Wall clock time and date at job start Mon Mar 30 2020 01:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46904 * 2 1 4 4 H 1.09000 * 109.46690 * 55.00056 * 3 2 1 5 5 C 1.50698 * 109.46946 * 175.00080 * 3 2 1 6 6 H 1.07999 * 120.00050 * 119.99951 * 5 3 2 7 7 C 1.37873 * 120.00163 * 299.99621 * 5 3 2 8 8 N 1.31520 * 119.99905 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00152 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47218 * 60.00059 * 9 7 5 11 11 H 1.48501 * 109.46973 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46874 * 299.99935 * 9 7 5 13 13 N 1.46496 * 109.46922 * 295.00112 * 3 2 1 14 14 C 1.34780 * 120.00137 * 85.00211 * 13 3 2 15 15 O 1.21692 * 120.00078 * 355.66729 * 14 13 3 16 16 C 1.46660 * 119.99905 * 175.66727 * 14 13 3 17 17 C 1.36679 * 126.84479 * 4.99917 * 16 14 13 18 18 N 1.33292 * 107.82918 * 179.97438 * 17 16 14 19 19 C 1.31028 * 109.70982 * 359.97438 * 18 17 16 20 20 Cl 1.73600 * 125.43766 * 179.97438 * 19 18 17 21 21 N 1.34603 * 109.12469 * 359.74865 * 19 18 17 22 22 C 1.46497 * 126.48937 * 180.28136 * 21 19 18 23 23 H 1.08999 * 109.47474 * 59.99775 * 1 2 3 24 24 H 1.09004 * 109.46838 * 299.99903 * 1 2 3 25 25 H 1.08998 * 109.46728 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47218 * 119.99737 * 2 1 3 27 27 H 1.08995 * 109.47210 * 240.00547 * 2 1 3 28 28 H 0.97000 * 120.00265 * 180.02562 * 8 7 5 29 29 H 0.97003 * 119.99965 * 264.99569 * 13 3 2 30 30 H 1.07997 * 126.08028 * 359.94117 * 17 16 14 31 31 H 1.08999 * 109.47337 * 275.02914 * 22 21 19 32 32 H 1.09001 * 109.47124 * 35.02809 * 22 21 19 33 33 H 1.09005 * 109.47284 * 155.02655 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8786 1.2279 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8815 1.3817 10 1 6.4994 2.2817 1.3820 11 1 6.3978 0.2170 2.6503 12 1 6.5975 0.1474 0.2348 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3710 2.5642 -0.4608 16 6 0.0818 3.4021 -2.5843 17 6 0.8357 3.5212 -3.7182 18 7 0.1542 4.2710 -4.5844 19 6 -0.9894 4.6292 -4.0546 20 17 -2.1934 5.6115 -4.8286 21 7 -1.0837 4.1100 -2.8164 22 6 -2.2066 4.2676 -1.8888 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 3.8293 -0.0609 2.9499 29 1 2.2719 2.1232 -1.9978 30 1 1.8102 3.0859 -3.8827 31 1 -2.0914 5.1984 -1.3335 32 1 -3.1407 4.2926 -2.4501 33 1 -2.2234 3.4289 -1.1927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696474472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:02 Heat of formation + Delta-G solvation = -3.098705 kcal Electronic energy + Delta-G solvation = -18746.684797 eV Core-core repulsion = 15640.726422 eV Total energy + Delta-G solvation = -3105.958374 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.37588 -40.43473 -38.12671 -36.98729 -35.31994 -34.30040 -33.03632 -30.82626 -28.76355 -28.20330 -25.28858 -24.16481 -22.69273 -21.62462 -21.10478 -19.43530 -18.26696 -17.44368 -17.22350 -17.16746 -16.28946 -16.10138 -15.68632 -15.26168 -14.71826 -14.54177 -14.20427 -13.91454 -13.68961 -13.49146 -13.14270 -12.92475 -12.87337 -12.69436 -12.62875 -12.18474 -12.05443 -11.57716 -11.52310 -11.05980 -10.97665 -10.81529 -10.49924 -9.84707 -9.55101 -8.13820 -6.30507 0.05163 0.09790 1.48763 1.50039 1.51782 1.56754 1.59846 2.30107 2.39191 2.60003 3.16581 3.54390 3.70416 3.89498 4.23198 4.27152 4.52897 4.55951 4.60917 4.76860 4.88166 5.09604 5.22999 5.29387 5.45513 5.52970 5.58411 5.62308 5.81170 5.91381 6.18145 6.46584 6.75406 6.88487 7.31011 7.46633 8.91229 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033205 B = 0.004480 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.031610 B = 6248.613737 C = 6768.615394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.284 3.716 4 H 0.005 0.995 5 C -0.549 4.549 6 H 0.074 0.926 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.686 5.686 14 C 0.581 3.419 15 O -0.575 6.575 16 C -0.076 4.076 17 C 0.051 3.949 18 N -0.490 5.490 19 C 0.252 3.748 20 Cl 0.063 6.937 21 N -0.415 5.415 22 C 0.056 3.944 23 H 0.043 0.957 24 H 0.029 0.971 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.265 0.735 29 H 0.406 0.594 30 H 0.213 0.787 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.738 7.145 -11.467 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.181 3.819 4 H 0.023 0.977 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.334 5.334 14 C 0.367 3.633 15 O -0.457 6.457 16 C -0.193 4.193 17 C -0.103 4.103 18 N -0.212 5.212 19 C -0.034 4.034 20 Cl 0.091 6.909 21 N -0.099 5.099 22 C -0.085 4.085 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.230 0.770 31 H 0.114 0.886 32 H 0.133 0.867 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.289 7.310 -11.341 16.381 hybrid contribution 0.617 -0.162 0.903 1.105 sum -8.672 7.148 -10.438 15.338 Atomic orbital electron populations 1.21698 0.96894 0.98973 1.00411 1.21811 0.93823 0.99020 1.01483 1.18448 0.93751 0.89204 0.80488 0.97714 1.21538 0.91267 1.39074 1.06819 0.90771 1.25692 1.03010 0.94348 0.95041 1.70029 1.37046 1.38250 1.09835 0.85469 0.79425 0.78396 0.77485 1.19752 1.21407 1.18962 1.45954 1.14265 1.55089 1.18078 1.16901 0.82898 0.78875 0.84660 1.90746 1.49987 1.62793 1.42158 1.20912 0.90757 1.07958 0.99682 1.23114 1.00900 0.98475 0.87857 1.70059 1.03321 1.16317 1.31538 1.23467 0.94463 1.01261 0.84214 1.98423 1.49511 1.65094 1.77890 1.45184 1.15644 1.36062 1.12969 1.22603 0.86605 1.05866 0.93410 0.93760 0.95208 0.93950 0.90828 0.93965 0.92605 0.75805 0.77022 0.88597 0.86656 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.46 71.98 0.61 -4.65 16 2 C -0.12 -5.76 5.45 30.60 0.17 -5.59 16 3 C 0.28 13.76 2.24 44.25 0.10 13.86 16 4 H 0.00 0.29 7.64 -2.39 -0.02 0.27 16 5 C -0.55 -27.67 8.73 25.60 0.22 -27.44 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 1.01 5.29 84.65 0.45 1.46 16 8 N -0.91 -50.43 11.29 21.45 0.24 -50.18 16 9 Si 0.97 40.76 29.54 68.60 2.03 42.78 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 N -0.69 -26.71 5.01 -450.08 -2.25 -28.96 16 14 C 0.58 22.00 6.50 86.44 0.56 22.56 16 15 O -0.57 -24.81 11.57 -4.32 -0.05 -24.86 16 16 C -0.08 -2.38 6.91 39.95 0.28 -2.10 16 17 C 0.05 1.41 11.37 84.11 0.96 2.36 16 18 N -0.49 -14.11 11.21 -190.25 -2.13 -16.24 16 19 C 0.25 6.60 8.48 180.25 1.53 8.13 16 20 Cl 0.06 1.21 28.85 -2.72 -0.08 1.13 16 21 N -0.42 -11.41 3.18 -528.37 -1.68 -13.09 16 22 C 0.06 1.22 10.63 127.77 1.36 2.58 16 23 H 0.04 1.84 5.54 -2.39 -0.01 1.83 16 24 H 0.03 1.36 7.80 -2.38 -0.02 1.35 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 3.90 5.95 -2.39 -0.01 3.89 16 27 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 29 H 0.41 13.30 7.48 -92.71 -0.69 12.61 16 30 H 0.21 4.55 7.46 -2.91 -0.02 4.53 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.12 1.77 7.95 -2.39 -0.02 1.75 16 33 H 0.10 2.65 6.16 -2.38 -0.01 2.63 16 Total: -1.00 -62.19 292.49 2.76 -59.43 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.46 Total: 18.83 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 6.23 Total: 11.16 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -5.82 Total: -108.48 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.05 Total: -24.86 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.78 kcal Atomic # 17 Polarization: 1.21 SS G_CDS: -0.08 Total: 1.13 kcal Total: -62.19 2.76 -59.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696474472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.329 kcal (2) G-P(sol) polarization free energy of solvation -62.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds