Wall clock time and date at job start Mon Mar 30 2020 01:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 110.99985 * 2 1 4 4 C 1.52998 * 109.47255 * 66.04430 * 3 2 1 5 5 C 1.53002 * 109.46890 * 180.02562 * 4 3 2 6 6 S 1.81000 * 109.46929 * 180.02562 * 5 4 3 7 7 C 1.76197 * 99.99912 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00427 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99687 * 179.97438 * 7 6 5 10 10 N 1.31626 * 120.00297 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99576 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47038 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46779 * 120.00219 * 11 9 7 14 14 H 1.48500 * 109.47194 * 239.99989 * 11 9 7 15 15 C 1.46901 * 111.00137 * 236.04521 * 2 1 3 16 16 C 1.50703 * 109.46801 * 293.95328 * 15 2 1 17 17 C 1.38425 * 122.53762 * 89.99949 * 16 15 2 18 18 C 1.33390 * 114.92123 * 179.97438 * 17 16 15 19 19 S 1.75891 * 109.59251 * 0.02562 * 18 17 16 20 20 C 1.33383 * 122.54063 * 269.97222 * 16 15 2 21 21 H 1.08995 * 109.47322 * 183.95752 * 1 2 3 22 22 H 1.09004 * 109.47369 * 303.95706 * 1 2 3 23 23 H 1.09002 * 109.47321 * 63.95677 * 1 2 3 24 24 H 1.09006 * 109.46921 * 186.04883 * 3 2 1 25 25 H 1.09000 * 109.46957 * 306.04070 * 3 2 1 26 26 H 1.08992 * 109.47404 * 299.99870 * 4 3 2 27 27 H 1.09001 * 109.47056 * 60.00611 * 4 3 2 28 28 H 1.09000 * 109.47162 * 299.99855 * 5 4 3 29 29 H 1.08997 * 109.47282 * 60.00225 * 5 4 3 30 30 H 0.97000 * 120.00029 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.47322 * 173.95362 * 15 2 1 32 32 H 1.09003 * 109.47232 * 53.94995 * 15 2 1 33 33 H 1.07997 * 122.54292 * 359.71157 * 17 16 15 34 34 H 1.08003 * 125.20243 * 179.97438 * 18 17 16 35 35 H 1.08000 * 125.20529 * 0.06732 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1792 3.4861 1.3179 6 16 1.7492 4.2974 2.8776 7 6 2.4806 5.8783 2.6119 8 1 2.9991 6.0849 1.6874 9 6 2.3902 6.8581 3.5909 10 7 1.7578 6.6065 4.7176 11 14 3.1662 8.5339 3.3095 12 1 3.8122 8.5620 1.9727 13 1 2.1165 9.5824 3.3737 14 1 4.1860 8.7896 4.3582 15 6 1.9955 -0.7660 -1.1376 16 6 1.6369 -2.2204 -0.9727 17 6 0.4642 -2.7595 -1.4730 18 6 0.3007 -4.0628 -1.2407 19 16 1.6818 -4.6797 -0.3430 20 6 2.4258 -3.0860 -0.3343 21 1 -0.3634 -1.0252 0.0709 22 1 -0.3634 0.5740 0.8524 23 1 -0.3634 0.4512 -0.9233 24 1 3.0798 1.3444 -0.1083 25 1 1.5611 1.9273 -0.8310 26 1 0.5472 2.0846 1.4265 27 1 2.0658 1.5016 2.1491 28 1 3.2635 3.4594 1.2094 29 1 1.7445 4.0417 0.4870 30 1 1.6950 7.2911 5.4019 31 1 3.0797 -0.6611 -1.1756 32 1 1.5611 -0.3873 -2.0628 33 1 -0.2653 -2.1687 -2.0070 34 1 -0.5500 -4.6493 -1.5550 35 1 3.3757 -2.8449 0.1197 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610409561.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:18 Heat of formation + Delta-G solvation = 25.092635 kcal Electronic energy + Delta-G solvation = -15527.300555 eV Core-core repulsion = 12970.901569 eV Total energy + Delta-G solvation = -2556.398985 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.09945 -36.82677 -32.81262 -32.39501 -30.21374 -27.27880 -26.85276 -25.53785 -23.85193 -21.96746 -20.53335 -18.91368 -17.76511 -17.42756 -15.85498 -15.75102 -15.17789 -14.79052 -14.41863 -14.19869 -13.75323 -13.13094 -13.01750 -12.89558 -12.81093 -12.31080 -12.09647 -11.75725 -11.62253 -11.39987 -11.24819 -11.06700 -10.94478 -10.74865 -10.58977 -10.24696 -9.51750 -9.04917 -8.97662 -8.63853 -8.29209 -8.25656 -6.50290 -6.21091 -3.90906 0.84165 1.48759 1.80468 2.46868 3.21922 3.23471 3.31025 3.58390 4.10441 4.24659 4.71421 4.81288 5.02366 5.14813 5.19444 5.22027 5.32293 5.36951 5.43830 5.50846 5.57775 5.70010 5.77986 5.84376 5.91847 6.00160 6.11214 6.20685 6.29368 6.39003 6.62568 6.78370 7.05310 7.09571 7.62561 8.38691 9.25275 10.87162 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.056918 B = 0.002662 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.821795 B =10513.942139 C =10564.253339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.536 5.536 3 C 0.060 3.940 4 C -0.093 4.093 5 C -0.112 4.112 6 S -0.133 6.133 7 C -0.515 4.515 8 H 0.072 0.928 9 C 0.070 3.930 10 N -0.870 5.870 11 Si 0.918 3.082 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.112 3.888 16 C -0.096 4.096 17 C -0.126 4.126 18 C -0.216 4.216 19 S 0.084 5.916 20 C -0.187 4.187 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.023 0.977 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.266 0.734 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.137 0.863 34 H 0.162 0.838 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.375 -20.174 -13.079 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.259 5.259 3 C -0.069 4.069 4 C -0.132 4.132 5 C -0.262 4.262 6 S 0.095 5.905 7 C -0.663 4.663 8 H 0.091 0.909 9 C -0.139 4.139 10 N -0.505 5.505 11 Si 0.744 3.256 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C -0.018 4.018 16 C -0.109 4.109 17 C -0.157 4.157 18 C -0.351 4.351 19 S 0.347 5.653 20 C -0.323 4.323 21 H 0.086 0.914 22 H 0.094 0.906 23 H 0.041 0.959 24 H 0.092 0.908 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.154 0.846 34 H 0.179 0.821 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.446 -22.150 -11.002 24.775 hybrid contribution 0.414 3.308 -2.445 4.134 sum -1.031 -18.843 -13.447 23.172 Atomic orbital electron populations 1.22500 0.87405 1.02131 1.00850 1.62003 1.08191 1.14007 1.41740 1.22216 0.99920 0.86904 0.97895 1.21280 1.01312 0.93985 0.96638 1.23233 1.02274 0.97544 1.03104 1.84645 1.74444 1.13275 1.18137 1.22735 1.40444 0.97454 1.05690 0.90950 1.25022 0.95255 0.99032 0.94553 1.70033 1.40126 1.34250 1.06133 0.86118 0.78881 0.82175 0.78377 1.19628 1.20596 1.20564 1.20751 1.00392 0.88495 0.92152 1.18809 0.94851 0.96510 1.00713 1.20114 0.98240 0.94557 1.02805 1.25537 1.03291 0.98955 1.07346 1.84275 1.14328 1.11542 1.55158 1.25485 1.05118 0.95240 1.06493 0.91392 0.90612 0.95860 0.90844 0.94910 0.91622 0.90775 0.92154 0.92386 0.92382 0.89933 0.93982 0.84553 0.82055 0.81737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.02 60.06 0.54 0.77 16 2 N -0.54 -6.67 4.75 -244.37 -1.16 -7.83 16 3 C 0.06 0.81 4.96 -3.83 -0.02 0.79 16 4 C -0.09 -1.56 5.15 -26.73 -0.14 -1.70 16 5 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 6 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 7 C -0.51 -14.91 9.50 30.94 0.29 -14.62 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.63 16 9 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 10 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 11 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.11 1.17 5.23 -4.97 -0.03 1.15 16 16 C -0.10 -0.98 4.75 -106.25 -0.50 -1.48 16 17 C -0.13 -1.16 8.40 -41.21 -0.35 -1.51 16 18 C -0.22 -1.82 11.23 29.04 0.33 -1.50 16 19 S 0.08 0.73 23.34 -107.50 -2.51 -1.78 16 20 C -0.19 -1.83 10.98 29.04 0.32 -1.51 16 21 H 0.07 0.75 6.23 -51.93 -0.32 0.43 16 22 H 0.08 0.95 6.30 -51.93 -0.33 0.63 16 23 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 25 H 0.03 0.44 8.12 -51.93 -0.42 0.01 16 26 H 0.07 1.11 6.47 -51.93 -0.34 0.77 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 29 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.08 0.81 7.91 -51.93 -0.41 0.40 16 32 H 0.04 0.41 8.11 -51.93 -0.42 -0.01 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 317.92 15.07 4.79 4.79 Total: -1.00 -31.20 317.92 -10.07 -41.27 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -5.16 Total: -2.01 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 0.56 Total: -19.78 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: -0.43 Total: -33.31 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -4.81 Total: -7.62 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.20 -10.07 -41.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610409561.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.362 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds