Wall clock time and date at job start Mon Mar 30 2020 01:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00243 * 2 1 4 4 H 1.48505 * 109.46748 * 269.99841 * 3 2 1 5 5 H 1.48499 * 109.47165 * 29.99542 * 3 2 1 6 6 H 1.48497 * 109.47322 * 150.00117 * 3 2 1 7 7 C 1.38817 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99815 * 164.25919 * 7 2 1 9 9 N 1.36942 * 119.99903 * 344.26305 * 7 2 1 10 10 C 1.47220 * 121.32617 * 155.39396 * 9 7 2 11 11 C 1.52780 * 107.92889 * 115.85201 * 10 9 7 12 12 C 1.50606 * 110.85315 * 47.47941 * 11 10 9 13 13 C 1.38979 * 117.62177 * 160.03670 * 12 11 10 14 14 C 1.37917 * 120.57963 * 179.32954 * 13 12 11 15 15 C 1.38261 * 119.82757 * 359.82771 * 14 13 12 16 16 C 1.50694 * 120.14449 * 180.30844 * 15 14 13 17 17 F 1.39894 * 109.47126 * 269.98030 * 16 15 14 18 18 F 1.39905 * 109.46789 * 29.98104 * 16 15 14 19 19 F 1.39899 * 109.47249 * 149.97751 * 16 15 14 20 20 C 1.37963 * 119.71739 * 0.28755 * 15 14 13 21 21 C 1.37659 * 122.85857 * 339.66301 * 12 11 10 22 22 C 1.46682 * 121.32450 * 335.41084 * 9 7 2 23 23 H 0.96998 * 119.99810 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.76858 * 356.24340 * 10 9 7 25 25 H 1.09003 * 109.81361 * 235.48564 * 10 9 7 26 26 H 1.08998 * 109.20437 * 287.12703 * 11 10 9 27 27 H 1.08994 * 109.20477 * 167.83678 * 11 10 9 28 28 H 1.07997 * 119.71100 * 359.35199 * 13 12 11 29 29 H 1.08002 * 120.08526 * 179.85039 * 14 13 12 30 30 H 1.08001 * 119.74975 * 179.80095 * 20 15 14 31 31 H 1.08994 * 109.44016 * 344.47939 * 22 9 7 32 32 H 1.09001 * 109.43382 * 104.40160 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0598 -1.2199 -0.2532 9 7 1.3640 -2.3658 0.3227 10 6 1.8513 -3.6699 -0.1560 11 6 2.2713 -4.4909 1.0621 12 6 1.2119 -4.4440 2.1315 13 6 1.2264 -5.4434 3.0971 14 6 0.2930 -5.4517 4.1124 15 6 -0.6646 -4.4563 4.1743 16 6 -1.6836 -4.4545 5.2845 17 9 -2.8080 -5.1855 4.8865 18 9 -1.1283 -5.0387 6.4280 19 9 -2.0603 -3.1377 5.5696 20 6 -0.6828 -3.4643 3.2157 21 6 0.2517 -3.4593 2.1889 22 6 0.1583 -2.3623 1.1582 23 1 -0.4850 0.8400 -0.0004 24 1 2.7070 -3.5242 -0.8153 25 1 1.0561 -4.1871 -0.6929 26 1 3.2022 -4.0888 1.4619 27 1 2.4297 -5.5260 0.7595 28 1 1.9754 -6.2202 3.0523 29 1 0.3101 -6.2336 4.8572 30 1 -1.4326 -2.6882 3.2618 31 1 0.0679 -1.3992 1.6606 32 1 -0.7178 -2.5281 0.5313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602928098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:11 Heat of formation + Delta-G solvation = -110.178568 kcal Electronic energy + Delta-G solvation = -20733.129199 eV Core-core repulsion = 17050.810851 eV Total energy + Delta-G solvation = -3682.318348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.00780 -47.52831 -47.47033 -39.54950 -36.09976 -33.11631 -31.64664 -30.76259 -28.97552 -25.84855 -25.47892 -22.98429 -22.01988 -21.83525 -19.35159 -18.34315 -18.20549 -17.76592 -16.75961 -15.24771 -15.06094 -14.87739 -14.42004 -14.23540 -14.01664 -13.98982 -13.90190 -13.67321 -13.64362 -13.50180 -13.01301 -12.75850 -12.36082 -12.08961 -11.68546 -11.43032 -11.11143 -10.97864 -10.80324 -10.46379 -10.34997 -9.97208 -9.89469 -8.78472 -8.60860 -8.11238 -6.87134 -5.90294 -3.30407 1.28100 1.63416 2.84707 3.33116 3.40663 3.42534 3.80841 3.92291 4.21677 4.41387 4.61420 5.05433 5.14441 5.22059 5.31735 5.34708 5.64664 5.67518 5.89677 5.97618 6.02127 6.27091 6.31064 6.43482 6.49569 6.71079 6.72951 6.92803 7.04217 7.20986 7.47615 7.69220 8.27299 9.07899 9.70301 10.27376 11.20424 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.023192 B = 0.005640 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.021094 B = 4963.530649 C = 5724.195120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.002 3.998 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.071 0.929 9 N -0.593 5.593 10 C 0.141 3.859 11 C -0.103 4.103 12 C -0.035 4.035 13 C -0.129 4.129 14 C -0.091 4.091 15 C -0.195 4.195 16 C 0.510 3.490 17 F -0.181 7.181 18 F -0.183 7.183 19 F -0.178 7.178 20 C -0.072 4.072 21 C -0.078 4.078 22 C 0.204 3.796 23 H 0.256 0.744 24 H 0.064 0.936 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 -10.489 7.630 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.089 0.911 9 N -0.315 5.315 10 C 0.014 3.986 11 C -0.142 4.142 12 C -0.035 4.035 13 C -0.147 4.147 14 C -0.110 4.110 15 C -0.197 4.197 16 C 0.456 3.544 17 F -0.163 7.163 18 F -0.164 7.164 19 F -0.160 7.160 20 C -0.090 4.090 21 C -0.079 4.079 22 C 0.078 3.922 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.046 0.954 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.118 0.882 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.720 -10.303 7.630 12.841 hybrid contribution 0.136 0.818 0.367 0.906 sum -0.585 -9.486 7.997 12.421 Atomic orbital electron populations 1.69987 1.05241 1.25845 1.54097 1.25027 0.95412 0.98479 1.00723 0.86244 0.79115 0.83356 0.77770 1.21280 1.21448 1.20443 1.19159 0.92398 0.84192 1.42361 0.91145 1.43992 1.30199 1.01493 1.55782 1.20920 0.97767 0.87190 0.92723 1.21085 0.96624 1.00277 0.96230 1.19859 0.95454 0.92776 0.95452 1.21149 0.99185 0.99479 0.94908 1.20607 0.94373 0.97264 0.98710 1.19754 0.99773 1.01755 0.98381 1.18385 0.80723 0.73413 0.81862 1.93197 1.54585 1.77806 1.90673 1.93154 1.85307 1.84527 1.53430 1.93185 1.92222 1.36348 1.94199 1.20926 0.98660 0.96659 0.92780 1.21057 0.92888 0.97583 0.96418 1.19807 0.89419 0.94182 0.88748 0.93366 0.91780 0.95372 0.90528 0.91594 0.85749 0.85678 0.85050 0.88203 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.37 11.10 55.49 0.62 -24.76 16 2 C 0.00 0.05 4.99 -17.43 -0.09 -0.03 16 3 Si 0.91 21.15 29.58 -169.99 -5.03 16.12 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.25 -6.65 9.69 -15.06 -0.15 -6.80 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.59 -14.28 2.97 -173.95 -0.52 -14.79 16 10 C 0.14 2.76 6.52 -3.76 -0.02 2.73 16 11 C -0.10 -1.69 5.87 -28.04 -0.16 -1.86 16 12 C -0.04 -0.61 5.76 -104.60 -0.60 -1.21 16 13 C -0.13 -1.89 9.59 -39.42 -0.38 -2.26 16 14 C -0.09 -1.31 9.40 -39.69 -0.37 -1.68 16 15 C -0.20 -3.08 5.44 -104.72 -0.57 -3.65 16 16 C 0.51 7.49 3.37 36.00 0.12 7.61 16 17 F -0.18 -2.65 17.30 2.25 0.04 -2.61 16 18 F -0.18 -2.55 16.48 2.25 0.04 -2.51 16 19 F -0.18 -2.73 16.47 2.25 0.04 -2.69 16 20 C -0.07 -1.26 8.99 -39.46 -0.35 -1.61 16 21 C -0.08 -1.51 5.82 -104.55 -0.61 -2.12 16 22 C 0.20 4.72 4.85 -5.04 -0.02 4.69 16 23 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 28 H 0.12 1.46 8.05 -52.49 -0.42 1.03 16 29 H 0.13 1.49 7.62 -52.49 -0.40 1.09 16 30 H 0.13 2.23 7.59 -52.49 -0.40 1.83 16 31 H 0.10 2.57 6.34 -51.93 -0.33 2.24 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 281.80 15.07 4.25 4.25 Total: -1.00 -27.79 281.80 -6.98 -34.78 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -3.20 Total: -1.58 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -3.21 Total: -6.20 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.10 Total: -39.55 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 0.11 Total: -7.82 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.79 -6.98 -34.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602928098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.402 kcal (2) G-P(sol) polarization free energy of solvation -27.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds