Wall clock time and date at job start Mon Mar 30 2020 01:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 117.00180 * 2 1 4 4 O 1.20820 * 119.99537 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99828 * 180.02562 * 3 2 1 6 6 H 1.09004 * 115.56404 * 325.69626 * 5 3 2 7 7 C 1.53006 * 117.49969 * 111.38342 * 5 3 2 8 8 C 1.52995 * 117.49789 * 180.02562 * 5 3 2 9 9 H 1.09004 * 117.51920 * 359.97438 * 8 5 3 10 10 C 1.50698 * 117.50176 * 145.02475 * 8 5 3 11 11 O 1.21296 * 119.99814 * 0.02562 * 10 8 5 12 12 N 1.34778 * 120.00414 * 180.02562 * 10 8 5 13 13 C 1.37096 * 120.00111 * 180.02562 * 12 10 8 14 14 H 1.07997 * 120.00249 * 342.70969 * 13 12 10 15 15 C 1.38950 * 119.99975 * 162.99553 * 13 12 10 16 16 N 1.31417 * 119.99970 * 336.50299 * 15 13 12 17 17 Si 1.86799 * 120.00352 * 156.50874 * 15 13 12 18 18 H 1.48502 * 109.46803 * 59.99432 * 17 15 13 19 19 H 1.48497 * 109.47214 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46783 * 299.99825 * 17 15 13 21 21 C 1.46500 * 119.99818 * 359.97438 * 12 10 8 22 22 C 1.50706 * 109.47088 * 276.07309 * 21 12 10 23 23 O 1.20826 * 120.00007 * 359.97438 * 22 21 12 24 24 O 1.34226 * 120.00005 * 180.02562 * 22 21 12 25 25 H 1.09000 * 109.47374 * 59.98941 * 1 2 3 26 26 H 1.08998 * 109.47551 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47019 * 299.99855 * 1 2 3 28 28 H 1.09006 * 117.49431 * 359.97438 * 7 5 3 29 29 H 1.08992 * 117.52111 * 214.97175 * 7 5 3 30 30 H 0.96993 * 120.00056 * 180.02562 * 16 15 13 31 31 H 1.08996 * 109.47122 * 36.06806 * 21 12 10 32 32 H 1.09000 * 109.47220 * 156.07563 * 21 12 10 33 33 H 0.96701 * 117.00235 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0787 0.4881 0.5532 7 6 4.2455 1.8061 -1.2645 8 6 4.2008 2.6670 0.0001 9 1 3.5300 3.5262 0.0005 10 6 5.4864 2.8454 0.7658 11 8 5.9793 1.9043 1.3510 12 7 6.0884 4.0508 0.8005 13 6 7.2582 4.2130 1.4968 14 1 7.5535 3.4815 2.2343 15 6 8.0610 5.3217 1.2578 16 7 7.9833 5.9535 0.1081 17 14 9.2507 5.9140 2.5705 18 1 10.2177 4.8322 2.8865 19 1 9.9855 7.1042 2.0719 20 1 8.4948 6.2759 3.7964 21 6 5.4933 5.1874 0.0933 22 6 5.9134 5.1545 -1.3537 23 8 6.6362 4.2724 -1.7530 24 8 5.4855 6.1056 -2.1986 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.6037 2.0983 -2.0957 29 1 5.2046 1.3694 -1.5424 30 1 8.5439 6.7272 -0.0589 31 1 4.4069 5.1269 0.1576 32 1 5.8331 6.1173 0.5492 33 1 5.7818 6.0427 -3.1169 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737577565.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:17 Heat of formation + Delta-G solvation = -189.044045 kcal Electronic energy + Delta-G solvation = -21355.025765 eV Core-core repulsion = 17768.002280 eV Total energy + Delta-G solvation = -3587.023485 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.87236 -41.13416 -40.10087 -38.07014 -37.18995 -36.63271 -36.20449 -33.75213 -29.59394 -29.18803 -27.56774 -25.58315 -24.50398 -22.81184 -21.72196 -20.31693 -19.32757 -18.98076 -18.62227 -18.13508 -17.43537 -17.36451 -17.29063 -16.65131 -16.20975 -15.94879 -15.43806 -15.06822 -14.83251 -14.31997 -13.75058 -13.72718 -13.58401 -13.39356 -13.21971 -12.90224 -12.70182 -12.42632 -12.18461 -12.08601 -11.87134 -11.81027 -11.73717 -11.56809 -11.45470 -10.94137 -10.52750 -9.89656 -8.46426 -5.97056 0.89998 1.35086 1.43420 1.50498 1.57089 1.66913 1.82264 2.23117 2.48351 2.70637 2.92246 3.09019 3.47484 3.69330 3.74967 3.96300 3.99349 4.31795 4.32981 4.35656 4.53377 4.69207 4.71430 4.84156 4.89094 4.93069 5.25080 5.44627 5.97100 5.99196 6.35000 6.63043 7.06216 7.26956 7.47644 7.87577 8.60363 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.026005 B = 0.005540 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.454554 B = 5053.373702 C = 5690.269216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.506 3.494 4 O -0.527 6.527 5 C -0.139 4.139 6 H 0.139 0.861 7 C -0.097 4.097 8 C -0.154 4.154 9 H 0.140 0.860 10 C 0.476 3.524 11 O -0.618 6.618 12 N -0.433 5.433 13 C -0.347 4.347 14 H 0.081 0.919 15 C 0.004 3.996 16 N -0.885 5.885 17 Si 0.992 3.008 18 H -0.280 1.280 19 H -0.273 1.273 20 H -0.263 1.263 21 C 0.139 3.861 22 C 0.498 3.502 23 O -0.539 6.539 24 O -0.519 6.519 25 H 0.068 0.932 26 H 0.135 0.865 27 H 0.063 0.937 28 H 0.133 0.867 29 H 0.104 0.896 30 H 0.276 0.724 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.426 -2.378 -4.267 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.350 3.650 4 O -0.416 6.416 5 C -0.158 4.158 6 H 0.156 0.844 7 C -0.134 4.134 8 C -0.175 4.175 9 H 0.158 0.842 10 C 0.266 3.734 11 O -0.505 6.505 12 N -0.150 5.150 13 C -0.474 4.474 14 H 0.099 0.901 15 C -0.198 4.198 16 N -0.523 5.523 17 Si 0.815 3.185 18 H -0.206 1.206 19 H -0.197 1.197 20 H -0.187 1.187 21 C 0.014 3.986 22 C 0.340 3.660 23 O -0.427 6.427 24 O -0.332 6.332 25 H 0.087 0.913 26 H 0.153 0.847 27 H 0.082 0.918 28 H 0.151 0.849 29 H 0.123 0.877 30 H 0.086 0.914 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -12.251 -2.573 -3.777 13.076 hybrid contribution 1.018 0.346 -0.064 1.077 sum -11.233 -2.227 -3.841 12.078 Atomic orbital electron populations 1.23652 0.74075 1.06023 1.02882 1.86492 1.25473 1.31861 1.83455 1.22373 0.89822 0.81512 0.71277 1.90631 1.67144 1.37126 1.46747 1.21585 0.88394 0.99434 1.06399 0.84364 1.23052 1.02099 0.98316 0.89948 1.22213 0.96947 0.95561 1.02784 0.84237 1.19691 0.87210 0.82240 0.84253 1.90486 1.69038 1.40566 1.50365 1.43457 1.21520 1.06822 1.43241 1.19597 1.00234 1.09582 1.18019 0.90075 1.25977 0.98987 0.96878 0.98006 1.69911 1.40776 1.20982 1.20675 0.85020 0.77543 0.77530 0.78364 1.20595 1.19729 1.18745 1.20832 0.98189 0.93205 0.86420 1.23594 0.75971 0.77550 0.88920 1.90593 1.35055 1.38800 1.78245 1.84445 1.71198 1.51971 1.25584 0.91336 0.84700 0.91850 0.84883 0.87718 0.91397 0.86514 0.86420 0.72617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -9.00 10.57 -51.44 -0.54 -9.54 16 3 C 0.51 15.20 7.74 71.23 0.55 15.75 16 4 O -0.53 -17.49 16.01 21.98 0.35 -17.14 16 5 C -0.14 -4.57 5.81 -11.54 -0.07 -4.64 16 6 H 0.14 4.83 7.67 -2.39 -0.02 4.81 16 7 C -0.10 -3.08 9.94 30.61 0.30 -2.78 16 8 C -0.15 -5.82 4.70 -11.53 -0.05 -5.88 16 9 H 0.14 4.81 6.06 -2.38 -0.01 4.80 16 10 C 0.48 23.53 7.19 87.66 0.63 24.16 16 11 O -0.62 -34.94 15.90 -3.08 -0.05 -34.99 16 12 N -0.43 -22.00 2.18 -639.59 -1.39 -23.39 16 13 C -0.35 -19.36 9.32 84.04 0.78 -18.58 16 14 H 0.08 4.85 7.40 -2.91 -0.02 4.83 16 15 C 0.00 0.21 4.81 84.93 0.41 0.62 16 16 N -0.89 -45.41 9.38 21.66 0.20 -45.21 16 17 Si 0.99 41.35 29.61 68.60 2.03 43.38 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 20 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 21 C 0.14 5.92 4.97 85.63 0.43 6.34 16 22 C 0.50 21.07 6.38 71.24 0.45 21.52 16 23 O -0.54 -26.92 16.72 21.96 0.37 -26.56 16 24 O -0.52 -17.12 13.42 -51.38 -0.69 -17.81 16 25 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 26 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.08 8.13 -2.38 -0.02 1.06 16 28 H 0.13 3.41 8.14 -2.38 -0.02 3.39 16 29 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 30 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 31 H 0.12 4.02 6.27 -2.39 -0.01 4.01 16 32 H 0.12 5.18 6.45 -2.39 -0.02 5.16 16 33 H 0.41 10.03 9.10 -74.06 -0.67 9.36 16 Total: -1.00 -73.67 298.49 5.41 -68.26 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.49 Total: 24.84 kcal Atomic # 6 Polarization: 33.53 SS G_CDS: 4.63 Total: 38.16 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -1.19 Total: -68.60 kcal Atomic # 8 Polarization: -105.48 SS G_CDS: -0.56 Total: -106.04 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -73.67 5.41 -68.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737577565.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.782 kcal (2) G-P(sol) polarization free energy of solvation -73.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds