Wall clock time and date at job start Mon Mar 30 2020 00:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99724 * 2 1 4 4 C 1.53004 * 109.46939 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46915 * 64.99689 * 4 3 2 6 6 C 1.46491 * 120.00067 * 274.66704 * 5 4 3 7 7 C 1.50702 * 109.47164 * 263.74773 * 6 5 4 8 8 H 1.08001 * 119.99783 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00134 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00035 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99995 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47051 * 90.00372 * 11 9 7 13 13 H 1.48501 * 109.46958 * 209.99751 * 11 9 7 14 14 H 1.48496 * 109.47224 * 329.99833 * 11 9 7 15 15 C 1.34773 * 119.99488 * 94.67083 * 5 4 3 16 16 O 1.21570 * 120.00247 * 354.43209 * 15 5 4 17 17 C 1.47751 * 119.99620 * 174.71440 * 15 5 4 18 18 C 1.39358 * 124.11495 * 183.98542 * 17 15 5 19 19 N 1.30097 * 112.14307 * 179.77754 * 18 17 15 20 20 S 1.55926 * 108.75210 * 0.46689 * 19 18 17 21 21 N 1.31487 * 124.11733 * 4.28713 * 17 15 5 22 22 H 1.08998 * 109.46833 * 60.00161 * 1 2 3 23 23 H 1.08993 * 109.46780 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46950 * 300.00197 * 1 2 3 25 25 H 1.08996 * 109.46938 * 59.99782 * 3 2 1 26 26 H 1.08995 * 109.46940 * 299.99371 * 3 2 1 27 27 H 1.09001 * 109.46992 * 304.99643 * 4 3 2 28 28 H 1.09000 * 109.47178 * 184.99913 * 4 3 2 29 29 H 1.09000 * 109.47404 * 23.74535 * 6 5 4 30 30 H 1.08998 * 109.47184 * 143.75189 * 6 5 4 31 31 H 0.97002 * 120.00465 * 180.02562 * 10 9 7 32 32 H 1.07992 * 123.92745 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0084 -0.8955 -1.3732 7 6 5.4015 -1.3935 -1.0860 8 1 6.1847 -0.6928 -0.8368 9 6 5.6761 -2.7434 -1.1414 10 7 6.8917 -3.1781 -0.8902 11 14 4.3212 -3.9553 -1.5717 12 1 4.2848 -4.1552 -3.0427 13 1 4.5876 -5.2538 -0.9022 14 1 3.0144 -3.4204 -1.1122 15 6 4.3534 1.3357 -2.2896 16 8 4.2318 2.5436 -2.2250 17 6 4.9084 0.7132 -3.5092 18 6 5.3977 1.4303 -4.5994 19 7 5.8342 0.6494 -5.5440 20 16 5.6333 -0.8324 -5.1022 21 7 4.9955 -0.5847 -3.7006 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6885 1.8464 0.8899 26 1 1.6887 1.8464 -0.8900 27 1 3.8508 0.5687 0.8427 28 1 3.9785 2.1766 0.0902 29 1 3.3112 -1.3352 -0.6600 30 1 3.7218 -1.1816 -2.3852 31 1 7.0850 -4.1278 -0.9295 32 1 5.4163 2.5088 -4.6522 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701261456.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:40 Heat of formation + Delta-G solvation = 0.391244 kcal Electronic energy + Delta-G solvation = -19301.257443 eV Core-core repulsion = 16197.494110 eV Total energy + Delta-G solvation = -3103.763333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.59754 -38.71929 -37.43402 -35.19329 -33.00265 -32.44756 -30.06175 -27.71650 -26.85346 -25.91428 -23.43517 -22.49136 -21.34772 -18.92386 -18.74695 -17.02297 -16.64396 -16.09536 -15.82526 -15.41792 -15.19651 -14.95565 -14.58346 -14.09151 -13.67373 -13.31207 -12.56359 -12.20263 -12.05510 -11.92863 -11.68604 -11.50503 -10.99134 -10.92798 -10.75770 -10.74339 -10.52305 -10.15465 -9.89023 -9.54498 -9.49179 -9.25196 -8.70518 -8.54082 -7.79081 -6.08227 -4.02578 1.07364 2.00085 2.07883 2.18782 3.27887 3.35178 3.40522 3.60376 3.77380 4.03510 4.41537 4.96543 5.23705 5.27168 5.28096 5.38526 5.53243 5.54544 5.57482 5.71526 5.74191 5.88611 5.93294 6.23903 6.61337 6.94491 7.08936 7.33905 7.40795 7.62593 8.05650 8.46878 8.70151 8.93967 9.53394 11.04867 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013165 B = 0.010346 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.372200 B = 2705.635755 C = 4050.631597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.047 3.953 4 C 0.121 3.879 5 N -0.563 5.563 6 C 0.205 3.795 7 C -0.505 4.505 8 H 0.070 0.930 9 C 0.078 3.922 10 N -0.899 5.899 11 Si 0.866 3.134 12 H -0.274 1.274 13 H -0.288 1.288 14 H -0.261 1.261 15 C 0.602 3.398 16 O -0.562 6.562 17 C 0.009 3.991 18 C 0.081 3.919 19 N -0.594 5.594 20 S 0.659 5.341 21 N -0.462 5.462 22 H 0.036 0.964 23 H 0.082 0.918 24 H 0.037 0.963 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.263 0.737 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.969 5.639 -3.250 11.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.031 4.031 4 C -0.003 4.003 5 N -0.291 5.291 6 C 0.084 3.916 7 C -0.545 4.545 8 H 0.088 0.912 9 C -0.124 4.124 10 N -0.539 5.539 11 Si 0.693 3.307 12 H -0.200 1.200 13 H -0.214 1.214 14 H -0.186 1.186 15 C 0.385 3.615 16 O -0.443 6.443 17 C -0.165 4.165 18 C -0.114 4.114 19 N -0.434 5.434 20 S 0.702 5.298 21 N -0.309 5.309 22 H 0.055 0.945 23 H 0.101 0.899 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.344 4.115 -4.240 10.225 hybrid contribution -1.030 0.891 0.729 1.545 sum -9.375 5.006 -3.511 11.192 Atomic orbital electron populations 1.22691 0.82000 1.02401 0.99372 1.88036 1.18846 1.27615 1.95263 1.23034 0.94933 0.84928 1.00162 1.21492 0.91343 1.00020 0.87416 1.47768 1.60654 1.09427 1.11245 1.20278 0.98435 0.74094 0.98836 1.21224 0.94193 0.92986 1.46074 0.91203 1.24713 0.95082 0.97929 0.94697 1.69900 1.19507 1.14770 1.49695 0.86983 0.83562 0.80979 0.79155 1.19951 1.21404 1.18558 1.16815 0.77716 0.85333 0.81591 1.90712 1.58111 1.13517 1.81917 1.22372 1.07251 0.87350 0.99529 1.23657 0.97245 1.02816 0.87680 1.72186 1.26493 1.10080 1.34607 1.79249 1.40006 1.08541 1.02052 1.73566 1.18125 1.20445 1.18762 0.94533 0.89949 0.94490 0.92744 0.93103 0.89029 0.88681 0.93687 0.92647 0.92696 0.77857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.30 9.21 -35.23 -0.32 -6.62 16 3 C 0.05 0.71 6.28 37.16 0.23 0.94 16 4 C 0.12 2.09 5.84 -4.04 -0.02 2.07 16 5 N -0.56 -11.71 2.46 -176.21 -0.43 -12.14 16 6 C 0.21 4.77 3.58 -5.20 -0.02 4.75 16 7 C -0.51 -13.53 8.42 -34.44 -0.29 -13.82 16 8 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 9 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -26.51 13.96 55.43 0.77 -25.74 16 11 Si 0.87 20.74 27.47 -169.99 -4.67 16.07 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 15 C 0.60 12.47 7.61 -12.37 -0.09 12.37 16 16 O -0.56 -11.67 16.37 5.30 0.09 -11.59 16 17 C 0.01 0.18 6.51 -83.71 -0.55 -0.36 16 18 C 0.08 1.40 11.22 -17.87 -0.20 1.20 16 19 N -0.59 -10.19 11.41 19.43 0.22 -9.96 16 20 S 0.66 11.35 23.69 -107.50 -2.55 8.80 16 21 N -0.46 -9.60 6.72 23.18 0.16 -9.44 16 22 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.09 1.60 8.11 -51.93 -0.42 1.18 16 28 H 0.10 1.54 7.36 -51.93 -0.38 1.15 16 29 H 0.05 1.08 5.89 -51.93 -0.31 0.77 16 30 H 0.06 1.31 5.05 -51.93 -0.26 1.05 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.20 2.95 8.06 -52.49 -0.42 2.52 16 LS Contribution 289.53 15.07 4.36 4.36 Total: -1.00 -31.53 289.53 -5.79 -37.33 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -3.50 Total: -1.77 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 0.08 Total: 10.70 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.72 Total: -57.28 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.24 Total: -18.21 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Atomic # 16 Polarization: 11.35 SS G_CDS: -2.55 Total: 8.80 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.53 -5.79 -37.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701261456.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.719 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds