Wall clock time and date at job start Mon Mar 30 2020 01:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47053 * 2 1 4 4 C 1.46503 * 120.00043 * 96.36763 * 3 2 1 5 5 C 1.50699 * 109.46929 * 89.99942 * 4 3 2 6 6 H 1.07995 * 120.00137 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99617 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00451 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99842 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46830 * 59.99618 * 9 7 5 11 11 H 1.48496 * 109.46847 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47005 * 299.99752 * 9 7 5 13 13 C 1.34781 * 119.99959 * 276.36515 * 3 2 1 14 14 O 1.21691 * 119.99912 * 183.20984 * 13 3 2 15 15 C 1.46657 * 119.99898 * 3.21599 * 13 3 2 16 16 C 1.36681 * 126.84565 * 7.79120 * 15 13 3 17 17 N 1.33294 * 107.83365 * 179.97438 * 16 15 13 18 18 C 1.31025 * 109.70421 * 0.02562 * 17 16 15 19 19 Cl 1.73603 * 125.43745 * 179.97438 * 18 17 16 20 20 N 1.34597 * 109.12856 * 359.75769 * 18 17 16 21 21 C 1.46506 * 126.49427 * 180.26282 * 20 18 17 22 22 H 1.08995 * 109.47448 * 171.84043 * 1 2 3 23 23 H 1.09003 * 109.47143 * 291.83935 * 1 2 3 24 24 H 1.09007 * 109.47294 * 51.83814 * 1 2 3 25 25 H 1.08996 * 109.47042 * 120.00067 * 2 1 3 26 26 H 1.08996 * 109.46996 * 240.00042 * 2 1 3 27 27 H 1.09000 * 109.46794 * 209.99829 * 4 3 2 28 28 H 1.08999 * 109.46570 * 329.99687 * 4 3 2 29 29 H 0.96998 * 120.00209 * 180.02562 * 8 7 5 30 30 H 1.08001 * 126.07973 * 359.96826 * 16 15 13 31 31 H 1.09002 * 109.47070 * 274.17331 * 21 20 18 32 32 H 1.09004 * 109.46537 * 34.17019 * 21 20 18 33 33 H 1.08998 * 109.47547 * 154.17259 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3951 2.0250 1.2609 5 6 3.8556 1.7750 1.5356 6 1 4.4442 1.1943 0.8408 7 6 4.4402 2.2867 2.6747 8 7 3.7234 2.9934 3.5211 9 14 6.2505 1.9763 3.0156 10 1 7.0661 2.5392 1.9097 11 1 6.6324 2.6289 4.2937 12 1 6.4920 0.5144 3.1143 13 6 2.1209 2.0597 -1.1600 14 8 2.5813 3.1862 -1.1674 15 6 1.6777 1.4405 -2.4134 16 6 1.0097 0.2560 -2.5510 17 7 0.7951 0.0570 -3.8514 18 6 1.2939 1.0545 -4.5392 19 17 1.2430 1.2105 -6.2674 20 7 1.8479 1.9412 -3.6916 21 6 2.5082 3.1978 -4.0541 22 1 -0.3634 -1.0172 -0.1458 23 1 -0.3633 0.3823 0.9539 24 1 -0.3634 0.6350 -0.8081 25 1 1.8933 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.2175 3.0979 1.1883 28 1 1.7967 1.6117 2.0728 29 1 4.1348 3.3537 4.3222 30 1 0.7093 -0.4017 -1.7487 31 1 3.5551 3.0038 -4.2878 32 1 2.0152 3.6289 -4.9254 33 1 2.4456 3.8953 -3.2189 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696474490.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:32 Heat of formation + Delta-G solvation = 27.646363 kcal Electronic energy + Delta-G solvation = -18955.519457 eV Core-core repulsion = 15850.894289 eV Total energy + Delta-G solvation = -3104.625168 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.52049 -40.44951 -38.13886 -37.45615 -35.28902 -34.90284 -32.36777 -30.92016 -28.92789 -28.18614 -25.45945 -24.51254 -23.28868 -22.48554 -20.39474 -18.70372 -18.43468 -17.87632 -17.35772 -17.26002 -16.37877 -15.98305 -15.79100 -15.58609 -14.87184 -14.30544 -14.23699 -13.90813 -13.65862 -13.37849 -13.16131 -13.12614 -12.95533 -12.74882 -12.63110 -12.49117 -12.18874 -11.92318 -11.74684 -11.56611 -11.00687 -10.83169 -10.62912 -9.74849 -9.49892 -8.21969 -6.36101 0.03344 0.06491 1.38576 1.41726 1.47383 1.50449 1.53370 2.19205 2.30528 2.43254 3.08329 3.37318 3.64197 3.73562 4.03203 4.15716 4.18882 4.32834 4.50515 4.56770 4.78492 4.93369 4.95629 5.03938 5.18198 5.22055 5.40369 5.53804 5.56615 5.79412 6.04632 6.43702 6.58973 6.71600 7.17240 7.36303 8.84985 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027853 B = 0.005023 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.024144 B = 5573.370649 C = 6080.277674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.079 3.921 3 N -0.581 5.581 4 C 0.265 3.735 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.926 5.926 9 Si 0.964 3.036 10 H -0.280 1.280 11 H -0.278 1.278 12 H -0.261 1.261 13 C 0.575 3.425 14 O -0.587 6.587 15 C -0.080 4.080 16 C 0.029 3.971 17 N -0.487 5.487 18 C 0.254 3.746 19 Cl 0.065 6.935 20 N -0.418 5.418 21 C 0.056 3.944 22 H 0.110 0.890 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.003 0.997 28 H 0.035 0.965 29 H 0.268 0.732 30 H 0.237 0.763 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 -6.247 -15.424 17.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.043 4.043 3 N -0.310 5.310 4 C 0.145 3.855 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.565 5.565 9 Si 0.789 3.211 10 H -0.205 1.205 11 H -0.203 1.203 12 H -0.186 1.186 13 C 0.363 3.637 14 O -0.469 6.469 15 C -0.197 4.197 16 C -0.124 4.124 17 N -0.209 5.209 18 C -0.032 4.032 19 Cl 0.093 6.907 20 N -0.101 5.101 21 C -0.085 4.085 22 H 0.129 0.871 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.021 0.979 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.253 0.747 31 H 0.113 0.887 32 H 0.137 0.863 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.147 -6.051 -15.775 17.979 hybrid contribution 1.403 1.125 0.610 1.899 sum -4.744 -4.926 -15.165 16.635 Atomic orbital electron populations 1.22444 0.93890 1.04550 1.02729 1.22349 0.95693 0.81455 1.04825 1.47940 1.62036 1.14705 1.06315 1.18856 0.94710 0.92327 0.79617 1.21632 0.96019 1.34021 1.06573 0.92963 1.25770 1.02790 0.94441 0.95638 1.70025 1.38205 1.35726 1.12556 0.85521 0.79273 0.79051 0.77281 1.20532 1.20344 1.18550 1.17037 0.78729 0.84975 0.82933 1.90721 1.48404 1.20905 1.86899 1.20812 1.13435 1.00170 0.85268 1.24534 0.98518 0.95197 0.94116 1.70170 1.22937 1.23380 1.04372 1.23560 1.01701 0.89707 0.88244 1.98422 1.97178 1.97008 0.98131 1.45186 1.41394 1.18848 1.04697 1.22584 0.99040 0.82430 1.04445 0.87107 0.92276 0.92326 0.89097 0.88266 0.97893 0.94755 0.92338 0.74718 0.88659 0.86271 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.17 8.43 71.98 0.61 -3.56 16 2 C 0.08 2.36 5.63 86.38 0.49 2.84 16 3 N -0.58 -24.38 2.47 -830.90 -2.05 -26.43 16 4 C 0.27 13.86 5.11 85.63 0.44 14.30 16 5 C -0.54 -30.61 9.39 25.60 0.24 -30.37 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.74 5.46 84.65 0.46 1.20 16 8 N -0.93 -54.60 13.29 21.45 0.28 -54.32 16 9 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 13 C 0.58 24.64 7.56 86.44 0.65 25.29 16 14 O -0.59 -29.60 14.40 -4.32 -0.06 -29.67 16 15 C -0.08 -2.74 6.65 39.95 0.27 -2.48 16 16 C 0.03 0.85 8.31 84.11 0.70 1.55 16 17 N -0.49 -14.19 11.21 -190.25 -2.13 -16.32 16 18 C 0.25 6.92 8.48 180.25 1.53 8.45 16 19 Cl 0.07 1.28 28.83 -2.72 -0.08 1.21 16 20 N -0.42 -12.50 3.18 -528.35 -1.68 -14.19 16 21 C 0.06 1.38 10.65 127.77 1.36 2.74 16 22 H 0.11 1.72 8.07 -2.39 -0.02 1.70 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.06 1.46 6.18 -2.38 -0.01 1.44 16 25 H 0.09 2.75 8.02 -2.39 -0.02 2.73 16 26 H 0.10 2.60 5.13 -2.39 -0.01 2.59 16 27 H 0.00 0.18 7.47 -2.39 -0.02 0.16 16 28 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 29 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.24 5.55 3.06 -2.91 -0.01 5.54 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.12 2.07 7.92 -2.38 -0.02 2.05 16 33 H 0.09 2.87 6.17 -2.39 -0.01 2.85 16 Total: -1.00 -70.67 292.40 4.19 -66.48 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.14 Total: 7.18 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 6.74 Total: 19.97 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -5.58 Total: -111.26 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.06 Total: -29.67 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 17 Polarization: 1.28 SS G_CDS: -0.08 Total: 1.21 kcal Total: -70.67 4.19 -66.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696474490.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.128 kcal (2) G-P(sol) polarization free energy of solvation -70.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds