Wall clock time and date at job start Mon Mar 30 2020 01:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47793 * 2 1 4 4 C 1.53007 * 109.47558 * 120.00091 * 2 1 3 5 5 C 1.50695 * 109.46818 * 295.00037 * 4 2 1 6 6 H 1.08001 * 120.00563 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99760 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00220 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00190 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47338 * 89.99764 * 9 7 5 11 11 H 1.48502 * 109.47321 * 210.00195 * 9 7 5 12 12 H 1.48507 * 109.47051 * 330.00022 * 9 7 5 13 13 C 1.53001 * 109.47251 * 240.00338 * 2 1 3 14 14 N 1.46493 * 109.47117 * 64.99512 * 13 2 1 15 15 C 1.39668 * 119.99892 * 180.02562 * 14 13 2 16 16 C 1.38898 * 120.05788 * 359.97438 * 15 14 13 17 17 C 1.38308 * 119.93179 * 180.02562 * 16 15 14 18 18 F 1.35099 * 119.98529 * 180.02562 * 17 16 15 19 19 C 1.38523 * 120.03301 * 0.02562 * 17 16 15 20 20 C 1.38345 * 120.11051 * 359.97438 * 19 17 16 21 21 Cl 1.73598 * 119.96122 * 179.97438 * 20 19 17 22 22 C 1.38247 * 120.07467 * 0.02562 * 20 19 17 23 23 H 1.09000 * 109.47054 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46725 * 299.99777 * 1 2 3 25 25 H 1.08998 * 109.46914 * 59.99962 * 1 2 3 26 26 H 1.08997 * 109.46466 * 54.99778 * 4 2 1 27 27 H 1.08994 * 109.47262 * 174.99352 * 4 2 1 28 28 H 0.97002 * 120.00195 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.46796 * 305.00104 * 13 2 1 30 30 H 1.08996 * 109.47525 * 184.99963 * 13 2 1 31 31 H 0.97001 * 120.00579 * 0.02562 * 14 13 2 32 32 H 1.08003 * 120.03515 * 0.02562 * 16 15 14 33 33 H 1.08000 * 119.93801 * 180.27496 * 19 17 16 34 34 H 1.08000 * 120.02270 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6415 0.0570 2.4765 6 1 1.0808 0.9745 2.3757 7 6 1.9926 -0.4023 3.7283 8 7 2.6758 -1.5193 3.8511 9 14 1.4978 0.5620 5.2497 10 1 0.1705 0.0936 5.7228 11 1 2.5068 0.3518 6.3188 12 1 1.4229 2.0074 4.9170 13 6 2.0400 -0.7212 -1.2493 14 7 1.6524 0.0354 -2.4423 15 6 2.0080 -0.4298 -3.7103 16 6 2.7296 -1.6094 -3.8415 17 6 3.0808 -2.0674 -5.0984 18 9 3.7822 -3.2148 -5.2273 19 6 2.7137 -1.3501 -6.2252 20 6 1.9950 -0.1751 -6.0964 21 17 1.5375 0.7210 -7.5111 22 6 1.6415 0.2869 -4.8422 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 1.6055 -1.7198 1.2951 27 1 3.1264 -0.7996 1.2055 28 1 2.9225 -1.8426 4.7318 29 1 1.6053 -1.7198 -1.2952 30 1 3.1263 -0.7994 -1.2057 31 1 1.1488 0.8595 -2.3518 32 1 3.0161 -2.1683 -2.9629 33 1 2.9849 -1.7115 -7.2062 34 1 1.0808 1.2045 -4.7426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602491231.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:45 Heat of formation + Delta-G solvation = -49.688035 kcal Electronic energy + Delta-G solvation = -17639.834339 eV Core-core repulsion = 14511.935737 eV Total energy + Delta-G solvation = -3127.898601 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.98903 -39.53965 -37.16659 -36.32091 -34.02779 -32.15848 -30.53694 -29.26282 -26.96980 -25.96505 -23.35723 -22.73651 -21.70323 -19.49184 -18.03973 -16.91815 -16.38785 -16.23749 -15.72183 -15.40274 -14.91542 -14.65741 -14.57614 -14.29524 -13.48973 -13.30170 -12.90395 -12.68283 -12.27053 -12.07759 -11.76100 -11.54918 -11.46175 -11.23352 -10.97233 -10.93617 -10.48704 -10.46422 -10.09872 -9.80175 -9.40300 -9.13344 -8.84543 -8.43281 -7.57557 -6.07700 -4.10084 0.95226 1.23464 1.84632 3.26751 3.33743 3.35580 3.42764 3.45447 4.19140 4.39679 4.90498 4.94276 4.99370 5.16261 5.28144 5.33091 5.52802 5.63140 5.78491 5.92558 5.99545 6.02191 6.08182 6.22643 6.29866 6.53513 6.73337 6.89495 6.94045 7.23659 7.54000 7.66541 7.67972 7.90151 8.31858 8.95474 9.54211 11.03618 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032934 B = 0.003275 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.977919 B = 8546.528396 C = 9254.793671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 H 0.064 0.936 4 C 0.030 3.970 5 C -0.518 4.518 6 H 0.057 0.943 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.120 3.880 14 N -0.727 5.727 15 C 0.265 3.735 16 C -0.234 4.234 17 C 0.162 3.838 18 F -0.134 7.134 19 C -0.220 4.220 20 C 0.043 3.957 21 Cl -0.066 7.066 22 C -0.207 4.207 23 H 0.047 0.953 24 H 0.065 0.935 25 H 0.030 0.970 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.261 0.739 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.404 0.596 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 2.195 -19.168 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.082 0.918 4 C -0.007 4.007 5 C -0.557 4.557 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.003 4.003 14 N -0.353 5.353 15 C 0.157 3.843 16 C -0.258 4.258 17 C 0.142 3.858 18 F -0.113 7.113 19 C -0.242 4.242 20 C 0.015 3.985 21 Cl -0.037 7.037 22 C -0.231 4.231 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.239 0.761 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.611 2.001 -18.946 19.119 hybrid contribution -0.310 0.599 0.836 1.074 sum -1.921 2.600 -18.110 18.396 Atomic orbital electron populations 1.21738 0.95778 1.01226 1.00306 1.21460 0.95751 0.99891 0.94409 0.91786 1.19080 0.96313 0.95570 0.89763 1.21169 1.35191 1.08424 0.90876 0.92524 1.25013 0.95150 0.95078 0.99169 1.69954 1.38650 1.21126 1.23607 0.86609 0.78282 0.80371 0.82837 1.20666 1.21219 1.19888 1.21794 0.99520 0.95370 0.83648 1.45118 1.59914 1.27905 1.02337 1.17339 0.90365 0.90914 0.85732 1.20682 1.08252 0.99705 0.97179 1.17064 0.92805 0.82702 0.93231 1.91513 1.76099 1.46898 1.96743 1.20555 1.07595 0.97282 0.98754 1.20126 0.97904 0.92922 0.87538 1.98371 1.91124 1.74527 1.39718 1.20420 1.09551 1.03592 0.89522 0.93364 0.91606 0.95083 0.96250 0.96384 0.92921 0.92064 0.91989 0.76066 0.83994 0.84401 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.88 37.16 0.33 -1.90 16 2 C -0.10 -1.73 2.37 -90.62 -0.22 -1.95 16 3 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.52 -13.74 8.41 -34.44 -0.29 -14.03 16 6 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 13 C 0.12 1.81 4.30 -4.04 -0.02 1.79 16 14 N -0.73 -9.27 5.46 -58.65 -0.32 -9.59 16 15 C 0.27 3.32 6.65 -83.80 -0.56 2.76 16 16 C -0.23 -3.03 9.29 -39.31 -0.37 -3.39 16 17 C 0.16 2.03 7.30 -39.45 -0.29 1.74 16 18 F -0.13 -1.73 17.27 2.25 0.04 -1.70 16 19 C -0.22 -2.49 9.80 -39.44 -0.39 -2.88 16 20 C 0.04 0.48 6.31 -39.54 -0.25 0.23 16 21 Cl -0.07 -0.66 28.95 -51.86 -1.50 -2.16 16 22 C -0.21 -2.33 9.67 -39.34 -0.38 -2.71 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.06 1.21 6.95 -51.92 -0.36 0.85 16 25 H 0.03 0.42 7.18 -51.93 -0.37 0.05 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.06 0.94 7.95 -51.92 -0.41 0.52 16 30 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 31 H 0.40 4.61 7.67 -40.82 -0.31 4.30 16 32 H 0.14 1.84 6.73 -52.48 -0.35 1.49 16 33 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 307.19 15.07 4.63 4.63 Total: -1.00 -27.65 307.19 -8.35 -36.00 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.27 Total: 0.39 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -2.64 Total: -18.27 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.42 Total: -34.83 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.65 -8.35 -36.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602491231.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.687 kcal (2) G-P(sol) polarization free energy of solvation -27.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds