Wall clock time and date at job start Mon Mar 30 2020 00:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86793 * 120.00222 * 2 1 4 4 H 1.48493 * 109.47331 * 89.99634 * 3 2 1 5 5 H 1.48500 * 109.47202 * 209.99609 * 3 2 1 6 6 H 1.48504 * 109.47147 * 329.99845 * 3 2 1 7 7 C 1.39024 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99747 * 199.40643 * 7 2 1 9 9 N 1.36912 * 119.99834 * 19.41123 * 7 2 1 10 10 C 1.34777 * 120.00343 * 44.26063 * 9 7 2 11 11 O 1.21605 * 119.99533 * 355.22895 * 10 9 7 12 12 C 1.47602 * 120.00253 * 175.23487 * 10 9 7 13 13 C 1.41546 * 126.52732 * 174.12535 * 12 10 9 14 14 C 1.35345 * 105.50713 * 179.97438 * 13 12 10 15 15 N 1.35053 * 107.23692 * 359.97438 * 14 13 12 16 16 C 1.46505 * 124.87733 * 180.02562 * 15 14 13 17 17 F 1.39898 * 109.46992 * 210.00567 * 16 15 14 18 18 F 1.39903 * 109.47229 * 330.00496 * 16 15 14 19 19 N 1.28467 * 110.24377 * 359.75403 * 15 14 13 20 20 C 1.46501 * 119.99664 * 224.25072 * 9 7 2 21 21 C 1.53000 * 117.50227 * 5.05752 * 20 9 7 22 22 C 1.53003 * 60.00101 * 252.50836 * 21 20 9 23 23 H 0.97000 * 119.99880 * 354.96383 * 1 2 3 24 24 H 1.08008 * 127.24380 * 359.97438 * 13 12 10 25 25 H 1.08000 * 126.38024 * 180.02562 * 14 13 12 26 26 H 1.09000 * 109.46915 * 90.00624 * 16 15 14 27 27 H 1.09004 * 115.54982 * 150.76258 * 20 9 7 28 28 H 1.09002 * 117.49241 * 359.97438 * 21 20 9 29 29 H 1.08994 * 117.50346 * 145.01711 * 21 20 9 30 30 H 1.09000 * 117.49716 * 252.51192 * 22 21 20 31 31 H 1.09001 * 117.51806 * 107.47552 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6176 0.0000 4 1 2.4953 2.0464 1.4000 5 1 3.5454 1.4400 -0.7000 6 1 1.4453 2.6526 -0.7001 7 6 2.0088 -1.2040 0.0005 8 1 3.0428 -1.2305 0.3113 9 7 1.3825 -2.3561 -0.3930 10 6 0.6054 -2.3584 -1.4942 11 8 0.3903 -1.3196 -2.0887 12 6 0.0153 -3.6217 -1.9785 13 6 -0.9076 -3.7673 -3.0417 14 6 -1.1621 -5.0943 -3.1208 15 7 -0.4315 -5.6999 -2.1599 16 6 -0.4162 -7.1421 -1.9030 17 9 -0.1663 -7.3714 -0.5457 18 9 -1.6562 -7.6904 -2.2480 19 7 0.2526 -4.8301 -1.5072 20 6 1.5573 -3.5865 0.3828 21 6 2.3538 -3.4931 1.6857 22 6 2.9663 -4.1776 0.4621 23 1 -0.4850 0.8368 0.0737 24 1 -1.3216 -2.9843 -3.6599 25 1 -1.8253 -5.5787 -3.8222 26 1 0.3666 -7.6093 -2.5005 27 1 0.7199 -4.2838 0.3533 28 1 2.7481 -2.5162 1.9655 29 1 2.0405 -4.1288 2.5139 30 1 3.0558 -5.2637 0.4852 31 1 3.7631 -3.6512 -0.0632 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611412184.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:50 Heat of formation + Delta-G solvation = 12.821132 kcal Electronic energy + Delta-G solvation = -21138.381162 eV Core-core repulsion = 17481.316443 eV Total energy + Delta-G solvation = -3657.064719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.48651 -47.58628 -42.13096 -38.26803 -35.90058 -32.90449 -32.36630 -30.97995 -30.22059 -26.65065 -24.92273 -22.47013 -21.50320 -21.34276 -20.67658 -19.36686 -18.36019 -18.28227 -17.43043 -16.64128 -15.94693 -15.10000 -14.68545 -14.55009 -14.37823 -13.94961 -13.92118 -13.77357 -13.31345 -13.21216 -12.77850 -12.45594 -12.26902 -11.81012 -11.14831 -10.85924 -10.80873 -10.65149 -10.50499 -10.14859 -9.83233 -9.42786 -8.85698 -8.81372 -8.74869 -8.15058 -6.99062 -6.09847 -3.84672 1.88451 2.11757 2.72805 3.32012 3.33073 3.41116 3.43931 3.93335 4.26670 4.28590 4.58476 4.80699 4.94093 5.02642 5.24254 5.42279 5.64641 5.87390 5.95931 6.01178 6.17810 6.30115 6.38764 6.54864 6.74720 6.85350 7.01329 7.13841 7.62775 8.18401 8.32154 9.04339 9.17278 9.64071 10.28792 10.97545 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.006276 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.224565 B = 4460.537181 C = 5218.741166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.282 1.282 5 H -0.270 1.270 6 H -0.283 1.283 7 C -0.348 4.348 8 H 0.083 0.917 9 N -0.404 5.404 10 C 0.543 3.457 11 O -0.523 6.523 12 C 0.046 3.954 13 C -0.177 4.177 14 C -0.017 4.017 15 N -0.370 5.370 16 C 0.507 3.493 17 F -0.171 7.171 18 F -0.182 7.182 19 N -0.262 5.262 20 C 0.084 3.916 21 C -0.181 4.181 22 C -0.199 4.199 23 H 0.266 0.734 24 H 0.163 0.837 25 H 0.179 0.821 26 H 0.156 0.844 27 H 0.122 0.878 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -14.324 -3.753 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.140 4.140 3 Si 0.741 3.259 4 H -0.208 1.208 5 H -0.195 1.195 6 H -0.209 1.209 7 C -0.475 4.475 8 H 0.100 0.900 9 N -0.123 5.123 10 C 0.329 3.671 11 O -0.399 6.399 12 C -0.118 4.118 13 C -0.204 4.204 14 C -0.157 4.157 15 N -0.167 5.167 16 C 0.373 3.627 17 F -0.152 7.152 18 F -0.163 7.163 19 N -0.093 5.093 20 C -0.022 4.022 21 C -0.219 4.219 22 C -0.238 4.238 23 H 0.076 0.924 24 H 0.180 0.820 25 H 0.197 0.803 26 H 0.172 0.828 27 H 0.139 0.861 28 H 0.123 0.877 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.486 -14.416 -3.286 14.794 hybrid contribution -0.380 0.941 -0.396 1.089 sum -0.865 -13.475 -3.682 13.996 Atomic orbital electron populations 1.69852 1.06704 1.27620 1.41169 1.25300 0.94813 0.99507 0.94334 0.86175 0.79838 0.82161 0.77704 1.20788 1.19493 1.20856 1.18919 0.95218 0.83892 1.49518 0.89976 1.42603 1.43106 1.07073 1.19546 1.16555 0.83927 0.84574 0.82060 1.90645 1.60723 1.30782 1.57738 1.23157 0.99338 0.92242 0.97068 1.21899 1.01896 0.95119 1.01521 1.22668 1.01815 0.93743 0.97460 1.46733 1.35681 1.07101 1.27148 1.21313 0.83815 0.77541 0.80037 1.93136 1.94039 1.93554 1.34482 1.93113 1.46800 1.84412 1.92023 1.73958 1.17625 0.98611 1.19150 1.22003 0.94018 0.90620 0.95567 1.23116 1.05140 1.02390 0.91265 1.23163 0.99020 0.98556 1.03051 0.92417 0.81979 0.80343 0.82754 0.86078 0.87680 0.89985 0.90016 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.68 11.66 55.50 0.65 -24.03 16 2 C 0.07 2.06 4.35 -17.45 -0.08 1.98 16 3 Si 0.91 21.94 29.60 -169.99 -5.03 16.91 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.35 -9.72 7.88 -14.99 -0.12 -9.84 16 8 H 0.08 2.20 7.34 -52.49 -0.39 1.81 16 9 N -0.40 -10.74 2.83 -108.87 -0.31 -11.05 16 10 C 0.54 14.75 7.07 -12.44 -0.09 14.66 16 11 O -0.52 -15.89 14.47 5.27 0.08 -15.82 16 12 C 0.05 1.03 6.82 -82.77 -0.56 0.47 16 13 C -0.18 -3.25 10.81 -39.35 -0.43 -3.67 16 14 C -0.02 -0.25 10.98 -17.17 -0.19 -0.44 16 15 N -0.37 -5.60 3.68 -66.62 -0.24 -5.84 16 16 C 0.51 5.35 6.56 59.85 0.39 5.75 16 17 F -0.17 -2.19 17.26 2.25 0.04 -2.15 16 18 F -0.18 -1.84 16.96 2.25 0.04 -1.80 16 19 N -0.26 -5.06 8.38 33.41 0.28 -4.78 16 20 C 0.08 1.88 5.25 -67.93 -0.36 1.52 16 21 C -0.18 -3.58 9.80 -26.73 -0.26 -3.84 16 22 C -0.20 -3.77 10.33 -26.73 -0.28 -4.05 16 23 H 0.27 7.57 8.32 -40.82 -0.34 7.24 16 24 H 0.16 2.83 8.06 -52.48 -0.42 2.41 16 25 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 26 H 0.16 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.12 2.70 5.80 -51.93 -0.30 2.40 16 28 H 0.10 2.22 6.77 -51.93 -0.35 1.87 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 282.92 15.07 4.26 4.26 Total: -1.00 -34.62 282.92 -4.91 -39.53 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -2.71 Total: 2.24 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -1.96 Total: 2.54 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.37 Total: -45.71 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.08 Total: -15.82 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.08 Total: -3.95 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.62 -4.91 -39.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611412184.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.354 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds