Wall clock time and date at job start Mon Mar 30 2020 01:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 C 1.50701 * 109.46807 * 65.00319 * 4 2 1 6 6 H 1.07998 * 120.00496 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99832 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00049 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46778 * 89.99942 * 9 7 5 11 11 H 1.48494 * 109.46946 * 209.99639 * 9 7 5 12 12 H 1.48502 * 109.47167 * 330.00099 * 9 7 5 13 13 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 14 14 N 1.46499 * 109.46840 * 294.99527 * 13 2 1 15 15 C 1.39670 * 119.99908 * 180.02562 * 14 13 2 16 16 C 1.38897 * 120.05566 * 359.72444 * 15 14 13 17 17 C 1.38309 * 119.92642 * 179.72087 * 16 15 14 18 18 F 1.35099 * 119.97968 * 180.30149 * 17 16 15 19 19 C 1.38515 * 120.03849 * 0.55732 * 17 16 15 20 20 C 1.38347 * 120.10968 * 359.71885 * 19 17 16 21 21 Cl 1.73595 * 119.96546 * 180.02562 * 20 19 17 22 22 C 1.38260 * 120.07184 * 0.02562 * 20 19 17 23 23 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 24 24 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 25 25 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 27 27 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 28 28 H 0.97010 * 119.99808 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47398 * 54.99853 * 13 2 1 30 30 H 1.09001 * 109.47194 * 175.00033 * 13 2 1 31 31 H 0.97000 * 120.00420 * 0.02562 * 14 13 2 32 32 H 1.08002 * 120.03533 * 0.02562 * 16 15 14 33 33 H 1.08000 * 119.94626 * 179.74848 * 19 17 16 34 34 H 1.07992 * 120.01552 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9741 -2.3758 7 6 1.9924 -0.4024 -3.7283 8 7 2.6747 -1.5200 -3.8511 9 14 1.4977 0.5619 -5.2498 10 1 2.5630 1.5413 -5.5830 11 1 1.3104 -0.3724 -6.3887 12 1 0.2266 1.2833 -4.9870 13 6 2.0400 -0.7213 1.2493 14 7 1.6525 0.0354 2.4423 15 6 2.0089 -0.4293 3.7103 16 6 2.7258 -1.6116 3.8417 17 6 3.0824 -2.0663 5.0984 18 9 3.7850 -3.2130 5.2271 19 6 2.7150 -1.3494 6.2252 20 6 1.9959 -0.1745 6.0964 21 17 1.5380 0.7213 7.5111 22 6 1.6417 0.2870 4.8422 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1263 -0.7996 -1.2056 27 1 1.6053 -1.7199 -1.2951 28 1 2.9220 -1.8430 -4.7318 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 1.1483 0.8592 2.3517 32 1 3.0088 -2.1727 2.9634 33 1 2.9907 -1.7080 7.2059 34 1 1.0807 1.2044 4.7427 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602491229.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:43 Heat of formation + Delta-G solvation = -63.499775 kcal Electronic energy + Delta-G solvation = -17640.581826 eV Core-core repulsion = 14512.084303 eV Total energy + Delta-G solvation = -3128.497523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.97578 -40.51333 -38.29198 -37.37536 -35.49796 -33.93481 -31.47238 -30.43740 -28.71202 -27.24710 -24.99339 -23.77391 -22.82955 -20.94467 -19.08021 -18.58695 -17.66135 -17.22737 -16.71654 -16.64840 -16.31487 -16.09363 -15.79131 -15.39112 -14.63749 -14.48533 -14.25585 -14.11785 -13.80625 -13.36351 -12.99842 -12.82700 -12.79653 -12.53280 -12.45068 -12.25221 -12.06713 -11.99156 -11.63829 -11.17413 -11.04132 -10.89518 -10.53581 -9.76708 -8.56969 -8.17915 -6.26770 0.01728 0.29865 0.98303 1.41674 1.41928 1.52487 2.34830 2.45047 2.51500 3.16638 3.23710 3.98559 4.02477 4.04614 4.08489 4.16338 4.19446 4.39279 4.63796 4.74715 4.84275 4.90947 4.98100 5.08892 5.13391 5.21772 5.31237 5.47334 5.51802 5.59043 5.77230 5.86847 6.14225 6.28795 6.73289 6.89626 7.41908 8.93986 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032934 B = 0.003275 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.989109 B = 8546.528044 C = 9254.801791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 H 0.067 0.933 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.064 0.936 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.262 1.262 13 C 0.136 3.864 14 N -0.723 5.723 15 C 0.257 3.743 16 C -0.246 4.246 17 C 0.151 3.849 18 F -0.140 7.140 19 C -0.214 4.214 20 C 0.038 3.962 21 Cl -0.051 7.051 22 C -0.198 4.198 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.041 0.959 26 H -0.009 1.009 27 H -0.006 1.006 28 H 0.262 0.738 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.412 0.588 32 H 0.134 0.866 33 H 0.154 0.846 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.764 3.782 20.436 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.082 0.918 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.186 1.186 13 C 0.011 3.989 14 N -0.351 5.351 15 C 0.149 3.851 16 C -0.271 4.271 17 C 0.130 3.870 18 F -0.119 7.119 19 C -0.235 4.235 20 C 0.011 3.989 21 Cl -0.022 7.022 22 C -0.221 4.221 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.010 0.990 27 H 0.013 0.987 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.250 0.750 32 H 0.152 0.848 33 H 0.171 0.829 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.663 3.602 20.245 20.735 hybrid contribution 0.048 0.110 -1.121 1.127 sum -2.615 3.712 19.125 19.656 Atomic orbital electron populations 1.21659 0.94411 1.01121 1.01207 1.21209 0.96749 0.99363 0.93065 0.91475 1.18968 0.94552 0.94799 0.92159 1.21632 1.34508 1.08647 0.91925 0.91781 1.25918 0.95319 0.96019 1.02621 1.70094 1.40292 1.22830 1.24297 0.85542 0.79032 0.78366 0.78695 1.20061 1.21231 1.18613 1.21387 0.98870 0.95063 0.83542 1.44807 1.60486 1.28139 1.01622 1.17366 0.90836 0.91015 0.85840 1.20743 1.08909 1.00123 0.97278 1.17171 0.93319 0.82931 0.93545 1.91496 1.76260 1.47335 1.96769 1.20744 1.06697 0.97056 0.99037 1.20213 0.97668 0.92922 0.88120 1.98380 1.90920 1.74108 1.38819 1.20602 1.08715 1.03839 0.88983 0.91425 0.93371 0.93987 0.99042 0.98742 0.92969 0.92408 0.92819 0.75014 0.84790 0.82863 0.82735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 8.88 71.98 0.64 -3.44 16 2 C -0.08 -3.03 2.37 -10.79 -0.03 -3.05 16 3 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.03 1.60 4.45 29.85 0.13 1.74 16 5 C -0.53 -28.30 8.41 25.60 0.22 -28.08 16 6 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 7 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 8 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 9 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 13 C 0.14 4.05 4.30 86.38 0.37 4.42 16 14 N -0.72 -17.17 5.46 -339.45 -1.85 -19.02 16 15 C 0.26 6.01 6.65 38.21 0.25 6.26 16 16 C -0.25 -6.23 9.29 22.44 0.21 -6.03 16 17 C 0.15 3.63 7.30 22.35 0.16 3.80 16 18 F -0.14 -3.57 17.27 44.97 0.78 -2.79 16 19 C -0.21 -4.44 9.80 22.36 0.22 -4.22 16 20 C 0.04 0.76 6.32 22.30 0.14 0.90 16 21 Cl -0.05 -0.88 28.95 -2.72 -0.08 -0.96 16 22 C -0.20 -3.95 9.68 22.43 0.22 -3.73 16 23 H 0.07 1.68 7.18 -2.39 -0.02 1.66 16 24 H 0.05 1.71 6.95 -2.38 -0.02 1.70 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 27 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 29 H 0.06 1.77 7.94 -2.39 -0.02 1.75 16 30 H 0.05 1.69 7.96 -2.39 -0.02 1.67 16 31 H 0.41 8.30 7.67 -92.71 -0.71 7.59 16 32 H 0.13 3.54 6.73 -2.91 -0.02 3.52 16 33 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -59.40 307.19 4.56 -54.85 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.40 Total: 9.20 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 3.00 Total: -31.05 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -1.57 Total: -74.31 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -59.40 4.56 -54.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602491229.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.653 kcal (2) G-P(sol) polarization free energy of solvation -59.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds