Wall clock time and date at job start Mon Mar 30 2020 01:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 117.00180 * 2 1 4 4 O 1.20820 * 119.99537 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99828 * 180.02562 * 3 2 1 6 6 H 1.09004 * 115.56404 * 325.69626 * 5 3 2 7 7 C 1.53006 * 117.49969 * 111.38342 * 5 3 2 8 8 C 1.52995 * 117.49789 * 180.02562 * 5 3 2 9 9 H 1.09004 * 117.51920 * 359.97438 * 8 5 3 10 10 C 1.50698 * 117.50176 * 145.02475 * 8 5 3 11 11 O 1.21296 * 119.99814 * 0.02562 * 10 8 5 12 12 N 1.34778 * 120.00414 * 180.02562 * 10 8 5 13 13 C 1.37096 * 120.00111 * 180.02562 * 12 10 8 14 14 H 1.07997 * 120.00249 * 342.70969 * 13 12 10 15 15 C 1.38950 * 119.99975 * 162.99553 * 13 12 10 16 16 N 1.31417 * 119.99970 * 336.50299 * 15 13 12 17 17 Si 1.86799 * 120.00352 * 156.50874 * 15 13 12 18 18 H 1.48502 * 109.46803 * 59.99432 * 17 15 13 19 19 H 1.48497 * 109.47214 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46783 * 299.99825 * 17 15 13 21 21 C 1.46500 * 119.99818 * 359.97438 * 12 10 8 22 22 C 1.50706 * 109.47088 * 276.07309 * 21 12 10 23 23 O 1.20826 * 120.00007 * 359.97438 * 22 21 12 24 24 O 1.34226 * 120.00005 * 180.02562 * 22 21 12 25 25 H 1.09000 * 109.47374 * 59.98941 * 1 2 3 26 26 H 1.08998 * 109.47551 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47019 * 299.99855 * 1 2 3 28 28 H 1.09006 * 117.49431 * 359.97438 * 7 5 3 29 29 H 1.08992 * 117.52111 * 214.97175 * 7 5 3 30 30 H 0.96993 * 120.00056 * 180.02562 * 16 15 13 31 31 H 1.08996 * 109.47122 * 36.06806 * 21 12 10 32 32 H 1.09000 * 109.47220 * 156.07563 * 21 12 10 33 33 H 0.96701 * 117.00235 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0787 0.4881 0.5532 7 6 4.2455 1.8061 -1.2645 8 6 4.2008 2.6670 0.0001 9 1 3.5300 3.5262 0.0005 10 6 5.4864 2.8454 0.7658 11 8 5.9793 1.9043 1.3510 12 7 6.0884 4.0508 0.8005 13 6 7.2582 4.2130 1.4968 14 1 7.5535 3.4815 2.2343 15 6 8.0610 5.3217 1.2578 16 7 7.9833 5.9535 0.1081 17 14 9.2507 5.9140 2.5705 18 1 10.2177 4.8322 2.8865 19 1 9.9855 7.1042 2.0719 20 1 8.4948 6.2759 3.7964 21 6 5.4933 5.1874 0.0933 22 6 5.9134 5.1545 -1.3537 23 8 6.6362 4.2724 -1.7530 24 8 5.4855 6.1056 -2.1986 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.6037 2.0983 -2.0957 29 1 5.2046 1.3694 -1.5424 30 1 8.5439 6.7272 -0.0589 31 1 4.4069 5.1269 0.1576 32 1 5.8331 6.1173 0.5492 33 1 5.7818 6.0427 -3.1169 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737577565.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:17 Heat of formation + Delta-G solvation = -165.919948 kcal Electronic energy + Delta-G solvation = -21354.023029 eV Core-core repulsion = 17768.002280 eV Total energy + Delta-G solvation = -3586.020749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57246 -39.48381 -38.43687 -36.75023 -35.67891 -35.03136 -34.39110 -31.79919 -28.27225 -27.75765 -25.83741 -24.23608 -22.90249 -21.14871 -20.44372 -18.65187 -17.90916 -17.18670 -16.97058 -16.75700 -16.28432 -15.84715 -15.63493 -14.92361 -14.48357 -14.25834 -13.96568 -13.54510 -13.28805 -13.09057 -12.48064 -12.09232 -11.97414 -11.83680 -11.65559 -11.50838 -11.00088 -10.83356 -10.60146 -10.51133 -10.41590 -10.36450 -10.26321 -10.18395 -9.64388 -9.07408 -8.63165 -7.97328 -6.51424 -3.94191 2.15828 2.64985 3.10382 3.21844 3.25664 3.35612 3.52314 3.86546 4.13548 4.31186 4.57699 4.83595 4.91066 5.01753 5.03571 5.08927 5.26425 5.36502 5.43929 5.54981 5.85641 5.91123 6.19264 6.25065 6.38236 6.42791 6.52105 7.46457 7.50847 7.80816 7.91609 8.29876 9.00159 9.02166 9.24098 9.76748 10.57289 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.026005 B = 0.005540 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.454554 B = 5053.373702 C = 5690.269216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.497 3.503 4 O -0.509 6.509 5 C -0.148 4.148 6 H 0.147 0.853 7 C -0.115 4.115 8 C -0.140 4.140 9 H 0.125 0.875 10 C 0.486 3.514 11 O -0.573 6.573 12 N -0.421 5.421 13 C -0.309 4.309 14 H 0.109 0.891 15 C 0.032 3.968 16 N -0.875 5.875 17 Si 0.930 3.070 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.143 3.857 22 C 0.490 3.510 23 O -0.499 6.499 24 O -0.535 6.535 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.272 0.728 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.057 -2.980 -3.506 11.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.340 3.660 4 O -0.397 6.397 5 C -0.168 4.168 6 H 0.165 0.835 7 C -0.153 4.153 8 C -0.161 4.161 9 H 0.143 0.857 10 C 0.274 3.726 11 O -0.457 6.457 12 N -0.139 5.139 13 C -0.436 4.436 14 H 0.127 0.873 15 C -0.172 4.172 16 N -0.513 5.513 17 Si 0.756 3.244 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.016 3.984 22 C 0.330 3.670 23 O -0.384 6.384 24 O -0.346 6.346 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.135 0.865 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.144 0.856 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -10.845 -3.206 -2.977 11.695 hybrid contribution 0.655 0.557 -0.241 0.893 sum -10.190 -2.649 -3.218 11.010 Atomic orbital electron populations 1.23256 0.76602 1.03518 1.02508 1.86513 1.23107 1.33342 1.84132 1.22756 0.90519 0.81091 0.71603 1.90639 1.66947 1.36429 1.45706 1.21674 0.87224 1.01321 1.06542 0.83493 1.22981 1.02151 1.00281 0.89844 1.22413 0.98782 0.93688 1.01250 0.85679 1.18911 0.85909 0.82956 0.84797 1.90533 1.67358 1.39247 1.48561 1.43315 1.21934 1.05615 1.43034 1.19672 0.98309 1.08788 1.16861 0.87325 1.25258 0.97882 0.97611 0.96414 1.69841 1.40442 1.21100 1.19964 0.85938 0.79719 0.78215 0.80544 1.19731 1.20982 1.19739 1.20691 0.96336 0.94743 0.86589 1.23719 0.76914 0.77809 0.88608 1.90602 1.33197 1.37113 1.77457 1.84521 1.71938 1.53835 1.24289 0.91989 0.88183 0.91900 0.87958 0.86518 0.91744 0.90092 0.85624 0.75139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.35 -4.85 10.57 -39.26 -0.41 -5.27 16 3 C 0.50 7.89 7.74 36.00 0.28 8.17 16 4 O -0.51 -8.97 16.01 -18.75 -0.30 -9.27 16 5 C -0.15 -2.50 5.81 -91.77 -0.53 -3.04 16 6 H 0.15 2.54 7.67 -51.93 -0.40 2.14 16 7 C -0.11 -1.90 9.94 -26.71 -0.27 -2.17 16 8 C -0.14 -2.69 4.70 -91.75 -0.43 -3.12 16 9 H 0.13 2.26 6.06 -51.93 -0.31 1.94 16 10 C 0.49 11.73 7.19 -10.99 -0.08 11.65 16 11 O -0.57 -15.54 15.90 5.54 0.09 -15.45 16 12 N -0.42 -10.49 2.18 -116.09 -0.25 -10.75 16 13 C -0.31 -8.37 9.32 -14.93 -0.14 -8.51 16 14 H 0.11 3.07 7.40 -52.49 -0.39 2.69 16 15 C 0.03 0.82 4.81 -17.47 -0.08 0.73 16 16 N -0.87 -22.59 9.38 55.50 0.52 -22.07 16 17 Si 0.93 20.13 29.61 -169.99 -5.03 15.09 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 C 0.14 3.08 4.97 -5.19 -0.03 3.06 16 22 C 0.49 10.63 6.38 36.01 0.23 10.86 16 23 O -0.50 -12.53 16.72 -18.75 -0.31 -12.84 16 24 O -0.53 -9.46 13.42 -39.25 -0.53 -9.98 16 25 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 28 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.12 2.03 8.14 -51.93 -0.42 1.61 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.08 1.46 6.27 -51.93 -0.33 1.13 16 32 H 0.13 2.79 6.45 -51.93 -0.34 2.46 16 33 H 0.39 5.29 9.10 45.56 0.41 5.70 16 LS Contribution 298.49 15.07 4.50 4.50 Total: -1.00 -33.61 298.49 -4.31 -37.93 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -2.59 Total: 9.06 kcal Atomic # 6 Polarization: 19.04 SS G_CDS: 0.02 Total: 19.05 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.27 Total: -32.82 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -1.47 Total: -52.82 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.61 -4.31 -37.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737577565.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.994 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds