Wall clock time and date at job start Mon Mar 30 2020 01:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21575 * 120.00186 * 0.02562 * 14 13 3 16 16 C 1.47670 * 120.00054 * 180.02562 * 14 13 3 17 17 N 1.31830 * 126.45956 * 359.69157 * 16 14 13 18 18 N 1.28473 * 110.13349 * 179.87869 * 17 16 14 19 19 C 1.46503 * 124.93036 * 180.12159 * 18 17 16 20 20 C 1.35635 * 110.13192 * 0.39072 * 18 17 16 21 21 C 1.35463 * 107.13358 * 359.76404 * 20 18 17 22 22 Cl 1.73601 * 127.24053 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 29 29 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 30 30 H 1.09004 * 109.46840 * 270.30811 * 19 18 17 31 31 H 1.09000 * 109.47095 * 30.31011 * 19 18 17 32 32 H 1.08999 * 109.46794 * 150.30983 * 19 18 17 33 33 H 1.08003 * 126.43412 * 179.76533 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3411 2.6326 -0.4318 16 6 0.0443 3.3242 -2.6288 17 7 0.7829 3.4377 -3.7149 18 7 0.1334 4.0670 -4.6275 19 6 0.6477 4.3701 -5.9654 20 6 -1.0952 4.4150 -4.1703 21 6 -1.1916 3.9593 -2.8983 22 17 -2.5459 4.1208 -1.8243 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 5.8770 0.4816 2.1128 29 1 2.2720 2.1232 -1.9977 30 1 1.1564 5.3340 -5.9492 31 1 1.3498 3.5937 -6.2693 32 1 -0.1806 4.4082 -6.6729 33 1 -1.8542 4.9542 -4.7177 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599761263.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:52 Heat of formation + Delta-G solvation = 18.222189 kcal Electronic energy + Delta-G solvation = -18765.228279 eV Core-core repulsion = 15660.194448 eV Total energy + Delta-G solvation = -3105.033831 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.69303 -40.55194 -37.51076 -37.04888 -34.55833 -34.26937 -33.10835 -31.64183 -29.60529 -28.21459 -24.94544 -24.01967 -22.54807 -22.05212 -21.06402 -19.45094 -18.39449 -17.53910 -17.39670 -17.29819 -16.25652 -16.03467 -15.56075 -15.08893 -14.98257 -14.66352 -14.18136 -13.87924 -13.67130 -13.55583 -13.47243 -12.95679 -12.78323 -12.75622 -12.55872 -12.39577 -11.84779 -11.65798 -11.37753 -11.23860 -10.88635 -10.82438 -10.35356 -9.87307 -9.70051 -8.37225 -6.43094 0.46879 0.89033 0.99766 1.28638 1.36537 1.47383 1.76603 2.27572 2.38122 2.43469 2.98423 3.42133 3.75242 3.98983 4.24699 4.32961 4.35337 4.44825 4.45582 4.51755 4.74230 4.80028 4.92270 5.00905 5.12835 5.24687 5.40464 5.52648 5.63259 5.71499 6.14142 6.56827 6.63579 6.91134 7.18758 7.38960 8.78211 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.005640 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.205664 B = 4963.423886 C = 5725.573820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.136 4.136 3 C 0.250 3.750 4 H 0.028 0.972 5 C -0.535 4.535 6 H 0.052 0.948 7 C 0.031 3.969 8 N -0.934 5.934 9 Si 0.937 3.063 10 H -0.258 1.258 11 H -0.292 1.292 12 H -0.258 1.258 13 N -0.689 5.689 14 C 0.585 3.415 15 O -0.553 6.553 16 C -0.028 4.028 17 N -0.263 5.263 18 N -0.271 5.271 19 C 0.075 3.925 20 C 0.023 3.977 21 C -0.132 4.132 22 Cl -0.021 7.021 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.271 0.729 29 H 0.404 0.596 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.138 0.862 33 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.529 6.965 -16.948 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.174 4.174 3 C 0.146 3.854 4 H 0.045 0.955 5 C -0.573 4.573 6 H 0.070 0.930 7 C -0.169 4.169 8 N -0.573 5.573 9 Si 0.764 3.236 10 H -0.183 1.183 11 H -0.219 1.219 12 H -0.183 1.183 13 N -0.337 5.337 14 C 0.370 3.630 15 O -0.430 6.430 16 C -0.188 4.188 17 N -0.101 5.101 18 N -0.060 5.060 19 C -0.062 4.062 20 C -0.121 4.121 21 C -0.170 4.170 22 Cl 0.007 6.993 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.239 0.761 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.156 0.844 33 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -13.911 6.650 -16.653 22.695 hybrid contribution -0.344 -0.139 1.010 1.076 sum -14.255 6.511 -15.643 22.142 Atomic orbital electron populations 1.21755 0.95078 1.00635 1.01599 1.22195 0.95941 0.98237 1.01053 1.18864 0.93376 0.89791 0.83365 0.95468 1.21250 0.90230 1.38760 1.07029 0.92988 1.25547 0.95801 0.95746 0.99799 1.69976 1.10313 1.46116 1.30872 0.86021 0.79387 0.80030 0.78176 1.18324 1.21885 1.18256 1.45892 1.15136 1.55455 1.17254 1.17185 0.82116 0.78226 0.85517 1.90765 1.52111 1.60629 1.39526 1.21843 0.94210 1.07890 0.94838 1.73640 1.23822 1.14772 0.97869 1.45986 1.10100 1.36947 1.12957 1.22782 1.03690 1.04639 0.75115 1.23251 0.91130 1.04110 0.93632 1.21075 0.91904 1.09355 0.94620 1.98341 1.40560 1.96719 1.63662 0.93221 0.94004 0.92115 0.93422 0.91571 0.92023 0.76073 0.87716 0.88018 0.84360 0.74343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.44 8.51 71.98 0.61 -4.83 16 2 C -0.14 -6.15 5.11 30.59 0.16 -6.00 16 3 C 0.25 12.52 1.83 44.24 0.08 12.60 16 4 H 0.03 1.50 6.63 -2.39 -0.02 1.49 16 5 C -0.53 -30.47 9.31 25.60 0.24 -30.23 16 6 H 0.05 3.18 7.98 -2.91 -0.02 3.16 16 7 C 0.03 1.79 5.45 84.66 0.46 2.25 16 8 N -0.93 -57.30 13.96 21.45 0.30 -57.00 16 9 Si 0.94 45.78 24.41 68.60 1.67 47.45 16 10 H -0.26 -11.78 6.83 99.48 0.68 -11.11 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 12 H -0.26 -12.51 6.53 99.48 0.65 -11.86 16 13 N -0.69 -30.40 5.02 -449.16 -2.25 -32.65 16 14 C 0.58 24.66 6.39 86.74 0.55 25.22 16 15 O -0.55 -25.64 13.01 -3.95 -0.05 -25.69 16 16 C -0.03 -0.98 7.13 42.45 0.30 -0.68 16 17 N -0.26 -7.69 11.66 -48.17 -0.56 -8.25 16 18 N -0.27 -5.10 3.72 -368.85 -1.37 -6.47 16 19 C 0.08 0.49 11.32 127.77 1.45 1.93 16 20 C 0.02 0.41 11.49 83.46 0.96 1.37 16 21 C -0.13 -3.72 6.80 22.44 0.15 -3.57 16 22 Cl -0.02 -0.61 28.17 -2.72 -0.08 -0.69 16 23 H 0.05 2.04 5.65 -2.39 -0.01 2.03 16 24 H 0.04 1.79 7.84 -2.39 -0.02 1.77 16 25 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.05 2.22 3.22 -2.39 -0.01 2.21 16 27 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.40 16.89 8.26 -92.71 -0.77 16.12 16 30 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.14 -0.19 8.13 -2.39 -0.02 -0.21 16 33 H 0.24 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -75.53 290.40 2.92 -72.61 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.30 Total: 12.64 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 4.96 Total: -1.94 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -3.89 Total: -104.38 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.45 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -75.53 2.92 -72.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599761263.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.832 kcal (2) G-P(sol) polarization free energy of solvation -75.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds