Wall clock time and date at job start Mon Mar 30 2020 01:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21575 * 120.00186 * 0.02562 * 14 13 3 16 16 C 1.47670 * 120.00054 * 180.02562 * 14 13 3 17 17 N 1.31830 * 126.45956 * 359.69157 * 16 14 13 18 18 N 1.28473 * 110.13349 * 179.87869 * 17 16 14 19 19 C 1.46503 * 124.93036 * 180.12159 * 18 17 16 20 20 C 1.35635 * 110.13192 * 0.39072 * 18 17 16 21 21 C 1.35463 * 107.13358 * 359.76404 * 20 18 17 22 22 Cl 1.73601 * 127.24053 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 29 29 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 30 30 H 1.09004 * 109.46840 * 270.30811 * 19 18 17 31 31 H 1.09000 * 109.47095 * 30.31011 * 19 18 17 32 32 H 1.08999 * 109.46794 * 150.30983 * 19 18 17 33 33 H 1.08003 * 126.43412 * 179.76533 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3411 2.6326 -0.4318 16 6 0.0443 3.3242 -2.6288 17 7 0.7829 3.4377 -3.7149 18 7 0.1334 4.0670 -4.6275 19 6 0.6477 4.3701 -5.9654 20 6 -1.0952 4.4150 -4.1703 21 6 -1.1916 3.9593 -2.8983 22 17 -2.5459 4.1208 -1.8243 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 5.8770 0.4816 2.1128 29 1 2.2720 2.1232 -1.9977 30 1 1.1564 5.3340 -5.9492 31 1 1.3498 3.5937 -6.2693 32 1 -0.1806 4.4082 -6.6729 33 1 -1.8542 4.9542 -4.7177 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599761263.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:52 Heat of formation + Delta-G solvation = 43.433848 kcal Electronic energy + Delta-G solvation = -18764.135019 eV Core-core repulsion = 15660.194448 eV Total energy + Delta-G solvation = -3103.940572 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.67541 -38.88841 -36.40422 -35.23079 -33.49830 -32.29136 -31.45576 -30.56843 -27.95472 -27.02537 -23.35187 -22.37450 -21.58167 -20.42811 -19.41704 -18.03987 -16.88145 -16.46522 -15.88231 -15.54163 -14.69085 -14.59273 -14.22718 -13.78679 -13.38967 -13.22804 -13.01223 -12.82798 -12.25195 -11.83287 -11.79479 -11.71256 -11.48946 -11.02174 -10.83519 -10.58167 -10.48458 -9.85900 -9.55004 -9.31944 -9.21161 -9.14146 -8.78140 -8.69017 -7.97290 -6.15142 -4.17117 1.61868 1.91431 1.94331 2.70188 3.28772 3.40407 3.46425 3.89013 3.92490 4.30743 4.37390 4.56287 4.77598 4.98270 5.07459 5.18523 5.22187 5.47270 6.03035 6.05946 6.10781 6.26560 6.51550 6.74140 6.77738 6.91611 7.04664 7.34260 7.36237 7.57410 7.72585 8.24544 8.61090 8.82640 8.99510 9.45791 10.97004 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.005640 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.205664 B = 4963.423886 C = 5725.573820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.242 3.758 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.893 5.893 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.259 1.259 13 N -0.684 5.684 14 C 0.585 3.415 15 O -0.527 6.527 16 C 0.011 3.989 17 N -0.247 5.247 18 N -0.286 5.286 19 C 0.090 3.910 20 C -0.010 4.010 21 C -0.104 4.104 22 Cl -0.012 7.012 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.031 0.969 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.267 0.733 29 H 0.400 0.600 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.690 6.670 -14.896 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.183 1.183 13 N -0.332 5.332 14 C 0.367 3.633 15 O -0.402 6.402 16 C -0.151 4.151 17 N -0.083 5.083 18 N -0.074 5.074 19 C -0.050 4.050 20 C -0.154 4.154 21 C -0.142 4.142 22 Cl 0.016 6.984 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.234 0.766 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.074 6.353 -14.564 19.956 hybrid contribution -0.956 -0.179 0.582 1.133 sum -13.030 6.174 -13.982 20.084 Atomic orbital electron populations 1.21882 0.96840 0.99057 1.02391 1.22285 0.94447 0.99845 1.01110 1.19205 0.95719 0.88548 0.82608 0.93051 1.21052 0.88569 1.39628 1.07830 0.90147 1.24820 0.94857 0.95155 0.97639 1.69868 1.08695 1.44662 1.29804 0.86913 0.81071 0.79973 0.80858 1.20245 1.22223 1.18308 1.46045 1.14243 1.54784 1.18160 1.16795 0.83102 0.79003 0.84385 1.90802 1.51606 1.59739 1.38065 1.22342 0.92258 1.05307 0.95237 1.73707 1.23247 1.13773 0.97552 1.45355 1.10295 1.39466 1.12313 1.22207 1.01654 1.03789 0.77376 1.22550 0.90933 1.06613 0.95264 1.20847 0.92625 1.07755 0.92955 1.98353 1.40447 1.96632 1.62932 0.92887 0.92728 0.94992 0.92734 0.92276 0.92345 0.76570 0.89494 0.88156 0.88560 0.79438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.14 -3.17 5.11 -26.74 -0.14 -3.31 16 3 C 0.24 5.95 1.83 -69.09 -0.13 5.82 16 4 H 0.05 1.37 6.63 -51.93 -0.34 1.03 16 5 C -0.53 -14.75 9.31 -34.44 -0.32 -15.07 16 6 H 0.08 2.35 7.98 -52.49 -0.42 1.93 16 7 C 0.08 2.24 5.45 -17.82 -0.10 2.15 16 8 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 9 Si 0.88 22.08 24.41 -169.99 -4.15 17.93 16 10 H -0.28 -6.68 6.83 56.52 0.39 -6.29 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 12 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 13 N -0.68 -14.74 5.02 -55.94 -0.28 -15.02 16 14 C 0.59 12.14 6.39 -12.41 -0.08 12.06 16 15 O -0.53 -11.98 13.01 5.30 0.07 -11.92 16 16 C 0.01 0.18 7.13 -82.76 -0.59 -0.40 16 17 N -0.25 -3.78 11.66 33.42 0.39 -3.39 16 18 N -0.29 -3.17 3.72 -67.94 -0.25 -3.42 16 19 C 0.09 0.49 11.32 59.85 0.68 1.16 16 20 C -0.01 -0.11 11.49 -16.86 -0.19 -0.30 16 21 C -0.10 -1.56 6.80 -39.31 -0.27 -1.82 16 22 Cl -0.01 -0.18 28.17 -51.86 -1.46 -1.64 16 23 H 0.05 1.11 5.65 -51.93 -0.29 0.81 16 24 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 1.30 3.22 -51.93 -0.17 1.13 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.40 8.09 8.26 -40.82 -0.34 7.75 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.22 8.13 -51.93 -0.42 -0.20 16 33 H 0.19 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 290.40 15.07 4.38 4.38 Total: -1.00 -33.53 290.40 -5.04 -38.57 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.69 Total: 2.99 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.82 Total: -2.42 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.63 Total: -47.88 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.07 Total: -11.92 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.15 Total: 17.93 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.46 Total: -1.64 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.53 -5.04 -38.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599761263.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.003 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds