Wall clock time and date at job start Mon Mar 30 2020 01:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47341 * 2 1 4 4 H 1.09000 * 109.47297 * 304.99874 * 3 2 1 5 5 C 1.50696 * 109.47129 * 184.99580 * 3 2 1 6 6 H 1.08000 * 120.00756 * 239.99717 * 5 3 2 7 7 C 1.37881 * 119.99791 * 60.00357 * 5 3 2 8 8 N 1.31517 * 120.00115 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99963 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47252 * 59.99776 * 9 7 5 11 11 H 1.48504 * 109.47009 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47040 * 299.99347 * 9 7 5 13 13 N 1.46497 * 109.47136 * 64.99887 * 3 2 1 14 14 C 1.34776 * 120.00077 * 274.99986 * 13 3 2 15 15 O 1.21693 * 120.00064 * 354.72815 * 14 13 3 16 16 C 1.46664 * 120.00022 * 174.72868 * 14 13 3 17 17 C 1.36676 * 126.84301 * 5.00270 * 16 14 13 18 18 N 1.33296 * 107.83075 * 179.83359 * 17 16 14 19 19 C 1.31029 * 109.70401 * 0.43881 * 18 17 16 20 20 Cl 1.73599 * 125.43282 * 179.69121 * 19 18 17 21 21 N 1.34599 * 109.12806 * 359.72523 * 19 18 17 22 22 C 1.46500 * 126.48763 * 179.97438 * 21 19 18 23 23 H 1.09000 * 109.46868 * 59.99911 * 1 2 3 24 24 H 1.08998 * 109.47015 * 300.00161 * 1 2 3 25 25 H 1.09004 * 109.47389 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46868 * 120.00089 * 2 1 3 27 27 H 1.08998 * 109.47015 * 239.99838 * 2 1 3 28 28 H 0.96992 * 119.99948 * 180.02562 * 8 7 5 29 29 H 0.97005 * 120.00133 * 94.99627 * 13 3 2 30 30 H 1.08000 * 126.08321 * 359.97435 * 17 16 14 31 31 H 1.08998 * 109.46978 * 274.94492 * 22 21 19 32 32 H 1.08999 * 109.47024 * 34.94538 * 22 21 19 33 33 H 1.08997 * 109.46831 * 154.94605 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0050 0.8810 -1.3817 10 1 6.5975 0.1471 -0.2348 11 1 6.3979 0.2164 -2.6502 12 1 6.4995 2.2813 -1.3821 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3051 2.7172 0.4025 16 6 0.0028 3.2177 2.6545 17 6 0.7491 3.3195 3.7949 18 7 -0.0135 3.8806 4.7331 19 6 -1.2039 4.1286 4.2449 20 17 -2.5200 4.8487 5.1183 21 7 -1.2436 3.7351 2.9583 22 6 -2.3900 3.8353 2.0516 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.8293 -0.0619 -2.9494 29 1 2.2719 2.1230 1.9978 30 1 1.7751 3.0038 3.9140 31 1 -3.0359 2.9675 2.1854 32 1 -2.9506 4.7433 2.2738 33 1 -2.0363 3.8695 1.0212 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696474471.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:00 Heat of formation + Delta-G solvation = -4.677474 kcal Electronic energy + Delta-G solvation = -18755.922952 eV Core-core repulsion = 15649.896117 eV Total energy + Delta-G solvation = -3106.026835 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.38054 -40.41837 -38.12847 -37.01535 -35.32507 -34.30496 -33.01247 -30.87156 -28.77247 -28.20720 -25.31933 -24.12871 -22.70686 -21.62712 -21.12357 -19.43825 -18.27711 -17.41006 -17.28307 -17.15569 -16.29310 -16.04101 -15.72121 -15.22439 -14.69660 -14.55680 -14.21941 -13.97260 -13.77474 -13.47652 -13.15812 -12.91828 -12.87881 -12.69613 -12.63022 -12.17243 -12.06926 -11.61192 -11.53975 -11.06244 -10.98471 -10.85343 -10.50539 -9.86298 -9.55924 -8.13747 -6.30274 0.04784 0.09392 1.49032 1.49974 1.51487 1.56455 1.59608 2.30404 2.37802 2.59989 3.16652 3.53976 3.70042 3.88996 4.22967 4.26695 4.50430 4.54981 4.56391 4.73404 4.87254 5.07155 5.22257 5.26336 5.42140 5.52094 5.58085 5.62098 5.80084 5.90774 6.17558 6.46159 6.75532 6.88116 7.30898 7.46539 8.91348 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035349 B = 0.004444 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.900896 B = 6298.769279 C = 6789.298562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.282 3.718 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.074 0.926 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.686 5.686 14 C 0.583 3.417 15 O -0.579 6.579 16 C -0.077 4.077 17 C 0.051 3.949 18 N -0.490 5.490 19 C 0.253 3.747 20 Cl 0.064 6.936 21 N -0.415 5.415 22 C 0.055 3.945 23 H 0.030 0.970 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.265 0.735 29 H 0.406 0.594 30 H 0.213 0.787 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.274 5.807 11.944 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.179 3.821 4 H 0.025 0.975 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.334 5.334 14 C 0.369 3.631 15 O -0.461 6.461 16 C -0.194 4.194 17 C -0.103 4.103 18 N -0.212 5.212 19 C -0.034 4.034 20 Cl 0.091 6.909 21 N -0.098 5.098 22 C -0.085 4.085 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.230 0.770 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.822 5.976 11.817 16.488 hybrid contribution 0.616 -0.151 -0.896 1.098 sum -9.206 5.825 10.922 15.426 Atomic orbital electron populations 1.21656 0.97072 0.99407 0.99987 1.21806 0.93700 0.98992 1.01636 1.18454 0.93832 0.89111 0.80702 0.97524 1.21537 0.91287 1.39070 1.06814 0.90805 1.25692 1.03006 0.94365 0.95024 1.70021 1.37039 1.38246 1.09852 0.85471 0.79438 0.78383 0.77492 1.18947 1.21393 1.19787 1.45951 1.14226 1.54993 1.18274 1.16897 0.82672 0.77971 0.85523 1.90739 1.54870 1.60315 1.40219 1.20911 0.87690 1.12718 0.98076 1.23117 1.00972 0.99538 0.86676 1.70066 1.00558 1.18720 1.31861 1.23470 0.93020 1.04285 0.82592 1.98423 1.40191 1.79868 1.72405 1.45180 1.11714 1.42902 1.10039 1.22605 0.85854 1.05520 0.94528 0.95118 0.94295 0.93422 0.93848 0.90665 0.92599 0.75794 0.77015 0.88421 0.86695 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.58 71.98 0.62 -4.62 16 2 C -0.12 -5.72 5.45 30.59 0.17 -5.55 16 3 C 0.28 13.68 2.25 44.24 0.10 13.78 16 4 H 0.01 0.40 7.51 -2.39 -0.02 0.38 16 5 C -0.55 -27.73 8.73 25.60 0.22 -27.50 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 1.01 5.29 84.66 0.45 1.46 16 8 N -0.91 -50.40 11.29 21.45 0.24 -50.16 16 9 Si 0.97 40.79 29.54 68.60 2.03 42.82 16 10 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 11 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 13 N -0.69 -26.85 5.01 -450.11 -2.25 -29.10 16 14 C 0.58 22.24 6.15 86.44 0.53 22.77 16 15 O -0.58 -25.35 12.34 -4.33 -0.05 -25.41 16 16 C -0.08 -2.41 6.91 39.95 0.28 -2.14 16 17 C 0.05 1.42 11.37 84.10 0.96 2.38 16 18 N -0.49 -14.08 11.21 -190.25 -2.13 -16.21 16 19 C 0.25 6.60 8.48 180.25 1.53 8.13 16 20 Cl 0.06 1.21 28.85 -2.72 -0.08 1.14 16 21 N -0.41 -11.42 3.18 -528.38 -1.68 -13.10 16 22 C 0.06 1.22 10.64 127.77 1.36 2.58 16 23 H 0.03 1.39 7.92 -2.39 -0.02 1.37 16 24 H 0.04 1.58 5.76 -2.39 -0.01 1.57 16 25 H 0.05 1.77 8.14 -2.38 -0.02 1.76 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 3.96 5.95 -2.39 -0.01 3.95 16 28 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 29 H 0.41 13.35 7.48 -92.70 -0.69 12.66 16 30 H 0.21 4.56 7.46 -2.91 -0.02 4.54 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.11 1.79 7.94 -2.39 -0.02 1.77 16 33 H 0.10 2.65 6.15 -2.39 -0.01 2.64 16 Total: -1.00 -62.48 293.21 2.73 -59.74 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.46 Total: 19.00 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 6.21 Total: 11.28 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -5.82 Total: -108.57 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.41 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 17 Polarization: 1.21 SS G_CDS: -0.08 Total: 1.14 kcal Total: -62.48 2.73 -59.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696474471.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.065 kcal (2) G-P(sol) polarization free energy of solvation -62.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds