Wall clock time and date at job start Mon Mar 30 2020 01:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34228 * 116.99991 * 2 1 4 4 O 1.20832 * 120.00034 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00307 * 179.97438 * 3 2 1 6 6 H 1.09005 * 115.54883 * 34.33154 * 5 3 2 7 7 C 1.53001 * 117.51974 * 248.63075 * 5 3 2 8 8 C 1.53004 * 117.50206 * 179.97438 * 5 3 2 9 9 H 1.08998 * 117.49829 * 0.02562 * 8 5 3 10 10 C 1.50690 * 117.49930 * 215.00170 * 8 5 3 11 11 O 1.21291 * 120.00648 * 0.02562 * 10 8 5 12 12 N 1.34779 * 120.00105 * 180.02562 * 10 8 5 13 13 C 1.37101 * 120.00361 * 180.02562 * 12 10 8 14 14 H 1.07995 * 119.99721 * 30.13668 * 13 12 10 15 15 C 1.38952 * 119.99936 * 210.13251 * 13 12 10 16 16 N 1.31403 * 119.99947 * 40.50414 * 15 13 12 17 17 Si 1.86798 * 119.99910 * 220.49745 * 15 13 12 18 18 H 1.48503 * 109.47360 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.46763 * 60.00500 * 17 15 13 20 20 H 1.48502 * 109.47379 * 300.00411 * 17 15 13 21 21 C 1.46507 * 119.99837 * 0.02562 * 12 10 8 22 22 C 1.50695 * 109.47402 * 267.66698 * 21 12 10 23 23 O 1.20825 * 119.99905 * 359.97438 * 22 21 12 24 24 O 1.34232 * 120.00435 * 180.02562 * 22 21 12 25 25 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47339 * 300.00324 * 1 2 3 27 27 H 1.09006 * 109.47234 * 60.00319 * 1 2 3 28 28 H 1.08996 * 117.49735 * 145.02969 * 7 5 3 29 29 H 1.08995 * 117.49831 * 0.02562 * 7 5 3 30 30 H 0.97003 * 120.00305 * 5.86962 * 16 15 13 31 31 H 1.09001 * 109.46815 * 27.66553 * 21 12 10 32 32 H 1.08997 * 109.47087 * 147.66084 * 21 12 10 33 33 H 0.96699 * 117.00306 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 4.0785 0.4884 -0.5537 7 6 4.2458 1.8060 1.2644 8 6 4.2007 2.6672 -0.0001 9 1 3.5296 3.5261 -0.0005 10 6 5.4859 2.8458 -0.7663 11 8 5.9782 1.9052 -1.3527 12 7 6.0884 4.0510 -0.8002 13 6 7.2574 4.2137 -1.4978 14 1 7.4534 3.6098 -2.3713 15 6 8.1899 5.1557 -1.0808 16 7 8.4389 5.3114 0.2000 17 14 9.0895 6.2006 -2.3411 18 1 10.0232 7.1218 -1.6446 19 1 8.1047 6.9918 -3.1217 20 1 9.8554 5.3193 -3.2587 21 6 5.4941 5.1872 -0.0915 22 6 4.5928 5.9484 -1.0291 23 8 4.4607 5.5800 -2.1722 24 8 3.9374 7.0364 -0.5947 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 5.2051 1.3689 1.5415 29 1 3.6044 2.0979 2.0958 30 1 8.0367 4.7127 0.8486 31 1 4.9128 4.8232 0.7557 32 1 6.2851 5.8459 0.2669 33 1 3.3712 7.4917 -1.2328 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737577568.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:21 Heat of formation + Delta-G solvation = -193.948619 kcal Electronic energy + Delta-G solvation = -21231.978180 eV Core-core repulsion = 17644.742017 eV Total energy + Delta-G solvation = -3587.236164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.97629 -41.42726 -40.38414 -38.17338 -37.38511 -36.92182 -36.47693 -33.86774 -29.69397 -29.27524 -27.48307 -25.57497 -24.51706 -23.03811 -21.81967 -20.60484 -19.61739 -19.24822 -18.98074 -18.20077 -17.75854 -17.47736 -17.25970 -16.99998 -16.44932 -15.73564 -15.60210 -15.35328 -14.97185 -14.40200 -14.10316 -13.95723 -13.74015 -13.43065 -13.21426 -12.95357 -12.75901 -12.53382 -12.17549 -11.99124 -11.94750 -11.87735 -11.81765 -11.76448 -11.65788 -10.99672 -10.52685 -9.99309 -8.93572 -6.08909 0.83441 1.17440 1.34051 1.44528 1.53723 1.62565 1.80139 2.03358 2.35931 2.55443 2.80655 2.94626 3.37535 3.54366 3.65152 3.90377 3.97872 4.08158 4.26688 4.29762 4.38933 4.43076 4.51776 4.66404 4.74094 4.87088 5.19243 5.56771 5.72087 5.88903 6.42574 6.56842 6.80361 6.97939 7.21866 7.75176 8.30602 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.025900 B = 0.005562 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.812881 B = 5033.343766 C = 5576.871340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.504 3.496 4 O -0.531 6.531 5 C -0.147 4.147 6 H 0.137 0.863 7 C -0.083 4.083 8 C -0.163 4.163 9 H 0.126 0.874 10 C 0.479 3.521 11 O -0.609 6.609 12 N -0.435 5.435 13 C -0.445 4.445 14 H 0.050 0.950 15 C 0.001 3.999 16 N -0.846 5.846 17 Si 1.096 2.904 18 H -0.263 1.263 19 H -0.282 1.282 20 H -0.275 1.275 21 C 0.102 3.898 22 C 0.465 3.535 23 O -0.540 6.540 24 O -0.505 6.505 25 H 0.137 0.863 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.122 0.878 29 H 0.144 0.856 30 H 0.274 0.726 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.843 -2.151 6.227 14.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.348 3.652 4 O -0.421 6.421 5 C -0.166 4.166 6 H 0.155 0.845 7 C -0.120 4.120 8 C -0.184 4.184 9 H 0.144 0.856 10 C 0.270 3.730 11 O -0.495 6.495 12 N -0.153 5.153 13 C -0.571 4.571 14 H 0.068 0.932 15 C -0.207 4.207 16 N -0.477 5.477 17 Si 0.916 3.084 18 H -0.187 1.187 19 H -0.208 1.208 20 H -0.200 1.200 21 C -0.024 4.024 22 C 0.306 3.694 23 O -0.429 6.429 24 O -0.318 6.318 25 H 0.155 0.845 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.084 0.916 31 H 0.158 0.842 32 H 0.140 0.860 33 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -11.535 -1.374 5.772 12.972 hybrid contribution -1.602 -0.961 -0.851 2.053 sum -13.137 -2.335 4.921 14.222 Atomic orbital electron populations 1.23656 0.74083 1.06097 1.02804 1.86489 1.25468 1.31769 1.83418 1.22460 0.90027 0.81490 0.71218 1.90641 1.67277 1.37265 1.46896 1.21622 0.88339 0.99173 1.07503 0.84483 1.23273 1.02846 0.96582 0.89293 1.22163 0.96777 0.95478 1.04031 0.85581 1.19946 0.86625 0.82419 0.84050 1.90496 1.68371 1.41093 1.49523 1.43163 1.20585 1.05298 1.46262 1.19885 0.98018 1.28120 1.11111 0.93219 1.27331 0.95410 0.97859 1.00104 1.70901 1.34788 1.39242 1.02743 0.83200 0.75793 0.75695 0.73663 1.18717 1.20780 1.20014 1.21305 0.97091 0.90388 0.93616 1.24420 0.78082 0.78890 0.88001 1.90700 1.62309 1.68101 1.21772 1.84492 1.58530 1.40022 1.48751 0.84529 0.91133 0.92232 0.85961 0.83782 0.91581 0.84201 0.86047 0.71438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -9.03 10.57 -51.40 -0.54 -9.57 16 3 C 0.50 15.31 7.74 71.23 0.55 15.86 16 4 O -0.53 -18.22 16.01 21.94 0.35 -17.87 16 5 C -0.15 -4.73 5.81 -11.54 -0.07 -4.80 16 6 H 0.14 4.74 7.67 -2.38 -0.02 4.72 16 7 C -0.08 -2.22 9.94 30.61 0.30 -1.92 16 8 C -0.16 -6.01 4.31 -11.52 -0.05 -6.06 16 9 H 0.13 4.52 6.62 -2.39 -0.02 4.50 16 10 C 0.48 23.62 7.41 87.65 0.65 24.27 16 11 O -0.61 -34.94 16.04 -3.06 -0.05 -34.99 16 12 N -0.43 -21.95 1.94 -639.60 -1.24 -23.19 16 13 C -0.45 -25.46 8.78 84.04 0.74 -24.72 16 14 H 0.05 3.21 7.76 -2.91 -0.02 3.18 16 15 C 0.00 0.08 4.49 84.93 0.38 0.46 16 16 N -0.85 -43.75 12.22 21.66 0.26 -43.49 16 17 Si 1.10 47.37 30.05 68.60 2.06 49.43 16 18 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 C 0.10 4.15 5.13 85.63 0.44 4.59 16 22 C 0.46 18.44 8.24 71.23 0.59 19.03 16 23 O -0.54 -26.03 17.17 21.97 0.38 -25.65 16 24 O -0.50 -14.63 13.42 -51.44 -0.69 -15.32 16 25 H 0.14 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.07 1.12 8.13 -2.39 -0.02 1.10 16 27 H 0.06 1.08 8.13 -2.38 -0.02 1.06 16 28 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 29 H 0.14 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.27 14.16 8.15 -92.71 -0.76 13.40 16 31 H 0.14 4.54 6.51 -2.39 -0.02 4.52 16 32 H 0.12 5.18 5.73 -2.39 -0.01 5.17 16 33 H 0.42 8.27 9.10 -74.06 -0.67 7.59 16 Total: -1.00 -77.69 303.38 5.77 -71.92 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.51 Total: 20.37 kcal Atomic # 6 Polarization: 23.62 SS G_CDS: 4.73 Total: 28.36 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -0.97 Total: -66.68 kcal Atomic # 8 Polarization: -102.84 SS G_CDS: -0.55 Total: -103.40 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.06 Total: 49.43 kcal Total: -77.69 5.77 -71.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737577568.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.029 kcal (2) G-P(sol) polarization free energy of solvation -77.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds