Wall clock time and date at job start Mon Mar 30 2020 01:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 110.99985 * 2 1 4 4 C 1.52998 * 109.47255 * 66.04430 * 3 2 1 5 5 C 1.53002 * 109.46890 * 180.02562 * 4 3 2 6 6 S 1.81000 * 109.46929 * 180.02562 * 5 4 3 7 7 C 1.76197 * 99.99912 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00427 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99687 * 179.97438 * 7 6 5 10 10 N 1.31626 * 120.00297 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99576 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47038 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46779 * 120.00219 * 11 9 7 14 14 H 1.48500 * 109.47194 * 239.99989 * 11 9 7 15 15 C 1.46901 * 111.00137 * 236.04521 * 2 1 3 16 16 C 1.50703 * 109.46801 * 293.95328 * 15 2 1 17 17 C 1.38425 * 122.53762 * 89.99949 * 16 15 2 18 18 C 1.33390 * 114.92123 * 179.97438 * 17 16 15 19 19 S 1.75891 * 109.59251 * 0.02562 * 18 17 16 20 20 C 1.33383 * 122.54063 * 269.97222 * 16 15 2 21 21 H 1.08995 * 109.47322 * 183.95752 * 1 2 3 22 22 H 1.09004 * 109.47369 * 303.95706 * 1 2 3 23 23 H 1.09002 * 109.47321 * 63.95677 * 1 2 3 24 24 H 1.09006 * 109.46921 * 186.04883 * 3 2 1 25 25 H 1.09000 * 109.46957 * 306.04070 * 3 2 1 26 26 H 1.08992 * 109.47404 * 299.99870 * 4 3 2 27 27 H 1.09001 * 109.47056 * 60.00611 * 4 3 2 28 28 H 1.09000 * 109.47162 * 299.99855 * 5 4 3 29 29 H 1.08997 * 109.47282 * 60.00225 * 5 4 3 30 30 H 0.97000 * 120.00029 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.47322 * 173.95362 * 15 2 1 32 32 H 1.09003 * 109.47232 * 53.94995 * 15 2 1 33 33 H 1.07997 * 122.54292 * 359.71157 * 17 16 15 34 34 H 1.08003 * 125.20243 * 179.97438 * 18 17 16 35 35 H 1.08000 * 125.20529 * 0.06732 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1792 3.4861 1.3179 6 16 1.7492 4.2974 2.8776 7 6 2.4806 5.8783 2.6119 8 1 2.9991 6.0849 1.6874 9 6 2.3902 6.8581 3.5909 10 7 1.7578 6.6065 4.7176 11 14 3.1662 8.5339 3.3095 12 1 3.8122 8.5620 1.9727 13 1 2.1165 9.5824 3.3737 14 1 4.1860 8.7896 4.3582 15 6 1.9955 -0.7660 -1.1376 16 6 1.6369 -2.2204 -0.9727 17 6 0.4642 -2.7595 -1.4730 18 6 0.3007 -4.0628 -1.2407 19 16 1.6818 -4.6797 -0.3430 20 6 2.4258 -3.0860 -0.3343 21 1 -0.3634 -1.0252 0.0709 22 1 -0.3634 0.5740 0.8524 23 1 -0.3634 0.4512 -0.9233 24 1 3.0798 1.3444 -0.1083 25 1 1.5611 1.9273 -0.8310 26 1 0.5472 2.0846 1.4265 27 1 2.0658 1.5016 2.1491 28 1 3.2635 3.4594 1.2094 29 1 1.7445 4.0417 0.4870 30 1 1.6950 7.2911 5.4019 31 1 3.0797 -0.6611 -1.1756 32 1 1.5611 -0.3873 -2.0628 33 1 -0.2653 -2.1687 -2.0070 34 1 -0.5500 -4.6493 -1.5550 35 1 3.3757 -2.8449 0.1197 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610409561.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:17 Heat of formation + Delta-G solvation = 6.719067 kcal Electronic energy + Delta-G solvation = -15528.097292 eV Core-core repulsion = 12970.901569 eV Total energy + Delta-G solvation = -2557.195723 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.90778 -37.75996 -34.61736 -34.07451 -30.98664 -28.19166 -28.10467 -27.53890 -24.88418 -22.95294 -21.71160 -19.67708 -19.50529 -18.43264 -16.94281 -16.89564 -16.74652 -16.16082 -15.91701 -15.37768 -15.09786 -14.49937 -13.87166 -13.78868 -13.74741 -13.48289 -13.29689 -13.10481 -12.98183 -12.88720 -12.62882 -12.50619 -12.26771 -12.20219 -11.67170 -11.59456 -11.31903 -11.14811 -10.30621 -9.67110 -9.40286 -9.15433 -8.66373 -8.37123 -6.13378 0.15100 0.81627 1.12424 1.31772 1.38624 1.49779 1.69977 1.80790 2.28780 2.97070 3.11659 3.34591 3.95758 4.03907 4.07002 4.19208 4.31613 4.38140 4.47314 4.52839 4.60726 4.67097 4.74651 4.75859 4.80926 4.85037 5.06912 5.17056 5.20979 5.34142 5.40292 5.51827 5.58165 6.09348 6.12532 6.18726 7.05104 8.72605 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.056918 B = 0.002662 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.821795 B =10513.942139 C =10564.253339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.546 5.546 3 C 0.071 3.929 4 C -0.082 4.082 5 C -0.086 4.086 6 S -0.201 6.201 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.013 3.987 10 N -0.908 5.908 11 Si 0.995 3.005 12 H -0.262 1.262 13 H -0.272 1.272 14 H -0.271 1.271 15 C 0.114 3.886 16 C -0.106 4.106 17 C -0.139 4.139 18 C -0.215 4.215 19 S 0.090 5.910 20 C -0.202 4.202 21 H 0.074 0.926 22 H 0.061 0.939 23 H 0.032 0.968 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.271 0.729 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.148 0.852 34 H 0.184 0.816 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 -20.400 -14.621 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.270 5.270 3 C -0.059 4.059 4 C -0.121 4.121 5 C -0.236 4.236 6 S 0.027 5.973 7 C -0.684 4.684 8 H 0.091 0.909 9 C -0.191 4.191 10 N -0.545 5.545 11 Si 0.817 3.183 12 H -0.186 1.186 13 H -0.197 1.197 14 H -0.197 1.197 15 C -0.015 4.015 16 C -0.119 4.119 17 C -0.169 4.169 18 C -0.350 4.350 19 S 0.353 5.647 20 C -0.339 4.339 21 H 0.093 0.907 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.165 0.835 34 H 0.201 0.799 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.112 -22.396 -12.552 25.698 hybrid contribution 0.284 3.248 -1.992 3.821 sum -0.828 -19.148 -14.544 24.059 Atomic orbital electron populations 1.22472 0.87081 1.02410 1.00700 1.61942 1.08615 1.13261 1.43210 1.22015 1.00550 0.87536 0.95771 1.21157 1.00769 0.91765 0.98374 1.23152 1.02559 0.98833 0.99046 1.84680 1.75144 1.14010 1.23447 1.23070 1.40846 0.98465 1.06018 0.90890 1.26094 0.95540 1.03447 0.94047 1.70166 1.41302 1.35863 1.07142 0.84950 0.78068 0.76494 0.78748 1.18596 1.19677 1.19669 1.20767 1.00717 0.88445 0.91604 1.18896 0.95431 0.96359 1.01215 1.20259 0.98300 0.95050 1.03303 1.25861 1.03617 0.98975 1.06517 1.84256 1.14439 1.10915 1.55050 1.25670 1.05567 0.95927 1.06717 0.90728 0.91997 0.94897 0.89965 0.94197 0.91978 0.91841 0.91781 0.91969 0.91978 0.89378 0.93108 0.83473 0.79918 0.81344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.02 127.69 1.15 1.62 16 2 N -0.55 -12.72 4.75 -927.04 -4.41 -17.13 16 3 C 0.07 1.79 4.96 86.30 0.43 2.22 16 4 C -0.08 -2.68 5.15 30.59 0.16 -2.52 16 5 C -0.09 -3.49 5.67 71.98 0.41 -3.09 16 6 S -0.20 -10.90 21.44 -56.49 -1.21 -12.11 16 7 C -0.54 -31.29 9.50 67.96 0.65 -30.65 16 8 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 9 C 0.01 0.77 5.49 84.86 0.47 1.24 16 10 N -0.91 -55.40 13.22 21.65 0.29 -55.11 16 11 Si 1.00 44.21 29.55 68.60 2.03 46.23 16 12 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 13 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 C 0.11 2.17 5.23 85.56 0.45 2.62 16 16 C -0.11 -1.99 4.75 -20.92 -0.10 -2.09 16 17 C -0.14 -2.29 8.40 21.22 0.18 -2.11 16 18 C -0.21 -3.18 11.23 66.72 0.75 -2.43 16 19 S 0.09 1.44 23.34 -56.49 -1.32 0.12 16 20 C -0.20 -3.72 10.98 66.72 0.73 -2.99 16 21 H 0.07 1.53 6.23 -2.39 -0.01 1.52 16 22 H 0.06 1.52 6.30 -2.38 -0.02 1.50 16 23 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.08 1.96 7.93 -2.38 -0.02 1.94 16 25 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 26 H 0.06 2.08 6.47 -2.39 -0.02 2.06 16 27 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.06 2.53 8.14 -2.40 -0.02 2.51 16 29 H 0.06 2.46 8.14 -2.40 -0.02 2.44 16 30 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.09 1.56 7.91 -2.39 -0.02 1.54 16 32 H 0.05 0.88 8.11 -2.39 -0.02 0.86 16 33 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 34 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -66.73 317.92 1.70 -65.03 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.06 Total: 11.14 kcal Atomic # 6 Polarization: -43.44 SS G_CDS: 5.26 Total: -38.18 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -4.12 Total: -72.24 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -9.46 SS G_CDS: -2.53 Total: -11.99 kcal Total: -66.73 1.70 -65.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610409561.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.751 kcal (2) G-P(sol) polarization free energy of solvation -66.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds