Wall clock time and date at job start Mon Mar 30 2020 00:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86806 * 119.99909 * 2 1 4 4 H 1.48502 * 109.46583 * 93.98458 * 3 2 1 5 5 H 1.48504 * 109.47104 * 213.98427 * 3 2 1 6 6 H 1.48499 * 109.46786 * 333.98526 * 3 2 1 7 7 C 1.38980 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99820 * 348.94810 * 7 2 1 9 9 N 1.36982 * 120.00215 * 168.95698 * 7 2 1 10 10 C 1.34774 * 120.00259 * 119.75310 * 9 7 2 11 11 O 1.21630 * 119.99984 * 184.92012 * 10 9 7 12 12 C 1.47354 * 119.99960 * 4.91428 * 10 9 7 13 13 C 1.41322 * 126.42241 * 352.55556 * 12 10 9 14 14 N 1.30438 * 108.02770 * 179.97438 * 13 12 10 15 15 N 1.39927 * 108.91902 * 359.97438 * 14 13 12 16 16 C 1.46500 * 125.75492 * 179.97438 * 15 14 13 17 17 F 1.39906 * 109.46845 * 119.98105 * 16 15 14 18 18 F 1.39901 * 109.47364 * 239.97982 * 16 15 14 19 19 C 1.34287 * 108.49389 * 359.75536 * 15 14 13 20 20 C 1.46504 * 119.99728 * 299.75336 * 9 7 2 21 21 C 1.53000 * 117.49820 * 3.04295 * 20 9 7 22 22 C 1.52998 * 60.00013 * 252.51127 * 21 20 9 23 23 H 0.97001 * 119.99995 * 0.02562 * 1 2 3 24 24 H 1.08000 * 125.98591 * 359.97438 * 13 12 10 25 25 H 1.08999 * 109.46812 * 359.97438 * 16 15 14 26 26 H 1.07999 * 126.30191 * 180.26988 * 19 15 14 27 27 H 1.08996 * 115.54652 * 148.75442 * 20 9 7 28 28 H 1.08999 * 117.49873 * 0.02562 * 21 20 9 29 29 H 1.09002 * 117.49506 * 145.02170 * 21 20 9 30 30 H 1.08992 * 117.50052 * 252.51035 * 22 21 20 31 31 H 1.09002 * 117.51525 * 107.48380 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.5798 1.9977 1.3968 5 1 3.5010 1.4660 -0.7826 6 1 1.4059 2.6755 -0.6141 7 6 2.0091 -1.2036 -0.0005 8 1 1.4841 -2.1303 0.1783 9 7 3.3599 -1.2144 -0.2278 10 6 4.1971 -1.6997 0.7102 11 8 5.4003 -1.6278 0.5472 12 6 3.6549 -2.3174 1.9333 13 6 2.2990 -2.3418 2.3307 14 7 2.2225 -2.9795 3.4660 15 7 3.5062 -3.3884 3.8440 16 6 3.8441 -4.1335 5.0593 17 9 4.4395 -5.3503 4.7099 18 9 4.7358 -3.3833 5.8335 19 6 4.3756 -2.9869 2.9027 20 6 3.8944 -0.6985 -1.4905 21 6 2.8999 -0.0961 -2.4850 22 6 3.5383 -1.4569 -2.7707 23 1 -0.4850 0.8401 -0.0004 24 1 1.4711 -1.9084 1.7893 25 1 2.9369 -4.3241 5.6326 26 1 5.4426 -3.1545 2.9045 27 1 4.8845 -0.2466 -1.4321 28 1 1.8480 -0.0833 -2.1996 29 1 3.2357 0.7525 -3.0810 30 1 4.2940 -1.5035 -3.5547 31 1 2.9066 -2.3398 -2.6735 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601015267.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:00 Heat of formation + Delta-G solvation = -15.899003 kcal Electronic energy + Delta-G solvation = -20932.001762 eV Core-core repulsion = 17273.691645 eV Total energy + Delta-G solvation = -3658.310117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.35573 -48.45395 -42.32083 -40.45247 -37.98493 -35.33950 -33.84434 -33.29681 -31.30786 -27.37011 -27.08456 -24.32833 -23.36476 -22.54788 -21.86006 -20.98812 -19.78828 -18.84342 -18.76342 -18.53422 -17.41745 -17.12718 -16.23107 -15.99664 -15.93871 -15.44578 -15.21648 -15.01575 -14.79212 -14.70954 -14.43141 -14.31869 -13.83131 -13.42281 -13.17765 -12.94902 -12.73204 -12.22266 -12.21439 -11.89091 -11.55066 -11.04317 -10.90560 -10.85100 -10.55453 -9.93876 -9.18232 -8.43847 -6.33421 0.32903 0.78929 1.20183 1.32397 1.42358 1.52465 2.28191 2.44377 2.51301 2.61628 2.84578 3.21958 3.27232 3.60675 3.64359 4.01742 4.09333 4.19982 4.26302 4.34573 4.46561 4.71910 4.84573 4.95960 5.22447 5.44257 5.48923 5.53574 5.66728 6.13606 6.26094 6.42858 7.00505 7.39670 7.80190 8.63078 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.025788 B = 0.006212 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.534574 B = 4506.233717 C = 4946.415516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.904 3.096 4 H -0.295 1.295 5 H -0.232 1.232 6 H -0.278 1.278 7 C -0.345 4.345 8 H 0.086 0.914 9 N -0.448 5.448 10 C 0.564 3.436 11 O -0.617 6.617 12 C -0.273 4.273 13 C 0.109 3.891 14 N -0.306 5.306 15 N -0.432 5.432 16 C 0.504 3.496 17 F -0.185 7.185 18 F -0.186 7.186 19 C 0.127 3.873 20 C 0.049 3.951 21 C -0.181 4.181 22 C -0.168 4.168 23 H 0.281 0.719 24 H 0.221 0.779 25 H 0.206 0.794 26 H 0.204 0.796 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.664 -4.852 5.458 8.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.223 1.223 5 H -0.155 1.155 6 H -0.203 1.203 7 C -0.472 4.472 8 H 0.104 0.896 9 N -0.168 5.168 10 C 0.356 3.644 11 O -0.504 6.504 12 C -0.286 4.286 13 C -0.079 4.079 14 N -0.124 5.124 15 N -0.221 5.221 16 C 0.371 3.629 17 F -0.166 7.166 18 F -0.167 7.167 19 C -0.021 4.021 20 C -0.055 4.055 21 C -0.218 4.218 22 C -0.206 4.206 23 H 0.091 0.909 24 H 0.237 0.763 25 H 0.223 0.777 26 H 0.220 0.780 27 H 0.128 0.872 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.359 -5.225 6.443 9.372 hybrid contribution 0.734 1.159 -0.667 1.525 sum 5.093 -4.066 5.776 8.709 Atomic orbital electron populations 1.69739 1.07012 1.29251 1.46393 1.25889 0.95268 1.00472 0.92962 0.86481 0.81624 0.80614 0.78402 1.22255 1.15451 1.20292 1.18692 0.81301 0.94361 1.52873 0.89632 1.42909 1.06020 1.56022 1.11831 1.17823 0.84952 0.79240 0.82395 1.90595 1.15946 1.63154 1.80664 1.20384 0.94407 1.13455 1.00379 1.25790 0.98634 0.92641 0.90869 1.77209 0.97515 1.20692 1.16989 1.49939 1.06728 1.46196 1.19245 1.21523 0.90667 0.72161 0.78564 1.93124 1.86686 1.44248 1.92561 1.93123 1.72457 1.77392 1.73731 1.23207 0.97837 0.93299 0.87763 1.21864 0.97682 1.03707 0.82275 1.23364 0.99481 0.97355 1.01619 1.23279 1.03320 0.95401 0.98632 0.90926 0.76294 0.77729 0.77960 0.87234 0.88494 0.87105 0.86541 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.28 13.96 21.67 0.30 -44.97 16 2 C 0.06 2.97 3.90 84.93 0.33 3.31 16 3 Si 0.90 40.11 25.66 68.60 1.76 41.87 16 4 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 5 H -0.23 -9.85 4.99 99.48 0.50 -9.35 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.34 -16.61 5.76 84.07 0.48 -16.12 16 8 H 0.09 4.40 6.39 -2.91 -0.02 4.38 16 9 N -0.45 -20.83 2.06 -616.86 -1.27 -22.10 16 10 C 0.56 26.56 7.62 86.64 0.66 27.22 16 11 O -0.62 -30.73 16.67 -4.13 -0.07 -30.80 16 12 C -0.27 -11.47 6.03 -20.15 -0.12 -11.60 16 13 C 0.11 4.51 10.31 85.66 0.88 5.39 16 14 N -0.31 -11.15 12.50 -56.26 -0.70 -11.85 16 15 N -0.43 -13.40 3.84 -362.93 -1.40 -14.79 16 16 C 0.50 10.57 6.37 127.77 0.81 11.38 16 17 F -0.18 -4.03 17.47 44.97 0.79 -3.25 16 18 F -0.19 -4.12 17.47 44.97 0.79 -3.34 16 19 C 0.13 4.40 11.20 84.29 0.94 5.34 16 20 C 0.05 2.03 4.07 44.99 0.18 2.22 16 21 C -0.18 -6.77 7.05 30.59 0.22 -6.56 16 22 C -0.17 -5.94 10.36 30.59 0.32 -5.63 16 23 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 24 H 0.22 9.97 4.76 -2.91 -0.01 9.96 16 25 H 0.21 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.20 6.06 8.06 -2.91 -0.02 6.03 16 27 H 0.11 4.60 7.75 -2.39 -0.02 4.58 16 28 H 0.10 4.14 5.37 -2.39 -0.01 4.13 16 29 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 30 H 0.12 3.34 8.14 -2.39 -0.02 3.33 16 31 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -59.42 274.70 5.88 -53.53 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.98 Total: 20.74 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 4.71 Total: 14.96 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -3.07 Total: -93.72 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.07 Total: -30.80 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 1.57 Total: -6.59 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 1.76 Total: 41.87 kcal Total: -59.42 5.88 -53.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601015267.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.636 kcal (2) G-P(sol) polarization free energy of solvation -59.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds