Wall clock time and date at job start Mon Mar 30 2020 01:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46904 * 2 1 4 4 H 1.09000 * 109.46690 * 55.00056 * 3 2 1 5 5 C 1.50698 * 109.46946 * 175.00080 * 3 2 1 6 6 H 1.07999 * 120.00050 * 119.99951 * 5 3 2 7 7 C 1.37873 * 120.00163 * 299.99621 * 5 3 2 8 8 N 1.31520 * 119.99905 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00152 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47218 * 60.00059 * 9 7 5 11 11 H 1.48501 * 109.46973 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46874 * 299.99935 * 9 7 5 13 13 N 1.46496 * 109.46922 * 295.00112 * 3 2 1 14 14 C 1.34780 * 120.00137 * 85.00211 * 13 3 2 15 15 O 1.21692 * 120.00078 * 355.66729 * 14 13 3 16 16 C 1.46660 * 119.99905 * 175.66727 * 14 13 3 17 17 C 1.36679 * 126.84479 * 4.99917 * 16 14 13 18 18 N 1.33292 * 107.82918 * 179.97438 * 17 16 14 19 19 C 1.31028 * 109.70982 * 359.97438 * 18 17 16 20 20 Cl 1.73600 * 125.43766 * 179.97438 * 19 18 17 21 21 N 1.34603 * 109.12469 * 359.74865 * 19 18 17 22 22 C 1.46497 * 126.48937 * 180.28136 * 21 19 18 23 23 H 1.08999 * 109.47474 * 59.99775 * 1 2 3 24 24 H 1.09004 * 109.46838 * 299.99903 * 1 2 3 25 25 H 1.08998 * 109.46728 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47218 * 119.99737 * 2 1 3 27 27 H 1.08995 * 109.47210 * 240.00547 * 2 1 3 28 28 H 0.97000 * 120.00265 * 180.02562 * 8 7 5 29 29 H 0.97003 * 119.99965 * 264.99569 * 13 3 2 30 30 H 1.07997 * 126.08028 * 359.94117 * 17 16 14 31 31 H 1.08999 * 109.47337 * 275.02914 * 22 21 19 32 32 H 1.09001 * 109.47124 * 35.02809 * 22 21 19 33 33 H 1.09005 * 109.47284 * 155.02655 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8786 1.2279 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8815 1.3817 10 1 6.4994 2.2817 1.3820 11 1 6.3978 0.2170 2.6503 12 1 6.5975 0.1474 0.2348 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3710 2.5642 -0.4608 16 6 0.0818 3.4021 -2.5843 17 6 0.8357 3.5212 -3.7182 18 7 0.1542 4.2710 -4.5844 19 6 -0.9894 4.6292 -4.0546 20 17 -2.1934 5.6115 -4.8286 21 7 -1.0837 4.1100 -2.8164 22 6 -2.2066 4.2676 -1.8888 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 3.8293 -0.0609 2.9499 29 1 2.2719 2.1232 -1.9978 30 1 1.8102 3.0859 -3.8827 31 1 -2.0914 5.1984 -1.3335 32 1 -3.1407 4.2926 -2.4501 33 1 -2.2234 3.4289 -1.1927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696474472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:02 Heat of formation + Delta-G solvation = 14.887169 kcal Electronic energy + Delta-G solvation = -18745.904871 eV Core-core repulsion = 15640.726422 eV Total energy + Delta-G solvation = -3105.178448 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.22001 -38.86456 -37.14171 -35.27333 -34.14377 -32.53980 -31.28217 -29.46450 -27.19553 -26.93778 -23.59391 -22.63178 -21.49704 -20.07675 -19.45732 -18.07131 -16.76949 -16.25354 -15.68164 -15.49034 -14.80345 -14.50655 -14.35797 -13.88690 -13.31318 -13.21941 -12.81729 -12.71589 -12.21911 -11.86462 -11.76151 -11.58324 -11.30068 -11.05303 -10.86942 -10.44301 -10.33641 -10.24912 -9.87388 -9.67409 -9.30454 -9.13289 -8.55837 -8.55741 -7.95348 -6.17955 -4.27911 1.10915 1.31405 2.67541 2.69713 3.23725 3.29230 3.30422 3.72636 3.92375 4.32072 4.67651 4.71773 5.11859 5.13862 5.20059 5.37939 5.52084 5.97937 6.33939 6.35667 6.41245 6.59467 6.65878 6.98830 7.11260 7.23498 7.32096 7.53565 7.60764 7.66333 7.81407 8.10018 8.49304 8.66506 8.92293 9.39282 10.87319 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033205 B = 0.004480 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.031610 B = 6248.613737 C = 6768.615394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.274 3.726 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.687 5.687 14 C 0.577 3.423 15 O -0.547 6.547 16 C -0.048 4.048 17 C 0.035 3.965 18 N -0.470 5.470 19 C 0.247 3.753 20 Cl 0.032 6.968 21 N -0.413 5.413 22 C 0.059 3.941 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.022 0.978 26 H 0.101 0.899 27 H 0.033 0.967 28 H 0.266 0.734 29 H 0.392 0.608 30 H 0.189 0.811 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.891 6.463 -9.657 14.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.069 0.931 5 C -0.576 4.576 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.334 5.334 14 C 0.361 3.639 15 O -0.428 6.428 16 C -0.166 4.166 17 C -0.118 4.118 18 N -0.191 5.191 19 C -0.040 4.040 20 Cl 0.060 6.940 21 N -0.097 5.097 22 C -0.082 4.082 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.119 0.881 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.225 0.775 30 H 0.206 0.794 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.429 6.612 -9.501 14.930 hybrid contribution 0.783 -0.039 0.400 0.880 sum -8.646 6.573 -9.101 14.170 Atomic orbital electron populations 1.21867 0.98281 0.98025 1.01263 1.21956 0.92677 0.99574 1.02523 1.18887 0.94430 0.89269 0.80113 0.93128 1.21171 0.90428 1.39428 1.06525 0.91896 1.24868 0.98718 0.94638 0.95294 1.69879 1.35334 1.37361 1.09331 0.86490 0.84643 0.78381 0.77509 1.20132 1.21139 1.20061 1.46276 1.13429 1.54806 1.18913 1.16664 0.83671 0.79437 0.84101 1.90756 1.49270 1.61928 1.40826 1.21376 0.89073 1.05943 1.00244 1.22675 1.00456 0.99852 0.88838 1.69996 1.02550 1.15458 1.31126 1.23106 0.94222 1.02120 0.84508 1.98406 1.50925 1.66145 1.78544 1.45034 1.15635 1.36536 1.12507 1.22451 0.86130 1.06188 0.93462 0.94192 0.93165 0.95906 0.88120 0.94807 0.92423 0.77461 0.79371 0.89819 0.89654 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.46 37.16 0.31 -2.61 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.52 2.24 -69.08 -0.15 6.36 16 4 H 0.05 1.39 7.64 -51.93 -0.40 0.99 16 5 C -0.54 -13.53 8.73 -34.44 -0.30 -13.83 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.82 11.29 55.43 0.63 -23.19 16 9 Si 0.90 19.99 29.54 -169.99 -5.02 14.96 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.69 -13.43 5.01 -56.25 -0.28 -13.71 16 14 C 0.58 10.94 6.50 -12.86 -0.08 10.85 16 15 O -0.55 -11.57 11.57 5.20 0.06 -11.51 16 16 C -0.05 -0.79 6.91 -82.10 -0.57 -1.35 16 17 C 0.04 0.52 11.37 -17.48 -0.20 0.33 16 18 N -0.47 -7.27 11.21 -11.49 -0.13 -7.40 16 19 C 0.25 3.50 8.48 -90.33 -0.77 2.73 16 20 Cl 0.03 0.35 28.85 -51.86 -1.50 -1.14 16 21 N -0.41 -6.00 3.18 -118.36 -0.38 -6.37 16 22 C 0.06 0.69 10.63 59.85 0.64 1.32 16 23 H 0.04 0.83 5.54 -51.93 -0.29 0.54 16 24 H 0.05 1.13 7.80 -51.93 -0.40 0.73 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.39 6.62 7.48 -40.82 -0.31 6.32 16 30 H 0.19 2.25 7.46 -52.49 -0.39 1.86 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.76 7.95 -51.93 -0.41 0.34 16 33 H 0.12 1.60 6.16 -51.93 -0.32 1.28 16 LS Contribution 292.49 15.07 4.41 4.41 Total: -1.00 -28.86 292.49 -7.21 -36.06 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.64 Total: 5.54 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.36 Total: 2.35 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.16 Total: -50.68 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.06 Total: -11.51 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.50 Total: -1.14 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.86 -7.21 -36.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696474472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.952 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds