Wall clock time and date at job start Mon Mar 30 2020 00:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86793 * 120.00222 * 2 1 4 4 H 1.48493 * 109.47331 * 89.99634 * 3 2 1 5 5 H 1.48500 * 109.47202 * 209.99609 * 3 2 1 6 6 H 1.48504 * 109.47147 * 329.99845 * 3 2 1 7 7 C 1.39024 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99747 * 199.40643 * 7 2 1 9 9 N 1.36912 * 119.99834 * 19.41123 * 7 2 1 10 10 C 1.34777 * 120.00343 * 44.26063 * 9 7 2 11 11 O 1.21605 * 119.99533 * 355.22895 * 10 9 7 12 12 C 1.47602 * 120.00253 * 175.23487 * 10 9 7 13 13 C 1.41546 * 126.52732 * 174.12535 * 12 10 9 14 14 C 1.35345 * 105.50713 * 179.97438 * 13 12 10 15 15 N 1.35053 * 107.23692 * 359.97438 * 14 13 12 16 16 C 1.46505 * 124.87733 * 180.02562 * 15 14 13 17 17 F 1.39898 * 109.46992 * 210.00567 * 16 15 14 18 18 F 1.39903 * 109.47229 * 330.00496 * 16 15 14 19 19 N 1.28467 * 110.24377 * 359.75403 * 15 14 13 20 20 C 1.46501 * 119.99664 * 224.25072 * 9 7 2 21 21 C 1.53000 * 117.50227 * 5.05752 * 20 9 7 22 22 C 1.53003 * 60.00101 * 252.50836 * 21 20 9 23 23 H 0.97000 * 119.99880 * 354.96383 * 1 2 3 24 24 H 1.08008 * 127.24380 * 359.97438 * 13 12 10 25 25 H 1.08000 * 126.38024 * 180.02562 * 14 13 12 26 26 H 1.09000 * 109.46915 * 90.00624 * 16 15 14 27 27 H 1.09004 * 115.54982 * 150.76258 * 20 9 7 28 28 H 1.09002 * 117.49241 * 359.97438 * 21 20 9 29 29 H 1.08994 * 117.50346 * 145.01711 * 21 20 9 30 30 H 1.09000 * 117.49716 * 252.51192 * 22 21 20 31 31 H 1.09001 * 117.51806 * 107.47552 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6176 0.0000 4 1 2.4953 2.0464 1.4000 5 1 3.5454 1.4400 -0.7000 6 1 1.4453 2.6526 -0.7001 7 6 2.0088 -1.2040 0.0005 8 1 3.0428 -1.2305 0.3113 9 7 1.3825 -2.3561 -0.3930 10 6 0.6054 -2.3584 -1.4942 11 8 0.3903 -1.3196 -2.0887 12 6 0.0153 -3.6217 -1.9785 13 6 -0.9076 -3.7673 -3.0417 14 6 -1.1621 -5.0943 -3.1208 15 7 -0.4315 -5.6999 -2.1599 16 6 -0.4162 -7.1421 -1.9030 17 9 -0.1663 -7.3714 -0.5457 18 9 -1.6562 -7.6904 -2.2480 19 7 0.2526 -4.8301 -1.5072 20 6 1.5573 -3.5865 0.3828 21 6 2.3538 -3.4931 1.6857 22 6 2.9663 -4.1776 0.4621 23 1 -0.4850 0.8368 0.0737 24 1 -1.3216 -2.9843 -3.6599 25 1 -1.8253 -5.5787 -3.8222 26 1 0.3666 -7.6093 -2.5005 27 1 0.7199 -4.2838 0.3533 28 1 2.7481 -2.5162 1.9655 29 1 2.0405 -4.1288 2.5139 30 1 3.0558 -5.2637 0.4852 31 1 3.7631 -3.6512 -0.0632 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611412184.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:50 Heat of formation + Delta-G solvation = -10.997474 kcal Electronic energy + Delta-G solvation = -21139.414014 eV Core-core repulsion = 17481.316443 eV Total energy + Delta-G solvation = -3658.097571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.34415 -48.45758 -43.49825 -40.16324 -37.74073 -34.84788 -33.82539 -32.81514 -31.68270 -28.13821 -26.59910 -24.10022 -23.05992 -22.79739 -22.18264 -21.10582 -19.53248 -19.18314 -18.59339 -18.17543 -17.77939 -16.72661 -16.45434 -16.04512 -15.61035 -15.29126 -15.20403 -15.04226 -14.78315 -14.67159 -14.28658 -13.99107 -13.72603 -13.20032 -13.02991 -12.84364 -12.70776 -12.26191 -12.17329 -11.91952 -11.60989 -11.06591 -10.78435 -10.32278 -10.16431 -10.14608 -9.00934 -8.21027 -6.01017 0.59207 0.97038 1.24322 1.38944 1.46514 1.54126 2.30887 2.57404 2.75919 2.90696 3.07685 3.12709 3.43825 3.58494 3.84462 3.86096 4.15870 4.26209 4.37191 4.54360 4.74087 4.77767 4.87826 5.01363 5.21099 5.43328 5.45481 5.49642 5.65813 6.18756 6.77005 6.97986 7.18019 7.61204 8.27489 8.86875 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.006276 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.224565 B = 4460.537181 C = 5218.741166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.020 3.980 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.290 1.290 7 C -0.364 4.364 8 H 0.086 0.914 9 N -0.421 5.421 10 C 0.530 3.470 11 O -0.576 6.576 12 C 0.002 3.998 13 C -0.207 4.207 14 C 0.023 3.977 15 N -0.363 5.363 16 C 0.502 3.498 17 F -0.184 7.184 18 F -0.175 7.175 19 N -0.262 5.262 20 C 0.053 3.947 21 C -0.174 4.174 22 C -0.169 4.169 23 H 0.262 0.738 24 H 0.158 0.842 25 H 0.234 0.766 26 H 0.215 0.785 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.311 -17.254 -4.044 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.187 4.187 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.216 1.216 7 C -0.491 4.491 8 H 0.104 0.896 9 N -0.139 5.139 10 C 0.317 3.683 11 O -0.456 6.456 12 C -0.161 4.161 13 C -0.235 4.235 14 C -0.118 4.118 15 N -0.160 5.160 16 C 0.372 3.628 17 F -0.166 7.166 18 F -0.157 7.157 19 N -0.096 5.096 20 C -0.052 4.052 21 C -0.212 4.212 22 C -0.208 4.208 23 H 0.071 0.929 24 H 0.176 0.824 25 H 0.250 0.750 26 H 0.231 0.769 27 H 0.139 0.861 28 H 0.105 0.895 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.001 -17.394 -3.530 17.748 hybrid contribution -0.565 1.603 -0.338 1.733 sum -0.567 -15.790 -3.868 16.267 Atomic orbital electron populations 1.69979 1.08395 1.27993 1.43548 1.26212 0.95528 1.03003 0.93933 0.85196 0.78318 0.77687 0.78576 1.18590 1.18974 1.21641 1.19209 0.95575 0.85067 1.49237 0.89648 1.42826 1.42988 1.08054 1.20047 1.17250 0.83425 0.85876 0.81718 1.90571 1.62544 1.33223 1.59257 1.22548 1.02176 0.91630 0.99700 1.22020 1.02600 0.97404 1.01502 1.23260 0.99966 0.92021 0.96514 1.47297 1.33966 1.08645 1.26053 1.22303 0.85408 0.75038 0.80097 1.93115 1.94145 1.93313 1.35982 1.93136 1.46925 1.83762 1.91828 1.73789 1.18217 0.98162 1.19395 1.22129 0.95953 0.89726 0.97370 1.23176 1.04035 1.02287 0.91705 1.23153 0.96081 1.00233 1.01307 0.92862 0.82406 0.74980 0.76879 0.86092 0.89537 0.86966 0.86552 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -54.58 11.66 21.68 0.25 -54.33 16 2 C 0.02 1.20 4.35 84.95 0.37 1.57 16 3 Si 0.98 46.51 29.60 68.60 2.03 48.54 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 7 C -0.36 -20.99 7.88 84.09 0.66 -20.33 16 8 H 0.09 4.69 7.34 -2.91 -0.02 4.67 16 9 N -0.42 -23.12 2.83 -616.61 -1.75 -24.86 16 10 C 0.53 30.12 7.07 86.71 0.61 30.73 16 11 O -0.58 -37.14 14.47 -4.05 -0.06 -37.20 16 12 C 0.00 0.08 6.82 42.43 0.29 0.37 16 13 C -0.21 -7.59 10.81 22.42 0.24 -7.35 16 14 C 0.02 0.58 10.98 83.53 0.92 1.50 16 15 N -0.36 -9.74 3.68 -364.68 -1.34 -11.08 16 16 C 0.50 8.22 6.56 127.77 0.84 9.06 16 17 F -0.18 -4.05 17.26 44.97 0.78 -3.28 16 18 F -0.18 -2.68 16.96 44.97 0.76 -1.92 16 19 N -0.26 -9.79 8.38 -48.20 -0.40 -10.19 16 20 C 0.05 2.38 5.25 44.99 0.24 2.62 16 21 C -0.17 -6.69 9.80 30.60 0.30 -6.39 16 22 C -0.17 -6.12 10.33 30.60 0.32 -5.80 16 23 H 0.26 15.76 8.32 -92.71 -0.77 14.99 16 24 H 0.16 5.71 8.06 -2.91 -0.02 5.69 16 25 H 0.23 3.21 8.06 -2.91 -0.02 3.18 16 26 H 0.22 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.12 5.36 5.80 -2.38 -0.01 5.34 16 28 H 0.09 3.65 6.77 -2.39 -0.02 3.64 16 29 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 30 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -81.56 282.92 6.23 -75.33 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.17 Total: 13.02 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 4.78 Total: 5.97 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -3.24 Total: -100.47 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.06 Total: -37.20 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 1.54 Total: -5.20 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -81.56 6.23 -75.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611412184.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.332 kcal (2) G-P(sol) polarization free energy of solvation -81.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds