Wall clock time and date at job start Mon Mar 30 2020 01:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21574 * 120.00034 * 359.97438 * 14 13 3 16 16 C 1.47668 * 119.99920 * 179.97438 * 14 13 3 17 17 N 1.31819 * 126.46156 * 359.69374 * 16 14 13 18 18 N 1.28472 * 110.13463 * 179.87793 * 17 16 14 19 19 C 1.46504 * 124.93502 * 180.12003 * 18 17 16 20 20 C 1.35644 * 110.13135 * 0.39220 * 18 17 16 21 21 C 1.35462 * 107.12982 * 359.76231 * 20 18 17 22 22 Cl 1.73599 * 127.23530 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 29 29 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 30 30 H 1.08993 * 109.47065 * 270.31288 * 19 18 17 31 31 H 1.09001 * 109.47113 * 30.31252 * 19 18 17 32 32 H 1.09003 * 109.46941 * 150.31041 * 19 18 17 33 33 H 1.08001 * 126.43415 * 179.76943 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3411 2.6326 0.4319 16 6 0.0443 3.3240 2.6291 17 7 0.7785 3.4275 3.7189 18 7 0.1324 4.0644 4.6286 19 6 0.6454 4.3647 5.9676 20 6 -1.0960 4.4133 4.1711 21 6 -1.1917 3.9591 2.8985 22 17 -2.5458 4.1211 1.8244 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.8292 -0.0609 -2.9500 29 1 2.2719 2.1231 1.9979 30 1 0.3914 3.5496 6.6452 31 1 1.7288 4.4773 5.9248 32 1 0.1979 5.2906 6.3290 33 1 -1.8551 4.9521 4.7187 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599761262.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:50 Heat of formation + Delta-G solvation = 12.447791 kcal Electronic energy + Delta-G solvation = -18683.028369 eV Core-core repulsion = 15577.744141 eV Total energy + Delta-G solvation = -3105.284228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.67386 -40.40663 -37.48746 -36.87684 -34.52818 -34.11598 -32.73319 -31.61680 -29.24471 -28.05611 -25.21272 -23.94032 -22.52378 -21.76591 -20.93915 -19.33977 -18.16662 -17.41946 -17.30364 -17.08639 -16.13797 -15.97624 -15.55300 -15.03099 -14.70319 -14.49851 -14.05251 -13.65448 -13.47315 -13.39785 -13.15417 -12.90614 -12.77456 -12.64409 -12.55033 -12.17933 -12.05446 -11.63946 -11.56556 -11.05490 -10.81918 -10.50925 -10.33028 -9.83275 -9.57867 -8.14276 -6.31603 0.50388 0.90199 1.01172 1.45274 1.47640 1.55428 1.78858 2.36520 2.45946 2.62451 3.14714 3.45663 3.77285 4.04980 4.36873 4.45946 4.50619 4.51651 4.58802 4.74514 4.76215 4.89443 5.09335 5.27365 5.45516 5.56132 5.61899 5.72180 5.80905 5.93306 6.17270 6.65978 6.74261 7.01927 7.33138 7.52566 8.91132 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.005333 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.312308 B = 5248.964586 C = 6058.353450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C 0.279 3.721 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.693 5.693 14 C 0.579 3.421 15 O -0.558 6.558 16 C -0.027 4.027 17 N -0.262 5.262 18 N -0.272 5.272 19 C 0.075 3.925 20 C 0.023 3.977 21 C -0.134 4.134 22 Cl -0.024 7.024 23 H 0.038 0.962 24 H 0.046 0.954 25 H 0.030 0.970 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.266 0.734 29 H 0.402 0.598 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.137 0.863 33 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 8.678 19.108 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.341 5.341 14 C 0.363 3.637 15 O -0.436 6.436 16 C -0.187 4.187 17 N -0.100 5.100 18 N -0.060 5.060 19 C -0.062 4.062 20 C -0.121 4.121 21 C -0.172 4.172 22 Cl 0.005 6.995 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.236 0.764 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.155 0.845 33 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -6.550 8.305 18.732 21.512 hybrid contribution 0.219 0.049 -0.734 0.768 sum -6.331 8.354 17.998 20.828 Atomic orbital electron populations 1.21668 0.96899 0.99177 1.00255 1.21777 0.93803 0.98964 1.01268 1.18450 0.93812 0.89260 0.80869 0.97860 1.21505 0.91306 1.39249 1.06792 0.91477 1.25746 1.03366 0.94250 0.94862 1.70033 1.37131 1.38160 1.09790 0.85422 0.79018 0.78407 0.77618 1.18975 1.20891 1.19779 1.46160 1.14851 1.55315 1.17785 1.17262 0.82437 0.78500 0.85461 1.90769 1.52238 1.60794 1.39766 1.21909 0.94376 1.07702 0.94712 1.73609 1.24024 1.14591 0.97739 1.45995 1.10235 1.36739 1.13067 1.22780 1.03069 1.05561 0.74766 1.23234 0.91091 1.04327 0.93480 1.21105 0.91874 1.09614 0.94593 1.98339 1.40652 1.96729 1.63798 0.94269 0.93480 0.95124 0.94377 0.90596 0.92495 0.76402 0.87542 0.88001 0.84497 0.74329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.85 8.51 71.98 0.61 -5.24 16 2 C -0.12 -6.17 5.45 30.59 0.17 -6.00 16 3 C 0.28 15.13 2.24 44.24 0.10 15.22 16 4 H 0.00 0.22 7.58 -2.39 -0.02 0.20 16 5 C -0.55 -30.42 8.73 25.60 0.22 -30.20 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 7 C 0.02 1.00 5.29 84.66 0.45 1.44 16 8 N -0.91 -53.19 11.29 21.45 0.24 -52.95 16 9 Si 0.97 43.07 29.54 68.60 2.03 45.09 16 10 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 N -0.69 -32.24 5.02 -449.15 -2.25 -34.49 16 14 C 0.58 26.24 6.39 86.73 0.55 26.79 16 15 O -0.56 -28.40 13.01 -3.95 -0.05 -28.45 16 16 C -0.03 -1.00 7.13 42.45 0.30 -0.70 16 17 N -0.26 -7.88 11.66 -48.17 -0.56 -8.45 16 18 N -0.27 -5.31 3.72 -368.86 -1.37 -6.68 16 19 C 0.08 0.50 11.32 127.77 1.45 1.95 16 20 C 0.02 0.44 11.49 83.46 0.96 1.40 16 21 C -0.13 -4.04 6.80 22.44 0.15 -3.89 16 22 Cl -0.02 -0.74 28.17 -2.72 -0.08 -0.81 16 23 H 0.04 1.84 5.65 -2.39 -0.01 1.83 16 24 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 25 H 0.03 1.55 7.84 -2.38 -0.02 1.53 16 26 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.08 4.31 5.95 -2.39 -0.01 4.30 16 28 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 29 H 0.40 17.05 8.26 -92.71 -0.77 16.28 16 30 H 0.11 0.38 8.14 -2.39 -0.02 0.37 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.14 -0.13 8.13 -2.39 -0.02 -0.15 16 33 H 0.24 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -74.48 297.17 3.30 -71.18 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.38 Total: 14.76 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 4.96 Total: 0.78 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -3.94 Total: -102.56 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.05 Total: -28.45 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.81 kcal Total: -74.48 3.30 -71.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599761262.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.631 kcal (2) G-P(sol) polarization free energy of solvation -74.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds