Wall clock time and date at job start Mon Mar 30 2020 01:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 116.99991 * 2 1 4 4 O 1.20832 * 120.00034 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00307 * 179.97438 * 3 2 1 6 6 H 1.09005 * 115.54883 * 34.33154 * 5 3 2 7 7 C 1.53001 * 117.51974 * 248.63075 * 5 3 2 8 8 C 1.53004 * 117.50206 * 179.97438 * 5 3 2 9 9 H 1.08998 * 117.49829 * 0.02562 * 8 5 3 10 10 C 1.50690 * 117.49930 * 215.00170 * 8 5 3 11 11 O 1.21291 * 120.00648 * 0.02562 * 10 8 5 12 12 N 1.34779 * 120.00105 * 180.02562 * 10 8 5 13 13 C 1.37101 * 120.00361 * 180.02562 * 12 10 8 14 14 H 1.07995 * 119.99721 * 30.13668 * 13 12 10 15 15 C 1.38952 * 119.99936 * 210.13251 * 13 12 10 16 16 N 1.31403 * 119.99947 * 40.50414 * 15 13 12 17 17 Si 1.86798 * 119.99910 * 220.49745 * 15 13 12 18 18 H 1.48503 * 109.47360 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.46763 * 60.00500 * 17 15 13 20 20 H 1.48502 * 109.47379 * 300.00411 * 17 15 13 21 21 C 1.46507 * 119.99837 * 0.02562 * 12 10 8 22 22 C 1.50695 * 109.47402 * 267.66698 * 21 12 10 23 23 O 1.20825 * 119.99905 * 359.97438 * 22 21 12 24 24 O 1.34232 * 120.00435 * 180.02562 * 22 21 12 25 25 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47339 * 300.00324 * 1 2 3 27 27 H 1.09006 * 109.47234 * 60.00319 * 1 2 3 28 28 H 1.08996 * 117.49735 * 145.02969 * 7 5 3 29 29 H 1.08995 * 117.49831 * 0.02562 * 7 5 3 30 30 H 0.97003 * 120.00305 * 5.86962 * 16 15 13 31 31 H 1.09001 * 109.46815 * 27.66553 * 21 12 10 32 32 H 1.08997 * 109.47087 * 147.66084 * 21 12 10 33 33 H 0.96699 * 117.00306 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 4.0785 0.4884 -0.5537 7 6 4.2458 1.8060 1.2644 8 6 4.2007 2.6672 -0.0001 9 1 3.5296 3.5261 -0.0005 10 6 5.4859 2.8458 -0.7663 11 8 5.9782 1.9052 -1.3527 12 7 6.0884 4.0510 -0.8002 13 6 7.2574 4.2137 -1.4978 14 1 7.4534 3.6098 -2.3713 15 6 8.1899 5.1557 -1.0808 16 7 8.4389 5.3114 0.2000 17 14 9.0895 6.2006 -2.3411 18 1 10.0232 7.1218 -1.6446 19 1 8.1047 6.9918 -3.1217 20 1 9.8554 5.3193 -3.2587 21 6 5.4941 5.1872 -0.0915 22 6 4.5928 5.9484 -1.0291 23 8 4.4607 5.5800 -2.1722 24 8 3.9374 7.0364 -0.5947 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 5.2051 1.3689 1.5415 29 1 3.6044 2.0979 2.0958 30 1 8.0367 4.7127 0.8486 31 1 4.9128 4.8232 0.7557 32 1 6.2851 5.8459 0.2669 33 1 3.3712 7.4917 -1.2328 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737577568.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:21 Heat of formation + Delta-G solvation = -169.595094 kcal Electronic energy + Delta-G solvation = -21230.922132 eV Core-core repulsion = 17644.742017 eV Total energy + Delta-G solvation = -3586.180115 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65674 -39.85948 -38.74857 -36.85527 -35.88991 -35.40920 -34.69186 -31.91200 -28.32117 -27.93091 -25.78715 -24.23916 -22.92805 -21.45507 -20.54718 -18.90762 -18.08721 -17.66463 -17.30966 -16.89627 -16.35021 -16.19845 -15.74184 -15.35342 -14.69181 -14.19920 -13.87592 -13.85852 -13.46856 -13.19651 -12.70478 -12.39184 -12.09759 -12.01024 -11.96387 -11.40778 -10.98662 -10.93139 -10.88518 -10.65918 -10.40441 -10.36660 -10.27501 -10.21460 -10.07199 -9.07620 -8.62375 -8.03480 -6.86853 -4.00833 2.08191 2.57616 2.79316 3.10138 3.24922 3.35471 3.54179 3.61158 3.99947 4.20439 4.48736 4.71595 4.76154 4.91626 4.97640 5.04603 5.10409 5.22152 5.39202 5.47002 5.58350 5.67365 5.91289 6.05306 6.08490 6.11941 6.31271 6.95637 7.68179 7.75052 8.06697 8.35053 8.46336 8.76392 9.19069 9.66228 10.36938 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.025900 B = 0.005562 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.812881 B = 5033.343766 C = 5576.871340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.496 3.504 4 O -0.508 6.508 5 C -0.145 4.145 6 H 0.148 0.852 7 C -0.120 4.120 8 C -0.144 4.144 9 H 0.121 0.879 10 C 0.487 3.513 11 O -0.560 6.560 12 N -0.422 5.422 13 C -0.413 4.413 14 H 0.093 0.907 15 C 0.022 3.978 16 N -0.845 5.845 17 Si 1.055 2.945 18 H -0.279 1.279 19 H -0.283 1.283 20 H -0.279 1.279 21 C 0.103 3.897 22 C 0.455 3.545 23 O -0.496 6.496 24 O -0.526 6.526 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.279 0.721 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.487 -2.726 4.645 12.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.339 3.661 4 O -0.396 6.396 5 C -0.164 4.164 6 H 0.166 0.834 7 C -0.158 4.158 8 C -0.165 4.165 9 H 0.139 0.861 10 C 0.277 3.723 11 O -0.443 6.443 12 N -0.141 5.141 13 C -0.539 4.539 14 H 0.110 0.890 15 C -0.189 4.189 16 N -0.477 5.477 17 Si 0.880 3.120 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.204 1.204 21 C -0.024 4.024 22 C 0.294 3.706 23 O -0.381 6.381 24 O -0.337 6.337 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.147 0.853 33 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -10.146 -1.975 4.148 11.138 hybrid contribution -1.914 -0.749 -0.388 2.092 sum -12.060 -2.724 3.760 12.923 Atomic orbital electron populations 1.23267 0.76494 1.03587 1.02537 1.86506 1.23192 1.33223 1.84105 1.22718 0.90493 0.81147 0.71697 1.90652 1.66938 1.36446 1.45583 1.21648 0.87438 1.01155 1.06205 0.83405 1.23057 1.02393 1.00350 0.89958 1.22437 0.99007 0.93900 1.01183 0.86075 1.19092 0.85312 0.83200 0.84742 1.90544 1.66520 1.39638 1.47564 1.43058 1.20905 1.03806 1.46318 1.20123 0.95706 1.26772 1.11329 0.88964 1.26325 0.95441 0.97987 0.99122 1.70826 1.34748 1.39377 1.02745 0.83733 0.76303 0.76670 0.75296 1.20370 1.20950 1.20443 1.21195 0.96833 0.91438 0.92942 1.24703 0.78407 0.78407 0.89058 1.90702 1.60628 1.66691 1.20123 1.84577 1.58872 1.41760 1.48498 0.88091 0.91943 0.91903 0.86427 0.87544 0.91073 0.87917 0.85259 0.74283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.35 -4.85 10.57 -39.25 -0.41 -5.27 16 3 C 0.50 7.94 7.74 36.00 0.28 8.22 16 4 O -0.51 -9.16 16.01 -18.76 -0.30 -9.46 16 5 C -0.15 -2.41 5.81 -91.77 -0.53 -2.94 16 6 H 0.15 2.53 7.67 -51.93 -0.40 2.13 16 7 C -0.12 -1.76 9.94 -26.70 -0.27 -2.03 16 8 C -0.14 -2.70 4.31 -91.75 -0.40 -3.10 16 9 H 0.12 2.25 6.62 -51.93 -0.34 1.91 16 10 C 0.49 11.74 7.41 -10.99 -0.08 11.66 16 11 O -0.56 -15.35 16.04 5.55 0.09 -15.26 16 12 N -0.42 -10.43 1.94 -116.10 -0.22 -10.66 16 13 C -0.41 -11.40 8.78 -14.93 -0.13 -11.54 16 14 H 0.09 2.79 7.76 -52.49 -0.41 2.38 16 15 C 0.02 0.56 4.49 -17.47 -0.08 0.48 16 16 N -0.85 -21.98 12.22 55.50 0.68 -21.30 16 17 Si 1.05 23.42 30.05 -169.99 -5.11 18.31 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.10 2.13 5.13 -5.19 -0.03 2.11 16 22 C 0.45 9.26 8.24 36.00 0.30 9.55 16 23 O -0.50 -11.91 17.17 -18.75 -0.32 -12.23 16 24 O -0.53 -8.31 13.42 -39.26 -0.53 -8.84 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 27 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 28 H 0.12 1.68 8.14 -51.93 -0.42 1.26 16 29 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.28 7.19 8.15 -40.82 -0.33 6.86 16 31 H 0.10 1.77 6.51 -51.93 -0.34 1.43 16 32 H 0.13 2.81 5.73 -51.93 -0.30 2.51 16 33 H 0.40 4.49 9.10 45.56 0.41 4.90 16 LS Contribution 303.38 15.07 4.57 4.57 Total: -1.00 -34.54 303.38 -4.04 -38.58 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -2.61 Total: 7.72 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 0.13 Total: 13.83 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.45 Total: -31.96 kcal Atomic # 8 Polarization: -49.57 SS G_CDS: -1.48 Total: -51.04 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.11 Total: 18.31 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.54 -4.04 -38.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737577568.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.018 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds