Wall clock time and date at job start Mon Mar 30 2020 01:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46757 * 2 1 4 4 C 1.50701 * 109.46841 * 120.00122 * 2 1 3 5 5 H 1.07997 * 120.00081 * 120.00324 * 4 2 1 6 6 C 1.37874 * 119.99959 * 299.99789 * 4 2 1 7 7 N 1.31513 * 120.00392 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00072 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47612 * 89.99763 * 8 6 4 10 10 H 1.48504 * 109.47092 * 210.00345 * 8 6 4 11 11 H 1.48507 * 109.46718 * 329.99393 * 8 6 4 12 12 N 1.46497 * 109.46874 * 239.99668 * 2 1 3 13 13 C 1.46497 * 120.00634 * 299.99929 * 12 2 1 14 14 C 1.34786 * 119.99388 * 120.00278 * 12 2 1 15 15 O 1.21694 * 120.00170 * 354.78196 * 14 12 2 16 16 C 1.46663 * 119.99556 * 175.06211 * 14 12 2 17 17 C 1.36676 * 126.84041 * 352.74619 * 16 14 12 18 18 N 1.33308 * 107.82267 * 179.83561 * 17 16 14 19 19 C 1.31020 * 109.70779 * 0.44229 * 18 17 16 20 20 Cl 1.73598 * 125.43260 * 179.68969 * 19 18 17 21 21 N 1.34597 * 109.12703 * 359.71955 * 19 18 17 22 22 C 1.46503 * 126.48648 * 179.97438 * 21 19 18 23 23 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47304 * 299.99932 * 1 2 3 25 25 H 1.08996 * 109.47433 * 59.99788 * 1 2 3 26 26 H 0.97003 * 120.00461 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.47529 * 265.53816 * 13 12 2 28 28 H 1.09007 * 109.46548 * 25.53217 * 13 12 2 29 29 H 1.08997 * 109.46985 * 145.53134 * 13 12 2 30 30 H 1.07995 * 126.08690 * 359.97438 * 17 16 14 31 31 H 1.09002 * 109.47536 * 264.86921 * 22 21 19 32 32 H 1.08992 * 109.47286 * 24.87212 * 22 21 19 33 33 H 1.09003 * 109.46846 * 144.87079 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5442 4.4120 10 1 1.3442 -0.9491 5.1123 11 1 2.4877 -2.5655 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0092 1.1535 -1.9411 16 6 3.3711 -0.7547 -3.2235 17 6 3.3322 -2.1024 -3.4473 18 7 3.9693 -2.3443 -4.5930 19 6 4.4151 -1.2199 -5.0966 20 17 5.3098 -1.0645 -6.5761 21 7 4.0692 -0.2047 -4.2834 22 6 4.3749 1.2142 -4.4828 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.7081 1.1608 3.4845 27 1 2.4551 -2.7362 -1.0413 28 1 0.7287 -2.3210 -0.9173 29 1 1.5461 -2.2660 -2.4976 30 1 2.8661 -2.8398 -2.8107 31 1 5.2828 1.4705 -3.9367 32 1 4.5229 1.4082 -5.5450 33 1 3.5464 1.8195 -4.1148 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696476225.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:58 Heat of formation + Delta-G solvation = 25.200860 kcal Electronic energy + Delta-G solvation = -18908.293846 eV Core-core repulsion = 15803.562632 eV Total energy + Delta-G solvation = -3104.731213 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.46597 -40.45790 -38.14122 -37.34803 -35.42513 -34.77280 -32.24501 -30.04318 -28.54046 -27.76193 -27.27812 -24.68015 -22.92058 -22.05091 -20.43317 -18.59458 -18.35729 -17.72955 -17.43574 -17.20344 -16.31769 -15.93096 -15.66433 -15.30915 -14.81437 -14.39296 -14.27595 -13.97144 -13.79848 -13.49325 -13.02088 -12.92616 -12.77915 -12.71195 -12.69201 -12.33002 -12.13650 -12.09247 -11.57190 -11.19236 -10.99151 -10.88826 -10.50824 -9.75032 -9.39610 -8.13717 -6.29945 0.02649 0.07101 1.44655 1.45383 1.49678 1.52406 1.56720 2.20164 2.31135 2.48589 3.15217 3.41256 3.65954 3.74982 4.17222 4.20057 4.34248 4.50349 4.67180 4.72440 4.82393 4.90596 5.02140 5.05618 5.19417 5.44901 5.53549 5.60898 5.66283 6.01352 6.14604 6.45002 6.67346 6.76648 7.17296 7.42532 8.90753 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.035089 B = 0.004572 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.774568 B = 6122.251212 C = 6291.990422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.266 3.734 3 H 0.015 0.985 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.284 1.284 10 H -0.282 1.282 11 H -0.260 1.260 12 N -0.579 5.579 13 C 0.059 3.941 14 C 0.573 3.427 15 O -0.595 6.595 16 C -0.076 4.076 17 C 0.036 3.964 18 N -0.488 5.488 19 C 0.255 3.745 20 Cl 0.065 6.935 21 N -0.418 5.418 22 C 0.065 3.935 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.020 0.980 26 H 0.265 0.735 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.230 0.770 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 -5.244 -15.135 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.033 0.967 4 C -0.577 4.577 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.210 1.210 10 H -0.207 1.207 11 H -0.184 1.184 12 N -0.307 5.307 13 C -0.083 4.083 14 C 0.362 3.638 15 O -0.479 6.479 16 C -0.193 4.193 17 C -0.117 4.117 18 N -0.210 5.210 19 C -0.031 4.031 20 Cl 0.093 6.907 21 N -0.102 5.102 22 C -0.076 4.076 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.039 0.961 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.246 0.754 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.090 -5.077 -15.427 17.019 hybrid contribution 0.269 0.939 1.218 1.561 sum 5.359 -4.138 -14.209 15.739 Atomic orbital electron populations 1.21905 0.96751 1.00505 1.00120 1.18651 0.91886 0.92299 0.80713 0.96746 1.21564 1.32039 1.13231 0.90838 0.91762 1.25683 0.94999 0.95596 1.01889 1.70012 1.37168 1.23878 1.24475 0.85477 0.77665 0.79360 0.78644 1.21023 1.20709 1.18424 1.47899 1.47454 1.13605 1.21771 1.22541 1.02576 0.80448 1.02700 1.17071 0.79245 0.85823 0.81699 1.90726 1.63536 1.16552 1.77041 1.20804 1.09216 0.94980 0.94331 1.24146 0.99681 0.93331 0.94548 1.70151 1.15534 1.24416 1.10936 1.23531 1.02810 0.84415 0.92366 1.98422 1.70472 1.97266 1.24563 1.45179 1.38918 1.09744 1.16350 1.22466 1.04229 0.75623 1.05289 0.92928 0.91144 0.96062 0.92614 0.90858 0.89838 0.88272 0.75390 0.89077 0.86103 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 8.96 71.98 0.64 -5.60 16 2 C 0.27 13.37 2.63 44.25 0.12 13.48 16 3 H 0.01 0.87 6.91 -2.39 -0.02 0.86 16 4 C -0.54 -28.22 8.37 25.60 0.21 -28.00 16 5 H 0.06 3.25 7.65 -2.91 -0.02 3.23 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.92 -51.43 11.32 21.45 0.24 -51.19 16 8 Si 0.96 41.94 29.54 68.60 2.03 43.97 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 12 N -0.58 -23.89 2.75 -831.53 -2.29 -26.18 16 13 C 0.06 1.76 7.91 127.77 1.01 2.77 16 14 C 0.57 23.91 7.64 86.44 0.66 24.57 16 15 O -0.59 -28.94 14.46 -4.33 -0.06 -29.00 16 16 C -0.08 -2.57 6.75 39.95 0.27 -2.30 16 17 C 0.04 1.04 9.79 84.10 0.82 1.86 16 18 N -0.49 -14.23 11.21 -190.26 -2.13 -16.36 16 19 C 0.26 6.84 8.48 180.25 1.53 8.37 16 20 Cl 0.07 1.26 28.63 -2.72 -0.08 1.18 16 21 N -0.42 -12.17 3.18 -528.38 -1.68 -13.85 16 22 C 0.06 1.53 10.36 127.77 1.32 2.85 16 23 H 0.05 2.18 6.66 -2.39 -0.02 2.17 16 24 H 0.07 3.65 6.07 -2.38 -0.01 3.64 16 25 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.07 1.99 7.52 -2.39 -0.02 1.97 16 28 H 0.08 2.48 6.44 -2.38 -0.02 2.46 16 29 H 0.10 2.38 5.10 -2.39 -0.01 2.37 16 30 H 0.23 5.28 4.43 -2.91 -0.01 5.26 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.12 1.92 7.63 -2.39 -0.02 1.91 16 33 H 0.09 2.47 6.94 -2.39 -0.02 2.45 16 Total: -1.00 -66.69 288.52 4.22 -62.47 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.15 Total: 9.52 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 7.04 Total: 19.43 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -5.86 Total: -107.58 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.06 Total: -29.00 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 17 Polarization: 1.26 SS G_CDS: -0.08 Total: 1.18 kcal Total: -66.69 4.22 -62.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696476225.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.674 kcal (2) G-P(sol) polarization free energy of solvation -66.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds