 15.673 18.614 Atomic orbital electron populations 1.21844 0.98261 0.98050 1.01355 1.21934 0.92689 0.99696 1.02273 1.18841 0.94253 0.89235 0.80766 0.93039 1.21197 0.90692 1.38957 1.06256 0.92120 1.24867 0.98510 0.94852 0.95374 1.69884 1.35144 1.37639 1.09330 0.86522 0.84998 0.78269 0.77376 1.20200 1.21164 1.20233 1.46386 1.13998 1.54821 1.18724 1.16797 0.83373 0.79251 0.84257 1.90806 1.51525 1.59687 1.37995 1.22502 0.92307 1.04924 0.95168 1.73688 1.23587 1.13780 0.97564 1.45339 1.10482 1.39466 1.12362 1.22178 1.02435 1.02733 0.77596 1.22535 0.90824 1.06882 0.95259 1.20865 0.92639 1.07878 0.92854 1.98352 1.40421 1.96631 1.62958 0.94240 0.95894 0.93015 0.95045 0.88231 0.92552 0.77358 0.89633 0.88245 0.88619 0.79522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.51 37.16 0.32 -2.88 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.33 16 3 C 0.27 7.03 2.24 -69.08 -0.15 6.87 16 4 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 5 C -0.53 -14.41 8.73 -34.44 -0.30 -14.71 16 6 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -25.01 11.29 55.43 0.63 -24.39 16 9 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.69 -15.56 5.02 -55.94 -0.28 -15.85 16 14 C 0.58 12.74 6.39 -12.41 -0.08 12.66 16 15 O -0.52 -12.72 13.01 5.30 0.07 -12.65 16 16 C 0.01 0.24 7.13 -82.76 -0.59 -0.35 16 17 N -0.25 -3.97 11.66 33.42 0.39 -3.58 16 18 N -0.29 -3.34 3.72 -67.94 -0.25 -3.59 16 19 C 0.09 0.52 11.32 59.85 0.68 1.20 16 20 C -0.01 -0.13 11.49 -16.86 -0.19 -0.32 16 21 C -0.10 -1.65 6.80 -39.31 -0.27 -1.91 16 22 Cl -0.01 -0.19 28.17 -51.86 -1.46 -1.65 16 23 H 0.04 0.90 5.65 -51.93 -0.29 0.61 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 1.26 7.84 -51.93 -0.41 0.85 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.10 2.72 5.95 -51.93 -0.31 2.42 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.39 8.17 8.26 -40.82 -0.34 7.84 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.26 8.13 -51.93 -0.42 -0.16 16 33 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 297.17 15.07 4.48 4.48 Total: -1.00 -32.40 297.17 -6.10 -38.50 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.82 Total: 3.86 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -0.83 Total: -1.04 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.48 Total: -47.40 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.07 Total: -12.65 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.46 Total: -1.65 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.40 -6.10 -38.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599761262.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.876 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds