Wall clock time and date at job start Mon Mar 30 2020 01:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34601 * 126.49285 * 2 1 4 4 Cl 1.73599 * 125.43218 * 359.97438 * 3 2 1 5 5 N 1.31018 * 109.12932 * 179.97438 * 3 2 1 6 6 C 1.33303 * 109.70577 * 359.97438 * 5 3 2 7 7 C 1.36671 * 107.82832 * 359.97438 * 6 5 3 8 8 C 1.46665 * 126.83903 * 179.97438 * 7 6 5 9 9 O 1.21692 * 119.99981 * 174.46886 * 8 7 6 10 10 N 1.34775 * 120.00134 * 354.47262 * 8 7 6 11 11 C 1.46496 * 120.00147 * 185.12215 * 10 8 7 12 12 C 1.53004 * 109.47361 * 179.97438 * 11 10 8 13 13 C 1.52992 * 109.47351 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47243 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99578 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00025 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00180 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99996 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46896 * 60.00080 * 18 16 14 20 20 H 1.48504 * 109.46960 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47183 * 300.00090 * 18 16 14 22 22 H 1.09001 * 109.46978 * 274.32121 * 1 2 3 23 23 H 1.08999 * 109.46769 * 34.32322 * 1 2 3 24 24 H 1.08996 * 109.46832 * 154.32171 * 1 2 3 25 25 H 1.08000 * 126.08323 * 180.26000 * 6 5 3 26 26 H 0.97005 * 119.99832 * 5.11923 * 10 8 7 27 27 H 1.08999 * 109.47359 * 299.99718 * 11 10 8 28 28 H 1.08999 * 109.47226 * 60.00080 * 11 10 8 29 29 H 1.08999 * 109.46872 * 300.00284 * 12 11 10 30 30 H 1.08999 * 109.46666 * 60.00006 * 12 11 10 31 31 H 1.08999 * 109.47319 * 299.99955 * 13 12 11 32 32 H 1.09003 * 109.46946 * 59.99924 * 13 12 11 33 33 H 0.96990 * 120.00190 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2655 1.0821 0.0000 4 17 1.7269 2.7324 -0.0006 5 7 3.5160 0.6911 0.0006 6 6 3.5705 -0.6408 0.0015 7 6 2.2876 -1.1121 0.0021 8 6 1.8669 -2.5171 0.0027 9 8 0.6875 -2.7991 0.1048 10 7 2.7865 -3.4959 -0.1098 11 6 2.3595 -4.8928 -0.2222 12 6 3.5901 -5.7947 -0.3371 13 6 3.1441 -7.2534 -0.4552 14 6 4.3562 -8.1418 -0.5677 15 1 5.3457 -7.7091 -0.5566 16 6 4.2020 -9.5068 -0.6859 17 7 2.9970 -10.0336 -0.6999 18 14 5.7044 -10.6079 -0.8261 19 1 6.5513 -10.4459 0.3829 20 1 5.2714 -12.0237 -0.9418 21 1 6.4848 -10.2293 -2.0315 22 1 -0.3633 0.0774 1.0248 23 1 -0.3633 0.8487 -0.5795 24 1 -0.3633 -0.9262 -0.4453 25 1 4.4686 -1.2407 0.0061 26 1 3.7311 -3.2755 -0.1164 27 1 1.7868 -5.1700 0.6628 28 1 1.7378 -5.0124 -1.1095 29 1 4.1624 -5.5173 -1.2223 30 1 4.2121 -5.6752 0.5499 31 1 2.5716 -7.5311 0.4298 32 1 2.5222 -7.3725 -1.3424 33 1 2.8885 -10.9938 -0.7835 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710256295.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:04 Heat of formation + Delta-G solvation = -16.182534 kcal Electronic energy + Delta-G solvation = -17601.016448 eV Core-core repulsion = 14494.490716 eV Total energy + Delta-G solvation = -3106.525732 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.45019 -40.46789 -38.15473 -37.05263 -35.52398 -35.03609 -33.22543 -31.10818 -28.45996 -28.25221 -25.45239 -23.86568 -22.63973 -22.27847 -21.12042 -19.16354 -18.48707 -17.58326 -17.48897 -17.04218 -16.54188 -16.45095 -15.79200 -15.37625 -15.27770 -14.73707 -14.26083 -14.21644 -13.81990 -13.74452 -13.52415 -12.96395 -12.72643 -12.69961 -12.53608 -12.40005 -11.78074 -11.63889 -11.48124 -11.23549 -11.06736 -11.01245 -10.52154 -10.25515 -9.71538 -8.17428 -6.28319 -0.02705 0.02314 1.42156 1.43908 1.46387 1.47579 1.54164 2.11348 2.20091 2.44534 3.16755 3.39610 3.64042 3.74492 4.14560 4.19902 4.20727 4.24860 4.52130 4.58076 4.78531 4.97562 4.97723 5.17789 5.21426 5.35943 5.49533 5.55331 5.74750 5.87508 6.24655 6.34701 6.49557 6.89575 7.03260 7.41308 8.94416 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.053853 B = 0.002798 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.811393 B =10005.004288 C =10484.478891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.416 5.416 3 C 0.256 3.744 4 Cl 0.063 6.937 5 N -0.492 5.492 6 C 0.059 3.941 7 C -0.084 4.084 8 C 0.592 3.408 9 O -0.578 6.578 10 N -0.696 5.696 11 C 0.134 3.866 12 C -0.104 4.104 13 C 0.023 3.977 14 C -0.541 4.541 15 H 0.067 0.933 16 C -0.003 4.003 17 N -0.936 5.936 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.288 1.288 21 H -0.266 1.266 22 H 0.098 0.902 23 H 0.114 0.886 24 H 0.097 0.903 25 H 0.221 0.779 26 H 0.419 0.581 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.070 0.930 31 H -0.007 1.007 32 H -0.007 1.007 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 24.530 1.327 24.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.099 5.099 3 C -0.031 4.031 4 Cl 0.090 6.910 5 N -0.214 5.214 6 C -0.095 4.095 7 C -0.201 4.201 8 C 0.379 3.621 9 O -0.459 6.459 10 N -0.347 5.347 11 C 0.010 3.990 12 C -0.141 4.141 13 C -0.014 4.014 14 C -0.579 4.579 15 H 0.086 0.914 16 C -0.200 4.200 17 N -0.576 5.576 18 Si 0.789 3.211 19 H -0.191 1.191 20 H -0.213 1.213 21 H -0.190 1.190 22 H 0.116 0.884 23 H 0.132 0.868 24 H 0.116 0.884 25 H 0.237 0.763 26 H 0.256 0.744 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.011 0.989 32 H 0.012 0.988 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.267 24.834 1.366 24.975 hybrid contribution -0.136 -1.161 -0.070 1.171 sum -2.402 23.673 1.296 23.830 Atomic orbital electron populations 1.22590 0.73280 1.06631 1.05845 1.45218 1.09454 1.04198 1.51041 1.23492 0.86644 0.85407 1.07538 1.98439 1.88453 1.07160 1.96927 1.70101 1.16774 1.13309 1.21203 1.23254 0.96253 0.89829 1.00194 1.20714 0.91787 0.88035 1.19543 1.16837 0.85374 0.83507 0.76373 1.90791 1.18443 1.84416 1.52279 1.45566 1.10322 1.05908 1.72888 1.21330 0.97826 0.78680 1.01152 1.21618 0.95886 0.94229 1.02403 1.18939 0.95706 0.91638 0.95154 1.21679 0.94043 0.92329 1.49801 0.91445 1.25995 0.98907 1.00193 0.94951 1.70096 1.23684 1.12271 1.51548 0.85509 0.79192 0.77144 0.79253 1.19051 1.21346 1.19049 0.88368 0.86764 0.88440 0.76282 0.74350 0.92566 0.92488 0.91040 0.91089 0.98863 0.98821 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 10.53 127.77 1.35 2.27 16 2 N -0.42 -8.81 3.18 -528.38 -1.68 -10.49 16 3 C 0.26 5.33 8.48 180.25 1.53 6.86 16 4 Cl 0.06 0.95 28.83 -2.72 -0.08 0.88 16 5 N -0.49 -11.30 11.21 -190.26 -2.13 -13.43 16 6 C 0.06 1.19 11.37 84.10 0.96 2.14 16 7 C -0.08 -1.95 6.91 39.95 0.28 -1.67 16 8 C 0.59 16.24 7.77 86.44 0.67 16.91 16 9 O -0.58 -19.63 14.87 -4.32 -0.06 -19.69 16 10 N -0.70 -17.37 5.54 -467.10 -2.59 -19.96 16 11 C 0.13 4.28 5.68 86.38 0.49 4.77 16 12 C -0.10 -3.69 5.27 30.59 0.16 -3.53 16 13 C 0.02 1.16 4.97 29.85 0.15 1.31 16 14 C -0.54 -29.34 9.11 25.60 0.23 -29.10 16 15 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 16 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 17 N -0.94 -56.30 13.29 21.45 0.28 -56.02 16 18 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 23 H 0.11 1.19 7.92 -2.39 -0.02 1.17 16 24 H 0.10 1.96 6.39 -2.39 -0.02 1.94 16 25 H 0.22 2.72 7.46 -2.91 -0.02 2.70 16 26 H 0.42 7.59 7.42 -92.70 -0.69 6.90 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H 0.26 14.94 8.31 -92.72 -0.77 14.17 16 Total: -1.00 -69.74 305.57 2.49 -67.25 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.45 Total: 6.10 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 6.27 Total: 0.26 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -6.12 Total: -99.89 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.06 Total: -19.69 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 17 Polarization: 0.95 SS G_CDS: -0.08 Total: 0.88 kcal Total: -69.74 2.49 -67.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710256295.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.066 kcal (2) G-P(sol) polarization free energy of solvation -69.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds